cluster # 6423

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6423 cluster # 6423 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6423#0 length = 961 sequences # 3

consensus_6423#1 length = 926 sequences # 2

consensusID : consensus_6423#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 961
fasta sequence

                              [CCGCGGACGCGTGGGGTTTAGCGGACGCG-TTGTTCCACGGTCTGCTACGAATTCCTCGTAATTTAAGGTAGCCACAATGCCAGCGAAGGATGAAAAGACCGCGAAGCCCGCTGCGGGCAAGGACAAGTCGAAGAACGTGATGCGCGATCTGCGTATCCGCAAGCTCTGCCTGAACATTTGCGTCGGCGAGTCCGGTGATAGGCTGACACGTGCCGCCAAGGTGCTGGAACAGCTGACCAACCAGACGCCCGTCTACTCGAAGGCCCGCTACACCGTGCGCTCGTTCGGCATCCGTCGTAACGAAAAGATTGCCGTCCACTGCACGGTGCGCGGTGCCAAGGCGGAGGAGATCCTCGAGCGTGGCCTGAAGGTGCGCGAGTACGAGCTGCGTCGCGACAACTTCTCGCAGACCGGCAACTTCGGCTTCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCGACGATCGGTATCTACGGTTTGGACTTCTACGTTGTGCTTGGCCGTCCAGGATACAACGTTGCCCAGCGACGACGCAAGATGGGCAAGATCGGCTTCATCCACCGTCTGACCAAGGAGGACGCGATGAAGTGGTTCCAGCAGAAGTACGACGGTGTCATCCTGAACAGCAAGGCGAAGTAAGAGCCCGGATACGCTCTTCCTTATGCACGTTTATGTGTGTTGCGAGTGCTTCTAAAGTTTGGGTAAGACAGGTGTGCCGCGGAGGAGGCGGAGGAAGGACCGGAGGAAGGACCGGAGCAGGTGGGCGCGTTGAGAAAAGAATAAACAATTTTCATCGAAGCCATCATCGCCGAAGTTTTGGGTGAAAATACGGTGTACAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAGTTACAGCTACTGATGTACTCAACTCATGAACAGTTCCTTCATTAGGAGTTAAGGTAGATGCTACTCCA]

[+] EMBL BM582701             [CCGCGGACGCGTGGGGTTTAGCGGACGCG TTGTTCCACGGTCTGCTACGAATTCCTCGTAATTTAAGGTAGCCACAATGCCAGCGAAGGATGAAAAGACCGCGAAGCCCGCTGCGGGCAAGGACAAGTCGAAGAACGTGATGCGCGATCTGCGTATCCGCAAGCTCTGCCTGAACATTTGCGTCGGCGAGTCCGGTGATAGGCTGACACGTGCCGCCAAGGTGCTGGAACAGCTGACCAACCAGACGCCCGTCTACTCGAAGGCCCGCTACACCGTGCGCTCGTTCGGCATCCGTCGTAACGAAAAGATTGCCGTCCACTGCACGGTGCGCGGTGCCAAGGCGGAGGAGATCCTCGAGCGTGGCCTGAAGGTGCGCGAGTACGAGCTGCGTCGCGACAACTTCTCGCAGACCGGCAACTTCGGCTTCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCGACGATCGGTATCTACGGTTTGGACTTCTACGTTGTGCTTGGCCGTCCAGGATACAACGTTGCCCAGCGACGACGCAAGATGGGCAAGATCGGCTTCATCCACCGTCTGACCAAGGAGGACGCGATGAAGTGGTTCCAG                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CNS0981W             [            gttGTTTAGCGGACGCGTTTGTTCCACGGTCTGCTACGAATTCCTCGTAATTTAAGGTAGCCACAATGCCAGCGAAGGATGAAAAGACCGCGAAG CCGCTGCGGGCAAGGACAAGTCGAAGAACGTGATGCGCGATCTGCGTATCCGCAAGCTCTGCCTGAACATTTGCGTCGGCGAGTCCGGTGATAGGCTGACACGTGCCGCTAAGGTGCTGGAACA CTGACCAACCAGACGCCCGTCTACTCGAAGGCCCGCTACACCGTGCGCTCGTTCGGCATCCGTCGTAACGAAAAGATTGCCGTCCACTGTACGGTGCGCGGTGCCAAGGCGGAGGAGATCCTCGAGCGTGGCCTGAAGGTGCGCGAGTACGAGCTGCGTCGCGACAACTTCTCGCAGACCGGCAACTTCGGCTTCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCGACGATCGGTATCTACGGTTTGGACTTCTACGTTGTGCTTGGCCGTCCAGGATACAACGTTGCCCAGCGACGACGCAAGATGGGCAAGATCGGCTTCATCCACCGTCTGACCAAGGAGGACGCGATGAAGTGGTTCCAGCAGAAGTACGACGGTGTCATCCTGAACAGCAAGGCGAAGTAAGAGCCCGGATACGCTCTTCCTTATGCACGTTTATGTGTGTTGCGAGTGCTTCTAAAGTTTGGGTAAGACAGGTGTGCCGCGGAGGAGGCGGAGGAAGGACCGGAGGAAGGACCGGAGCAGGTGGGCGCGTTGAGAAAAGAATAAACAATTTTCATCGAAGCCATCATCGCCGAAGTTTTGGGTGAAAATACGGTGTACAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                                                                          ]
[-] EMBL CNS09MK3             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCGAAGCCATCATCCCCGAAGGTTTGGGTGAAAATACGGTGTACAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAATTCGAATTTTAGTTACAGCTACTGATGTACTCAACTCATGAACAGTTCCTTCATTAGGAGTTAAGGTAGATGCTACTCCA]




