cluster # 6427

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Anopheles gambiae
cluster # 6427 cluster # 6427 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6427#0 length = 1154 sequences # 3

consensus_6427#1 length = 695 sequences # 1
consensus_6427#2 length = 170 sequences # 1

consensusID : consensus_6427#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1154
fasta sequence

                              [CAGGTAGCGAACATCATCATGATCCGTAAGCGTATGTTCCAAAGCCCCGATACATCTATCCGGCATTTATGTGTGCCGAGTGATCGCGTTATCGATTATGAATGAAAAACAAAACTGACGCAAATGGCATGCTTTAACAACAAAAAAAAAACTCCCGTAACAACTGGAGAAACCGTTGATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAACAACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATGCGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCTGATCCGAGTGAGCCATGCAATTGAACACGTTGCGTTGCGAATTATGTTGTCATTTCTATAAGAACACGATCATCCGTTATTGAGGAACTTTCATTTTTGAGTAAGAAGAACACTCACCCTATGCGAAGCANGCATTGTTTGGGATTTTCCC-AAAAAAGAAAGATAAACGAAATCTAAACGCACATGATTGTAGATCCTCACACGATCGTAGTAACACATCGAACGTTGATTGCATGCCGGGTTTGTTTTTAAAACAGTGCAATCCAATTGTATAGATTATGCACACACACACATACACATACACACCTACAGTCAGCGGACGGAAACATTAAATTTACAAAACTATTGTGGAAAAGCGTGTAGGTAATT-GTCTGGGGGAAGCTATCGCATTACTACGATACAAAATCACAAACTACACGCGTGTTTGATGCTCTTTACCGCATAATTCTAAATGTTTTGGGTTTCCGTTCTAAGACAAACGCAGCCAATGCCGCTAACGATGATTTATGTTTTAGCTCATTTTTAATCAATCAAACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAGTGCCGTGTATCGTGTACTATGGACATCTGGCAAATCACAATAGAAACACACACACATACAAAGACGTGGTCGTAGAAGGAATCGTGGAGTCAGGTGATGGATTGTGGAGGTTAATTTGAATGTCGAAGCATAGTGAAAGTGGACGAACGACCCAAACG]

[+] EMBL BX626342             [CAGGTAGCGAACATCATCATGATCCGTAAGCGTATGTTCCAAAGCCCCGATACATCTATCCGGCATTTATGTGTGCCGAGTGATCGCGTTATCGATTATGAATGAAAAACAAAACTGACGCAAATGGCATGCTTTAACAACAAAAAAAAAACTCCCGTAACAACTGGAGAAACCGTTGATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAACAACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATGCGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCTGATCCGAGTGAGCCATGCAATTGAACACGTTGCGTTGCGAATTATGTTGTCATTTCTATAAGAACACGATCATCCGTTATTGAGGAACTTTCATTTTTGAGTAAGAAGAACACTCACCCTATGCGAAGCANGCATTGTTTGGGATTTTCCC AAAAAAGAAAGATAAACGAAATCTAAACGCACATGATTGTAGATCCTCACNCGATCGTAGTAACACATCGAACGTTGATTGCATGCCGGGTTTGTTTTT AAACAGTGCAATCCAATTGTATAGATTATGCACACACACACATACACATACACACCTACAGTCAGNGGACGG AACATCAAATTTTCCAAACTATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX612374             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTGGGATTTCCCCAAAAAAAGAAAGATAAACGAAATCTAAACGCACATGATTGTAGATCCTCACACGATCGTAGTAACACATCGAACGTTGATTGCATGCCGGGTTTGTTTTTAAAACAGTGCAATCCAATTGTATAGATTATG  CACACACACATACACATACACACCTACAGTCAGCGGACGGAAACATTAAATTTACAAAACTATTGTGGAAAAGCGTGTAGGTAATT GTCTGGGGGAAGCTATCGCATTACTACGATACAAAATCACAAACTACACGCGTGTTTGATGCTCTTTACCGCATAATTCTAAATGTTTTGGGTTTCCGTTCTAAGACAAACGCAGCCAATGCCGCTAACGATGATTTATGTTTTAGCTCATTTTTAATCAATCAAACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAGTGCCGTGTATCGTGTACTATGGACATCTGGCAAATCACAATAGAAACACACACAC                                                                                                       ]
[+] EMBL BM633006             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccgTGTAGATCCTCACACGATCGTAGTAACACATCGAACGTTGATTGCATGCCGGGTTTGTTTTTAAAACAGTGCAATCCAATTGTATAGATTATGCACACACACACATACACATACACACCTACAGTCAGCGGACGGAAACATTAAATTTACAAAACTATTGTGGAAAAGCGTGTAGGTAATTAGTCTGGGGGAAGCTATCGCATTACTACGATACAAAATCACAAACTACACGCGTATTTGATGCTCTTTACCGCATAATTCTAAATGTTTTGGGTTCCCGTTCTAAGACAAACGCAGCCAATGCCGCTAACGATGATTTATGTTTTAGCTCATTTTTAATCAATCAAACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATGGCACTTTTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAGTG CGTGTATCGTGTACTATGGACATCTGGCAAATCACAATAGAAACACACACAGATACAAAGACGTGGTCGTAGAAGGAATCGTGGAGTCAGGTGATGGATTGTGGAGGTTAATTTGAATGTCGAAGCATAGTGAAAGTGGACGAACGACCCAAACG]




