cluster # 6430

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Anopheles gambiae
cluster # 6430 cluster # 6430 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6430#0 length = 756 sequences # 4

consensus_6430#1 length = 706 sequences # 1

consensusID : consensus_6430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 756
fasta sequence

                              [TGCTAATTCTACCCCCGCCATCGCACAGATGCTTTTATTACGTTTTGTGATAACCACACCCAGGCAGCTCTAATAACTAAACTGGGTATTAATCAAACTAAAGAGAGGATGCAAGGAAACAAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCATAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGCGTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGGTGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTCACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGAGGAAGAACAAAAAACATACAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATCGAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAGATGAAGCAGAAATACAACAGCCAGAAGCAG]

[+] EMBL BX620425             [TGCTAATTCTACCCCCGCCATCGCACAGATGCTTTTATTACGTTTTGTGATAACCACACCCAGGCAGCTCTAATAACTAAACTGGGTATTAATCAAACTAAAGAGAGGATGCAAGGAAACAAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGTGCTGCCCCATACCCCCATAGCCATTGTAAAACCAACCAATAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGCGTAATTTTTCGGGTTTAAAGGGCGACAAATTCCAATTCGATTTCTGCTGTCTTGATTAGGTGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTCACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGAGGAAGAA AAAAAACATACAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATCGAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAA                                                                                                                                                                                              ]
[+] EMBL BX624177             [  CTAATTCTACCCCAGCCATCGCACAGATGCTTTTATTACGTTTTGTGATAACCACACACAGGCAGCTCTAATAACTAAACTGGGTATTAATCAAACTAAAGAGAGGATGCAAGGAAACAAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCATAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGCGTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGGTGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTCACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGAGGAAGAACAAAAAACATACAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATCGAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAG                              ]
[+] EMBL BX614516             [                                                                                                                     AACAAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCATAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGCGTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGGTGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTCACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGAGGAAGAACAAAAAACATACAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATCGAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAA                                                                                                                                                                                                  ]
[+] EMBL BX610960             [                                                                                                                                   AACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCATAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGCGTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGGTGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTCACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGAGGAAGAACAAAAAACATACAACAACACATACAATAAATC  ACAGGGGTGGAAACAATCGAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAGATGAAGCAGAAATACAACAGCCAGAAGCAG]




>consensus_6430#0
TGCTAATTCTACCCCCGCCATCGCACAGATGCTTTTATTACGTTTTGTGATAACCACACC
CAGGCAGCTCTAATAACTAAACTGGGTATTAATCAAACTAAAGAGAGGATGCAAGGAAAC
AAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCA
TAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGC
GTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGG
TGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTC
ACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGA
GGAAGAACAAAAAACATACAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATCG
AAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGG
GGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTT
AACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTT
TTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAG
GTAAAGATGAAGCAGAAATACAACAGCCAGAAGCAG

consensusID : consensus_6430#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [TAGTATCGGCATTCGACCGCACTGAAGATGAGAGTTGTCGATAAGAGGATGGGGCAGTCGCGTTCGCTGAAAGGGAAGCTATTAAATCAAATTAAATCAATTTACCGCGCCCCGATCCATATAACGCGCACGGGATGGTCCCACACCACTGCGGTGGGGTGCTTTGACGGTGTTTTACAACCCCTCCATCCGTCGCACAGTAATGTGTGTGTGTGTGTGTGTTTGTGTTGTAGTAGTGTAATAGTAGTAGTAATAGTAGTAAAAAAAACAAAAAAAGGAAGAAGAAAAAAAACTCCACCGTGTGAGGCTAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAGATGAAGCAGAAATACAACAGCAAGAAGCAGAAGAAGAAGGAAAAAACACGTGGAATTTAGGGCGCATTTATCTTTGTCGATAGCAAAAAAAAAAACGATACTTGTGCACACGAAAATGTCCGCGCGCGCGCTCAGCCTGTTGTAAAATCTATATGATTAGTCAAATAAAAACACTT]

[+] EMBL BX608615             [TAGTATCGGCATTCGACCGCACTGAAGATGAGAGTTGTCGATAAGAGGATGGGGCAGTCGCGTTCGCTGAAAGGGAAGCTATTAAATCAAATTAAATCAATTTACCGCGCCCCGATCCATATAACGCGCACGGGATGGTCCCACACCACTGCGGTGGGGTGCTTTGACGGTGTTTTACAACCCCTCCATCCGTCGCACAGTAATGTGTGTGTGTGTGTGTGTTTGTGTTGTAGTAGTGTAATAGTAGTAGTAATAGTAGTAAAAAAAACAAAAAAAGGAAGAAGAAAAAAAACTCCACCGTGTGAGGCTAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAGATGAAGCAGAAATACAACAGCAAGAAGCAGAAGAAGAAGGAAAAAACACGTGGAATTTAGGGCGCATTTATCTTTGTCGATAGCAAAAAAAAAAACGATACTTGTGCACACGAAAATGTCCGCGCGCGCGCTCAGCCTGTTGTAAAATCTATATGATTAGTCAAATAAAAACACTT]




