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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6434#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 876 fasta sequence
[ATTTCCGACCAGTTCCAAATTCCACCGCTGGAACCGCTCGCCCTCGCGACGGTCAACATGGACCGGGGGGCCGAGCTGAAGGCCACCTTCAGCGAGCTGCTCGTGTCGGGGCCGAGCAAGTTCAAGATCGACAACTTGAAGGTCAACATCGAGAAGCTGATCTTCGACTTTAACATCTTCCTGCCGAAGCTGTCCTTCAAGGGAAAGTACGATCTGAAGATTAAGCTGCTGCTGCTTAACATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCTGCTGTGCGAAAAGTACGCCAAGGACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATTGGGTGTCTGTTGGTTTGTGTCGTCCTGGGAAGGAGAAGGAGTGAGATGATCTGTGATTCTGGTGCGTACGAGATGTCGCATCTTGGTTTGGAGGCTGCGTACCCACAAAAAAGCGCAGCGTTTTACGCGTTTTAAAATGTACCTTTTTGTCTAGGTCTGTAGCTCTAGTAAGACACGGTGTAACCCGTGTGTCTGTGTGTCTGTAGTACGGTATTCAATTACTGGGAGGGTAATAAGTAATAAAAAACACAATGGTTGTTTTACAATAAAGCTTAGTGGACGCTCGGAA]
[+] EMBL BX617476 [ATTTCCGACCAGTTCCAAATTCCACCGCTGGAACCGCTCGCCCTCGCGACGGTCAACATGGACCGGGGGGCCGAGCTGAAGGCCACCTTCAGCGAGCTGCTCGTGTCGGGGCCGAGCAAGTTCAAGATCGACAACTTGAAGGTCAACATCGAGAAGCTGATCTTCGACTTTAACATCTTCCTGCCGAAGCTGTCCTTCAAGGGAAAGTACGATCTGAAGATTAAGCTGCTGCTGCTTAACATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCTGCTGTGCGAAAAGTACGCCAAGGACG ]
[+] EMBL BX618648 [ CGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCTGCTGTGCGAAAAGTACGCCAAGGACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATTGGGTGTCTGTTGGTTTGTGTCGTCCTGGGAAGGAGAAGGAGTGAGATGATCTGTGATTCTGGTGCGTACGAGATGTCGCATCTTGGTTTGGAGGCTGCGTACCCACAAAAAAGCGCAGCGTTTTACGCGTTTTAAAA ]
[+] EMBL BX609286 [ GAAGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATTGGGTGTCTGTTGGTTTGTGTCGTCCTGGGAAGGAGAAGGAGTGAGATGATCTGTGATTCTGGTGCGTACGAGATGTCGCATCTTGTTTTGGAGGCTGCGTACCCACAAAAAAGCGCAGCGTTTTACGCGTTTAAAAATGTACCTTTTTGTCTAGGTCTGTAGCTCTAGTAAGACACGGTGTAACCCGTGTGTCTGTGTGTCTGTAGTACGGTATTCAATTACTGGGAGGGTAATAAGTAATAAAAAACACAATGGTTGTTTTACAATAAAGCTTAGTGGACGCTCGGAA]
consensusID : consensus_6434#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence
[CAAGAATCCCGNGGTTAAAGTACGCCAAGGGACGGCAAGGAGTACGTGCGCGTGTGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGTCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATNTGGGTGTCTAGTAAGGTCANGTAGTCAGTCCTGGGAAGGAGNACAGTGAGTGAGATGATCTGTGATTCTGGTTGCGGTACGAGCATGTCGCCATCTTGCGGCATTCGGAGGCTGCGTTACCCACCAAAAACAAGCGCACGNCGGTATATNACCGACGTTTAACANACATTGTACCCTTTACATAGTCCTAGGGTCTGTAGCCTCTTAGATAAGGAACACCGNGTGTAACCCGATGTGTCTTGTAGNTAGTCTTGATAGATACCGGGNNACTTTCACAGTTTTAACCTTCGGNGGGCAGAGGGGTTNAAATTNAAGGTTACACCACACCNCACAACCACACCCNATTGGGGCTCATAGNANATTTACCAAACTTCACACAGGCCCTTCTCACANNTTGANAAACGCCTNCCGGGCGACAAAAGCCNCGTGACAGGTACTTACACANANCAGCAACACACACANACAGCACCCAAACAATCCTTCAGCNCAACACCG]
[+] EMBL AL692257 [CAAGAATCCCGNGGTTAAAGTACGCCAAGGGACGGCAAGGAGTACGTGCGCGTGTGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGTCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATNTGGGTGTCTAGTAAGGTCANGTAGTCAGTCCTGGGAAGGAGNACAGTGAGTGAGATGATCTGTGATTCTGGTTGCGGTACGAGCATGTCGCCATCTTGCGGCATTCGGAGGCTGCGTTACCCACCAAAAACAAGCGCACGNCGGTATATNACCGACGTTTAACANACATTGTACCCTTTACATAGTCCTAGGGTCTGTAGCCTCTTAGATAAGGAACACCGNGTGTAACCCGATGTGTCTTGTAGNTAGTCTTGATAGATACCGGGNNACTTTCACAGTTTTAACCTTCGGNGGGCAGAGGGGTTNAAATTNAAGGTTACACCACACCNCACAACCACACCCNATTGGGGCTCATAGNANATTTACCAAACTTCACACAGGCCCTTCTCACANNTTGANAAACGCCTNCCGGGCGACAAAAGCCNCGTGACAGGTACTTACACANANCAGCAACACACACANACAGCACCCAAACAATCCTTCAGCNCAACACCG]