>consensus_6427#0
CAGGTAGCGAACATCATCATGATCCGTAAGCGTATGTTCCAAAGCCCCGATACATCTATC
CGGCATTTATGTGTGCCGAGTGATCGCGTTATCGATTATGAATGAAAAACAAAACTGACG
CAAATGGCATGCTTTAACAACAAAAAAAAAACTCCCGTAACAACTGGAGAAACCGTTGAT
AAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAACAAC
TTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATGCGC
CTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCTGATCCGAGTGAGCCA
TGCAATTGAACACGTTGCGTTGCGAATTATGTTGTCATTTCTATAAGAACACGATCATCC
GTTATTGAGGAACTTTCATTTTTGAGTAAGAAGAACACTCACCCTATGCGAAGCANGCAT
TGTTTGGGATTTTCCCAAAAAAGAAAGATAAACGAAATCTAAACGCACATGATTGTAGAT
CCTCACACGATCGTAGTAACACATCGAACGTTGATTGCATGCCGGGTTTGTTTTTAAAAC
AGTGCAATCCAATTGTATAGATTATGCACACACACACATACACATACACACCTACAGTCA
GCGGACGGAAACATTAAATTTACAAAACTATTGTGGAAAAGCGTGTAGGTAATTGTCTGG
GGGAAGCTATCGCATTACTACGATACAAAATCACAAACTACACGCGTGTTTGATGCTCTT
TACCGCATAATTCTAAATGTTTTGGGTTTCCGTTCTAAGACAAACGCAGCCAATGCCGCT
AACGATGATTTATGTTTTAGCTCATTTTTAATCAATCAAACTACTTACACATCTCATAAG
CTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCACTATTTTCGA
AATTGAACATTTCATTGTTTAGAGATTAATTGGCAGTGCCGTGTATCGTGTACTATGGAC
ATCTGGCAAATCACAATAGAAACACACACACATACAAAGACGTGGTCGTAGAAGGAATCG
TGGAGTCAGGTGATGGATTGTGGAGGTTAATTTGAATGTCGAAGCATAGTGAAAGTGGAC
GAACGACCCAAACG

consensusID : consensus_6427#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [CAGAATCCCCCCAGGTTAATGGATCTTTACAAACCCAAAANAAAANAAACTTCCGTAACAACTGGAGAAACCGTTGATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAACAACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATGCGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCTGATCCGAGTGAGCCATGTAATTGGACACGTGCGTATGCGAATTNATGTAAGTCATATATCTNATAAGAACACGATCATCCGTTATTGAGGNAACTTTCATTTATTCGAGTTCACAGACAGAACACTCACCCTATGCGAAGCAGGGCCATTGTCTAGGGNATTATACCGCCAAAGAATNNAGAAACGATAAAAACGAAAATCTAAAAGGCACATATATNGTAGGAATTCCTTCAACACGGATTCGTAGGTAAACAACATTCCGAAACGTTGAATTGGCAATTGCCGAGGTTATGGTAATCATTCAAACAACAAGGTGGCNAACATCCCCCACAATTATGGTTAATTAGGACTNCACATAGCCACCAACACCACNCTTACAACATTACAACGACCTTAACAGGTCCAGGACGGGCCCGGGACAACCATTTAACATTTAACAAAACTTATATCGG]