>consensus_6423#0
CCGCGGACGCGTGGGGTTTAGCGGACGCGTTGTTCCACGGTCTGCTACGAATTCCTCGTA
ATTTAAGGTAGCCACAATGCCAGCGAAGGATGAAAAGACCGCGAAGCCCGCTGCGGGCAA
GGACAAGTCGAAGAACGTGATGCGCGATCTGCGTATCCGCAAGCTCTGCCTGAACATTTG
CGTCGGCGAGTCCGGTGATAGGCTGACACGTGCCGCCAAGGTGCTGGAACAGCTGACCAA
CCAGACGCCCGTCTACTCGAAGGCCCGCTACACCGTGCGCTCGTTCGGCATCCGTCGTAA
CGAAAAGATTGCCGTCCACTGCACGGTGCGCGGTGCCAAGGCGGAGGAGATCCTCGAGCG
TGGCCTGAAGGTGCGCGAGTACGAGCTGCGTCGCGACAACTTCTCGCAGACCGGCAACTT
CGGCTTCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCGACGATCGGTAT
CTACGGTTTGGACTTCTACGTTGTGCTTGGCCGTCCAGGATACAACGTTGCCCAGCGACG
ACGCAAGATGGGCAAGATCGGCTTCATCCACCGTCTGACCAAGGAGGACGCGATGAAGTG
GTTCCAGCAGAAGTACGACGGTGTCATCCTGAACAGCAAGGCGAAGTAAGAGCCCGGATA
CGCTCTTCCTTATGCACGTTTATGTGTGTTGCGAGTGCTTCTAAAGTTTGGGTAAGACAG
GTGTGCCGCGGAGGAGGCGGAGGAAGGACCGGAGGAAGGACCGGAGCAGGTGGGCGCGTT
GAGAAAAGAATAAACAATTTTCATCGAAGCCATCATCGCCGAAGTTTTGGGTGAAAATAC
GGTGTACAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAGTTACAGC
TACTGATGTACTCAACTCATGAACAGTTCCTTCATTAGGAGTTAAGGTAGATGCTACTCC
A

consensusID : consensus_6423#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 926
fasta sequence