>consensus_6430#1
TAGTATCGGCATTCGACCGCACTGAAGATGAGAGTTGTCGATAAGAGGATGGGGCAGTCG
CGTTCGCTGAAAGGGAAGCTATTAAATCAAATTAAATCAATTTACCGCGCCCCGATCCAT
ATAACGCGCACGGGATGGTCCCACACCACTGCGGTGGGGTGCTTTGACGGTGTTTTACAA
CCCCTCCATCCGTCGCACAGTAATGTGTGTGTGTGTGTGTGTTTGTGTTGTAGTAGTGTA
ATAGTAGTAGTAATAGTAGTAAAAAAAACAAAAAAAGGAAGAAGAAAAAAAACTCCACCG
TGTGAGGCTAGTGCAGATTGTGTGCAGTGTGCAATAAACGACGGGGCACAACAATACAAA
CAACAAACAAACAAACAAAAAAACACACACACACAACTACATTTAACTAAGTAAGAGCAT
AATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATTTTTAAGTATAATATTTA
TGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTAGGTAAAGATGAAGCAGA
AATACAACAGCAAGAAGCAGAAGAAGAAGGAAAAAACACGTGGAATTTAGGGCGCATTTA
TCTTTGTCGATAGCAAAAAAAAAAACGATACTTGTGCACACGAAAATGTCCGCGCGCGCG
CTCAGCCTGTTGTAAAATCTATATGATTAGTCAAATAAAAACACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6430#0      TGCTAATTCTACCCCCGCCATCGCACAGATGCTTTTATTACGTTTTGTGATAACCACACC 60
consensus_6430#1      ------------------------------------------------------------
                                                                                  

consensus_6430#0      CAGGCAGCTCTAATAACTAAACTGGGTATTAATCAAACTAAAGAGAGGATGCAAGGAAAC 120
consensus_6430#1      ------------------------------------------------------------
                                                                                  

consensus_6430#0      AAAATTTCGAAAACGATCAACACACATGTACAACGTGACATGCGCTGCCCCATACCCCCA 180
consensus_6430#1      ----------------------------------------------------------TA 2
                                                                                 *

consensus_6430#0      TAGCCATTGTAAAACCAACCAGTAGATGAAAGGGATTGTGAATTAAAATCGTACGTGCGC 240
consensus_6430#1      GTATCGGCATTCGACCGCACTGAAGATGAGAG---TTGTCGATAAGA---GGATGGGGCA 56
                          *    *   ***   * * ****** **   ****  ** * *   * * * *   

consensus_6430#0      GTAATTTTTCGGGTTTAAAGGGCGACATATTCCAATTCGATTTCTGCTGTCTTGATTAGG 300
consensus_6430#1      GTCGCGTTCGCTGAAAGGGAAGCTATTAAATCAAATTAAATCAAT-TTACCGCGCCCCGA 115
                      **    **    *        ** *   * ** ****  **   *  *  *  *    * 

consensus_6430#0      TGTGTGCGAAGTTCGCTTGTGTGTGTCCCCGGGCTGAACATATAAAAACTAAAACCAGTC 360
consensus_6430#1      TCCATATAACG--CGCACGGGATGGTCCCACACCACTGCGGTGGGGTGCTTTGAC-GGTG 172
                      *   *   * *  ***  * *   *****    *    *         **   **  ** 

consensus_6430#0      ACTAGCGTGTGTTGTGAGCACATTACTTAGATATATTTAAAGTGAAGAAAAGCGAAGAGA 420
consensus_6430#1      TTTTACAACCCCTCCATCCGTCGCACAGTAATGTGTGTGT-GTGTGTGTGTTTGTGTTGT 231
                        *  *      *     *     **    ** * * *   ***         *    * 

consensus_6430#0      GGAAGAACAAAAAACATA-CAACAACACATACAATAAATCAAAGAGGGGTGGAAACAATC 479
consensus_6430#1      AGTAGTGTAATAGTAGTAGTAATAGTA-GTAAAAAAAACAAAAAAAGGAAGAA------- 283
                       * **   ** *    **  ** *  *  ** ** ***  *** * **  * *       

consensus_6430#0      GAAGGGGAGCGGTAGAGCGGGGGAATAGTGCAGATTGTGTGCAGTGTGCAATAAACGACG 539
consensus_6430#1      GAAAAAAAACTCCACCGTGTGAGGCTAGTGCAGATTGTGTGCAGTGTGCAATAAACGACG 343
                      ***    * *   *  * * * *  ***********************************

consensus_6430#0      GGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATT 599
consensus_6430#1      GGGCACAACAATACAAACAACAAACAAACAAACAAAAAAACACACACACACAACTACATT 403
                      ************************************************************

consensus_6430#0      TAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATT 659
consensus_6430#1      TAACTAAGTAAGAGCATAATCACACTCATACCACTTATTTGTCTATAGCTAGTCAAAATT 463
                      ************************************************************

consensus_6430#0      TTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTA 719
consensus_6430#1      TTTAAGTATAATATTTATGTTTTTTAATTAATATTATTATAATTATTATTATTATATCTA 523
                      ************************************************************

consensus_6430#0      GGTAAAGATGAAGCAGAAATACAACAGCCAGAAGCAG----------------------- 756
consensus_6430#1      GGTAAAGATGAAGCAGAAATACAACAGCAAGAAGCAGAAGAAGAAGGAAAAAACACGTGG 583
                      **************************** ********                       

consensus_6430#0      ------------------------------------------------------------
consensus_6430#1      AATTTAGGGCGCATTTATCTTTGTCGATAGCAAAAAAAAAAACGATACTTGTGCACACGA 643
                                                                                  

consensus_6430#0      ------------------------------------------------------------
consensus_6430#1      AAATGTCCGCGCGCGCGCTCAGCCTGTTGTAAAATCTATATGATTAGTCAAATAAAAACA 703
                                                                                  

consensus_6430#0      ---
consensus_6430#1      CTT 706