consensusID : consensus_6434#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence
[GGCAGAATCCGCACGAGNGTGAAGATTAAGCAGCAGCAGCTTAATATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCTGCTGTGCGAAAAGTACGCCAAGGACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATTGGGTGTCTGTTGGTTTGTGTCGTCCTGGGAAGGAGAAGGAGTGAGATGATCTGTGATTCTGGTGCGTACGAGATGTCGCATCTTGGTTTGGAGGCTGCGTACCCACAAAAAAGCGCAGCGTTTTACGCGTTTAAAAATGTACCTTTTNGTCTAGGTCTGTAGCTCTAGTAAGACACGGTGTAACCCGTGTGTCTGTGTGTCTGTAGTACGGTATTCAATTACTTGGGGAAGGGGNTAATTTACAGGTAAATTACAGAGAGAGAGCACAAATGGGGTTGGTGTTTGAACAAATTAGAAGAANNAGAGCACAGAGAGNGANTCAACCAGGGCCATTGTTGGCCGGACCGCAAAAGCGTTAA]
[+] EMBL BX468260 [GGCAGAATCCGCACGAGNGTGAAGATTAAGCAGCAGCAGCTTAATATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCTGCTGTGCGAAAAGTACGCCAAGGACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGGTGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCGTCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGCTGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCATGCAGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATTGGGTGTCTGTTGGTTTGTGTCGTCCTGGGAAGGAGAAGGAGTGAGATGATCTGTGATTCTGGTGCGTACGAGATGTCGCATCTTGGTTTGGAGGCTGCGTACCCACAAAAAAGCGCAGCGTTTTACGCGTTTAAAAATGTACCTTTTNGTCTAGGTCTGTAGCTCTAGTAAGACACGGTGTAACCCGTGTGTCTGTGTGTCTGTAGTACGGTATTCAATTACTTGGGGAAGGGGNTAATTTACAGGTAAATTACAGAGAGAGAGCACAAATGGGGTTGGTGTTTGAACAAATTAGAAGAANNAGAGCACAGAGAGNGANTCAACCAGGGCCATTGTTGGCCGGACCGCAAAAGCGTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6434#0 ATTTCCGACCAGTTCCAAATTCCACCGCTGGAACCGCTCGCCCTCGCGACGGTCAACATG 60
consensus_6434#2 ------------------------------------------------------------
consensus_6434#1 ------------------------------------------------------------
consensus_6434#0 GACCGGGGGGCCGAGCTGAAGGCCACCTTCAGCGAGCTGCTCGTGTCGGGGCCGAGCAAG 120
consensus_6434#2 ------------------------------------------------------------
consensus_6434#1 ------------------------------------------------------------
consensus_6434#0 TTCAAGATCGACAACTTGAAGGTCAACATCGAGAAGCTGATCTTCGACTTTAACATCTTC 180
consensus_6434#2 ------------------------------------------------------------
consensus_6434#1 ------------------------------------------------------------
consensus_6434#0 CTGCCGAAGCTGTCCTTCAAGGGAAAGTACGATC-TGAAGATTAAGCTGCTGCTGCTTAA 239
consensus_6434#2 ----------------GGCAGAATCCGCACGAGNGTGAAGATTAAGCAGCAGCAGCTTAA 44
consensus_6434#1 ------------------------------------------------------------
consensus_6434#0 CATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCT 299
consensus_6434#2 TATTGCCGGCGTTGGCGACCTTTCCGGAGTGATCGAAAACAACCAGGCACGGGTGAAGCT 104
consensus_6434#1 -----------------------------------------------------CAAGAAT 7
* *