                              [CGTGCCCATTGACGCTAAACTTTCCTGCCACTTGTTGGGTGTGATTTCGATTCGACTTCTACTTTCGGTGGTGCTGTGTTGCCTAGTGGCTTTG-CGCATCCAGT-TCCGT-TGCGGCCGTCGGCGAGCTAATTGGGTTAAATTGTCTGTTTGTCCTAAACCAACATGTCGTGGTACTATACGCCCCACCCGACCGTTGTGCCGGCGGAAGACTTCGATGCATCGGCCGACGCCAATGCACTCCGGAAGGCGATGAAAGGTTTCGGCACGAGACGAGCAGGCCATCATCGACATTCTCTGTGCCCGTTCGAACGGAAAAAAAAAAAAAATAGCGGAAGCGTATCAAGCGTGAATTGGGCAGGGATTTGATCGACGATTTGAAGTCGGAGCTGGGCGGCAAGTTCGAGGACGTTATCCTGGGGCTGATGCTGCGCCCGGAAGCGTACCTGTGCAAGCAGCTGCACAAAGCGATGGACGGTATCGGGACCGACGAAAAGTCGCTGATCGAAATCATCTGCCCGCAGACGAACGATCAGATACGGGCGATCGTCGACTGCTACGAGGAGATGTACAGCCGGCCCCTGGCGACGCATCTGTGCAGCGAAACGTCCGGCAGCTTCCGCCGGTTGCTGACCATGATCATCGTAGGATCGCGCGATCCCCAGGGCACAGTCGATCCAGAAAAAAAAAAAGAGCAGGCCAAGCAGCTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAAAGTTTGTCCGGCCGTACGATCGAGCAGGCACTGAAGGCGGAACTGAGCGGTGAGCTTTATGATGCGCTCAGCCGAATCGTGGAGTGCGTTCAGATGGCACCGCACTTCTTTGCCA]

[+] EMBL CNS09KBN             [CGTGCCCATTGACGCTAAACTTTCCTGCCACTTGTTGGGTGTGATTTCGATTCGACTTCTACTTTCGGTGGTGCTGTGTTGCCTAGTGGCTTTG CGCATCCAGT TCCGT TGCGGCCGTCGGCGAGCTAATTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CNS08VGO             [                                             TTCGATTCGACTTCTACTTTCGGTGGTGCTGTGTTGCCTAGTGGCTTTGCCGCATCCAGTATCCGTATGCGGCCGTCGGCGAGCTAATTGTGTTAAATTGTCTGTTTGTCCTAAACCAACATGTCGTGGTACTATACGCCCCACCCGACCGTTGTGCCGGCGGAAGACTTCGATGCATCGGCCGACGCCAATGCACTCCGGAAGGCGATGAAAGGTTTCGGCACGAGACGAGCAGGCCATCATCGACATTCTCTGTGCCCGTTCGAACGGAAAAAAAAAAAAAATAGCGGAAGCGTATCAAGCGTGAATTGGGCAGGGATTTGATCGACGATTTGAAGTCGGAGCTGGGCGGCAAGTTCGAGGACGTTATCCTGGGGCTGATGCTGCGCCCGGAAGCGTACCTGTGCAAGCAGCTGCACAAAGCGATGGACGGTATCGGGACCGACGAAAAGTCGCTGATCGAAATCATCTGCCCGCAGACGAACGATCAGATACGGGCGATCGTCGACTGCTACGAGGAGATGTACAGCCGGCCCCTGGCGACGCATCTGTGCAGCGAAACGTCCGGCAGCTTCCGCCGGTTGCTGACCATGATCATCGTAGGATCGCGCGATCCCCAGGGCACAGTCGATCCAGAAAAAAAAAAAGAGCAGGCCAAGCAGCTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAAAGTTTGTCCGGCCGTACGATCGAGCAGGCACTGAAGGCGGAACTGAGCGGTGAGCTTTATGATGCGCTCAGCCGAATCGTGGAGTGCGTTCAGATGGCACCGCACTTCTTTGCCA]