[+] EMBL AL692282             [CAGAATCCCCCCAGGTTAATGGATCTTTACAAACCCAAAANAAAANAAACTTCCGTAACAACTGGAGAAACCGTTGATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAACAACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATGCGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCTGATCCGAGTGAGCCATGTAATTGGACACGTGCGTATGCGAATTNATGTAAGTCATATATCTNATAAGAACACGATCATCCGTTATTGAGGNAACTTTCATTTATTCGAGTTCACAGACAGAACACTCACCCTATGCGAAGCAGGGCCATTGTCTAGGGNATTATACCGCCAAAGAATNNAGAAACGATAAAAACGAAAATCTAAAAGGCACATATATNGTAGGAATTCCTTCAACACGGATTCGTAGGTAAACAACATTCCGAAACGTTGAATTGGCAATTGCCGAGGTTATGGTAATCATTCAAACAACAAGGTGGCNAACATCCCCCACAATTATGGTTAATTAGGACTNCACATAGCCACCAACACCACNCTTACAACATTACAACGACCTTAACAGGTCCAGGACGGGCCCGGGACAACCATTTAACATTTAACAAAACTTATATCGG]




>consensus_6427#1
CAGAATCCCCCCAGGTTAATGGATCTTTACAAACCCAAAANAAAANAAACTTCCGTAACA
ACTGGAGAAACCGTTGATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCT
ATCACGCTCATCAACAACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTA
CAACCATTTCGAATGCGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAAT
TCTGATCCGAGTGAGCCATGTAATTGGACACGTGCGTATGCGAATTNATGTAAGTCATAT
ATCTNATAAGAACACGATCATCCGTTATTGAGGNAACTTTCATTTATTCGAGTTCACAGA
CAGAACACTCACCCTATGCGAAGCAGGGCCATTGTCTAGGGNATTATACCGCCAAAGAAT
NNAGAAACGATAAAAACGAAAATCTAAAAGGCACATATATNGTAGGAATTCCTTCAACAC
GGATTCGTAGGTAAACAACATTCCGAAACGTTGAATTGGCAATTGCCGAGGTTATGGTAA
TCATTCAAACAACAAGGTGGCNAACATCCCCCACAATTATGGTTAATTAGGACTNCACAT
AGCCACCAACACCACNCTTACAACATTACAACGACCTTAACAGGTCCAGGACGGGCCCGG
GACAACCATTTAACATTTAACAAAACTTATATCGG

consensusID : consensus_6427#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 170
fasta sequence

                              [AACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCTCACTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAG]

[+] EMBL BX612555             [AACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCTCACTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAG]




>consensus_6427#2
AACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGG
ACCGTCATTGCTCACTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAAGGACCGTCAT
TGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6427#0      CAGGTAGCGAACATCATCATGATCCGTAAGCGTATGTTCCAAAGCCCCGATACATCTATC 60
consensus_6427#1      ------------------------------------------------------------
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      CGGCATTTATGTGTGCCGAGTGATCGCGTTATCGATTATGAATGAAAAACAAAACTGACG 120
consensus_6427#1      ---------------------------------------------CAGAATCCCCCCAGG 15
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      CAAATGGCATGCTTTAA---CAACAAAAAAAAAACTCCCGTAACAACTGGAGAAACCGTT 177
consensus_6427#1      TTAATGGATCTTTACAAACCCAAAANAAAANAAACTTCCGTAACAACTGGAGAAACCGTT 75
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      GATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAAC 237
consensus_6427#1      GATAAAGAGATTTTTTAAACACGACCGCAAGTAACTGTAAAATCTATCACGCTCATCAAC 135
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      AACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATG 297
consensus_6427#1      AACTTCTTTTTTATACGCGACTATCATCACGTAGGGAAATTTGTACAACCATTTCGAATG 195
consensus_6427#2      ---------------------------------------------------------AAC 3
                                                                               *  