>consensus_6423#1
CGTGCCCATTGACGCTAAACTTTCCTGCCACTTGTTGGGTGTGATTTCGATTCGACTTCT
ACTTTCGGTGGTGCTGTGTTGCCTAGTGGCTTTGCGCATCCAGTTCCGTTGCGGCCGTCG
GCGAGCTAATTGGGTTAAATTGTCTGTTTGTCCTAAACCAACATGTCGTGGTACTATACG
CCCCACCCGACCGTTGTGCCGGCGGAAGACTTCGATGCATCGGCCGACGCCAATGCACTC
CGGAAGGCGATGAAAGGTTTCGGCACGAGACGAGCAGGCCATCATCGACATTCTCTGTGC
CCGTTCGAACGGAAAAAAAAAAAAAATAGCGGAAGCGTATCAAGCGTGAATTGGGCAGGG
ATTTGATCGACGATTTGAAGTCGGAGCTGGGCGGCAAGTTCGAGGACGTTATCCTGGGGC
TGATGCTGCGCCCGGAAGCGTACCTGTGCAAGCAGCTGCACAAAGCGATGGACGGTATCG
GGACCGACGAAAAGTCGCTGATCGAAATCATCTGCCCGCAGACGAACGATCAGATACGGG
CGATCGTCGACTGCTACGAGGAGATGTACAGCCGGCCCCTGGCGACGCATCTGTGCAGCG
AAACGTCCGGCAGCTTCCGCCGGTTGCTGACCATGATCATCGTAGGATCGCGCGATCCCC
AGGGCACAGTCGATCCAGAAAAAAAAAAAGAGCAGGCCAAGCAGCTGTACGATGCGGGCG
AGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCTCCTTCGA
CCAGCTCGAGATTGTGTTCGAGGAGTACAAAAGTTTGTCCGGCCGTACGATCGAGCAGGC
ACTGAAGGCGGAACTGAGCGGTGAGCTTTATGATGCGCTCAGCCGAATCGTGGAGTGCGT
TCAGATGGCACCGCACTTCTTTGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6423#0      CCGCGGACGCGTGGGGTTTAGCGGACGCGTTGTT-CCACGGTCTGCTACGAATTCCTCGT 59
consensus_6423#1      ---------------------CGTGCCCATTGACGCTAAACTTTCCTGCCACTTGTTGG- 38
                                           **  * * ***   * *   * * ** * * **  * * 

consensus_6423#0      AATTTAAGGTAGCCACAATGCCAGCGAAGGATGAAAAGACCGCGAAGCCCGCTGCGGGCA 119
consensus_6423#1      -GTGTGATTTCGATTCGACTTCTACTTTCGGTGGT---GCTGTGTTGCCTA--GTGGCTT 92
                        * * *  * *   * *   *  *    * **      * * *  ***    * **   

consensus_6423#0      AGGACAAGTCGAAGAACGTGATGCGCGATCTGCGTATCCGCAAGCTCTGCCTGAACATTT 179
consensus_6423#1      TGCGCA--TCCAGTTCCGTTGCG-GCCGTCGGCGAGCTAATTGGGTTAAATTGTCTGTTT 149
                       *  **  ** *    ***   * **  ** ***         * *     **    ***

consensus_6423#0      GCGTCGGCGAGTCCGGTGATAGGCTGACACGTGCCGCCAAGGTGCTGGAACAGCTGACCA 239
consensus_6423#1      GTCCTAAACCAACATGTCGTGGTACTATACGCCCCACCCGACCGTTGTGCCGGCGGAAGA 209
                      *           *  **  * *    * ***  ** **     * **   * ** **  *

consensus_6423#0      ACCAGACGC--CCGTCTACTCGAAGGC---CCGCTACACCGTGCGCTCGTTCGGCATCCG 294
consensus_6423#1      CTTCGATGCATCGGCCGACGCCAATGCACTCCGGAAGGCGATGAAAGGTTTCGGCA---- 265
                          ** **  * * * ** * ** **   ***  *  *  **      *******    

consensus_6423#0      TCGTAACGAAAAGATTGCCGTCCAC-TGCACGGTGCGCGGTGCCAAGGCGGAGGAGATCC 353
consensus_6423#1      -CGAGACGAGCAGGCCATCATCGACATTCTCTGTGCCCGTTCGAACGGAAAAAAAAA--- 321
                       **  ****  **     * ** ** * * * **** ** *   * **   *  * *   

consensus_6423#0      TCGAGCGTGGCCTGAAGGTGCGCGAGTACGAGCTGCGTCGCGACAACTTCTCGCAGACCG 413
consensus_6423#1      --AAAAATAGCGGAAGCGTAT-CAAGCGTGAATTGGGCAGGGAT--TTGATCGACGATTT 376
                         *   * **   *  **   * **   **  ** *  * **    *  ***  **   

consensus_6423#0      GCAACTTCGGCTT--CGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCGAC 471
consensus_6423#1      GAAGTCGGAGCTGGGCGGCAAGTTCGAGGACGTTATCCTGGGGCTGATGCTGCGCCCG-- 434
                      * *      ***   *****     **  ** *    *****  * * *      ***  

consensus_6423#0      GATCGGTATCTACGGTTTGGACTTCTACGTTGTGCTTGGCCGTCCAGGATACAACGTTGC 531
consensus_6423#1      GAAGCGTACCTGTG-CAAGCAGCTGCACAAAGCGATGGACGGTATCGG----------GA 483
                      **   *** **  *    * *  *  **   * * * * * **   **          * 

consensus_6423#0      CCAGCGACGACGCAAGATGGGCAAGATCGGCTTCATCCAC-CGTCTGACCAAGGA-GGAC 589
consensus_6423#1      CCGACGAAAAGTC--GCTGATCGAAATCATCTGCCCGCAGACGAACGATCAGATACGGGC 541
                      **  ***  *  *  * **  * * ***  ** *   **  **   ** **   * ** *

consensus_6423#0      G-CGATGAAGTGGTTCCAGCAGAAGTACGACGGTGTCATCCTGAACAGCAAGGCGAAGTA 648
consensus_6423#1      GATCGTCGACTGCTACGAGGAGATGTACAGCCG-GCCCCTGGCGACGCATCTGTGCAGCG 600
                      *    *  * ** * * ** *** ****  * * * *       **      * * **  

consensus_6423#0      AGAGCCCGGATACGCTCTTCCTTATGCACGTTTATGTGTGTTGCGAGTGCTTCTAAAGTT 708
consensus_6423#1      AAACGTCCGGCAGCTTCCGCCGGTTGC-TGACCATGATCATCGTAGGATCGCGCGATCCC 659
                      * *   * *  *   **  **   ***  *   ***    * *   *  *     *    

consensus_6423#0      TGGGTAAGACAGGTGTGCCGCGGAGGAGGCGGAGGAAGGACCGGAGGAAGGACCGGAGCA 768
consensus_6423#1      CAGG--GCACAGTCGATCCA-GAAAAAAAAAAAGAGCAGGCCAAGCAGCTGTACGATGCG 716
                        **    ****  *  **  * *  *     **    * **        *  **  ** 

consensus_6423#0      GGTGGGCGCGT-TGAGAAAAGAATAAACAATTTTCATCGAAGCCATCATCGCCGAAGTTT 827
consensus_6423#1      GGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCTCCT 776
                      ** * * **      *  * * *  *  ** * *  *  ***  *    ***       *

consensus_6423#0      TGGGTGAA---AATACGGTGTACAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 884
consensus_6423#1      TCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAAAGTTTGTCCGGCCGTACGATCGAGC 836
                      * *   *     * *  **** * *    ** ****              *  *   *  

consensus_6423#0      AAATTTTAGTTACAGCTACTGATGTACTCAACTCATGAACAGTTCCTTC--ATTA-GGAG 941
consensus_6423#1      AGGCACTGAAGGCGGA-ACTGAGCGGTGAGCTTTATGATGCGCTCAGCCGAATCGTGGAG 895
                      *     *     * *  *****          * ****   * **   *  **   ****

consensus_6423#0      TTAAGGTAGATGCTACTCCA----------- 961
consensus_6423#1      TGCGTTCAGATGGCACCGCACTTCTTTGCCA 926
                      *      *****  **  **