consensus_6427#0      CGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCT-GATCCGAGTGA 356
consensus_6427#1      CGCCTACAGTACCGTGTTTTGAAGATCCTATTATGCGCATGCAATTCT-GATCCGAGTGA 254
consensus_6427#2      TACTTACA----CATCTCAT-AAGCTCCTCGTACGCTGGTGCAGGACGAGAAGTGAGCAA 58
                        * ****    * * *  * *** ****  ** **   ****   *  **   ***  *

consensus_6427#0      GCCATGCAATTGAACACGTTGCGT-TGCGAATTA-TGTT-GTCAT---TTCTATAAGAAC 410
consensus_6427#1      GCCATGTAATTGGACACGT-GCGTATGCGAATTNATGTAAGTCATATATCTNATAAGAAC 313
consensus_6427#2      GGACCGTCATTGCTCACTCCTCGTACGC----TGGTGCAGGACGAGAAGTGAGCAAGGAC 114
                      *    *  ****  ***    ***  **    *  **   * *           *** **

consensus_6427#0      -ACGATCAT-CCGTTATTGAG---GAA-CTTTCATTT--TTGAG-T----AAGAAGAACA 457
consensus_6427#1      -ACGATCAT-CCGTTATTGAG---GNAACTTTCATTTATTCGAG-TTCACAGACAGAACA 367
consensus_6427#2      CGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTAATTGGCAG---- 170
                          **    *  ** * **    * *  *******   * *** *        **    

consensus_6427#0      CTCACCCTATGCGAAGCANG--CATTGTTT--GGGATTTTCCCAAAAAAGAA-AGATAAA 512
consensus_6427#1      CTCACCCTATGCGAAGCAGGGCCATTGTCTAGGGNATTATACCGCCAAAGAATNNAGAAA 427
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      CGAAATCTAAACGCACATGATTGTAGATCCTCACACGATCGTAGTAACACATCGAACGTT 572
consensus_6427#1      CGA----TAAAAACG-AAAATCTAAAAGGCACATAT-ATNGTAGGAATTCCTTCAACACG 481
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      GATTGCATGCCGGGTTTGTTTTTAAAACAGTGCAATC-CAATTGTATAGATTATGCACAC 631
consensus_6427#1      GATTCGTAGGTAAACAACATTCCGAAACGTTGAATTGGCAATTGCCGAGGTTATG----- 536
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      ACACACATACACATACACACCTACAGTCAGCGGACGGAAACATTAAATTTACAAAACTAT 691
consensus_6427#1      ------GTAATCATTCAAACAACAAGGTGGCNAAC----------ATCCCCCACAATTAT 580
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      TGTGGAAAAGCG-TGTAGGTAATTGTCTGGGGGAAGCT-ATCGCATTACTACGATACAAA 749
consensus_6427#1      GGTTAATTAGGACTNCACATAGCCACCAACACCACNCTTACAACATTACAACGACCTTAA 640
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      ATCACAAACTACACGCGTGTTTGATGCTC-TTTACCGCATAATTCTAAATGTTTTGGGTT 808
consensus_6427#1      --CAGGTCCAGGACGGGCCCGGGACAACCATTTAACATTTAACAAAACTTATATCGG--- 695
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      TCCGTTCTAAGACAAACGCAGCCAATGCCGCTAACGATGATTTATGTTTTAGCTCATTTT 868
consensus_6427#1      ------------------------------------------------------------
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      TAATCAATCAAACTACTTACACATCTCATAAGCTCCTCGTACGCTGGTGCAGGACGAGAA 928
consensus_6427#1      ------------------------------------------------------------
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      GTGAGCAAGGACCGTCATTGCACTATTTTCGAAATTGAACATTTCATTGTTTAGAGATTA 988
consensus_6427#1      ------------------------------------------------------------
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      ATTGGCAGTGCCGTGTATCGTGTACTATGGACATCTGGCAAATCACAATAGAAACACACA 1048
consensus_6427#1      ------------------------------------------------------------
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      CACATACAAAGACGTGGTCGTAGAAGGAATCGTGGAGTCAGGTGATGGATTGTGGAGGTT 1108
consensus_6427#1      ------------------------------------------------------------
consensus_6427#2      ------------------------------------------------------------
                                                                                  

consensus_6427#0      AATTTGAATGTCGAAGCATAGTGAAAGTGGACGAACGACCCAAACG 1154
consensus_6427#1      ----------------------------------------------
consensus_6427#2      ----------------------------------------------