consensus_6434#0 GCTGTGCGAAAAGTACGCCAAGG-ACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGG 358
consensus_6434#2 GCTGTGCGAAAAGTACGCCAAGG-ACGGCAAGGAGTACGTGCGCGTGAAGAAGCTGGTGG 163
consensus_6434#1 CCCGNGGTTAAAGTACGCCAAGGGACGGCAAGGAGTACGTGCGCGTGT-GAAGCTGGTGG 66
* * * ************** *********************** ***********
consensus_6434#0 TGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCG 418
consensus_6434#2 TGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGGCGATCCCG 223
consensus_6434#1 TGCGCATCCAGATCGAGAAGGGGCGGTTCGACATGAAGGACCTGTTCCGGGTCGATCCCG 126
*************************************************** ********
consensus_6434#0 TCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGC 478
consensus_6434#2 TCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGC 283
consensus_6434#1 TCCTCAGCCAGGCCGGCAACCAGTTTATCAACGAAAACTCGCGCCTCTTCCTGGACGAGC 186
************************************************************
consensus_6434#0 TGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCA 538
consensus_6434#2 TGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCA 343
consensus_6434#1 TGACGCCCGGGCTGGAGCGCAGCCTGTCGGACACGTTCAAGGCGACCGCGAACGAGATCA 246
************************************************************
consensus_6434#0 TGCAG-CAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATT-GGGTGTCT- 595
consensus_6434#2 TGCAG-CAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATT-GGGTGTCT- 400
consensus_6434#1 TGCAGGCAGGCGACGTTCGACGAGATCTTCCCTGCGTAAGTGTCTGCATNTGGGTGTCTA 306
***** ******************************************* ********
consensus_6434#0 GTTGGTTTGTGTCGTC----CTGGGAAGGAGAAG---GAGTGAGATGATCTGTGATTCTG 648
consensus_6434#2 GTTGGTTTGTGTCGTC----CTGGGAAGGAGAAG---GAGTGAGATGATCTGTGATTCTG 453
consensus_6434#1 GTAAGGTCANGTAGTCAGTCCTGGGAAGGAGNACAGTGAGTGAGATGATCTGTGATTCTG 366
** * * ** *** *********** * ***********************
consensus_6434#0 GT-GCG-TACGAG-ATGTCGC-ATCTTG----GTTTGGAGGCTGCGT-ACCCACAAAAAA 699
consensus_6434#2 GT-GCG-TACGAG-ATGTCGC-ATCTTG----GTTTGGAGGCTGCGT-ACCCACAAAAAA 504
consensus_6434#1 GTTGCGGTACGAGCATGTCGCCATCTTGCGGCATTCGGAGGCTGCGTTACCCACCAAAAA 426
** *** ****** ******* ****** ** *********** ****** *****
consensus_6434#0 -----GCGCAGCGTTTTACG-----CGTTTTAAAA----TGTACCTTTTT----GTCT-- 739
consensus_6434#2 -----GCGCAGCGTTTTACG-----CGTTTAAAAA----TGTACCTTTTN----GTCT-- 544
consensus_6434#1 CAAGCGCACGNCGGTATATNACCGACGTTTAACANACATTGTACCCTTTACATAGTCCTA 486
** * ** * ** ***** * * ****** *** ***
consensus_6434#0 AGGTCTGTAGCTCT-------AGTAAGACACGGTGTAACCCG-TGTGTCT----GTGTGT 787
consensus_6434#2 AGGTCTGTAGCTCT-------AGTAAGACACGGTGTAACCCG-TGTGTCT----GTGTGT 592
consensus_6434#1 GGGTCTGTAGCCTCTTAGATAAGGAACACCGNGTGTAACCCGATGTGTCTTGTAGNTAGT 546
********** ** ** ** ********** ******* * **
consensus_6434#0 CT------GTAGTACGGTATT----CAATTA----CT--GGGAGGGTAATAAGTAATAA- 830
consensus_6434#2 CT------GTAGTACGGTATT----CAATTA----CTTGGGGAAGGGGNTAATTTACAGG 638
consensus_6434#1 CTTGATAGATACCGGGNNACTTTCACAGTTTTAACCTTCGGNGGGCAGAGGGGTTNAAAT 606
** ** * * * ** ** ** ** * * *
consensus_6434#0 -AAAACACAATGGTTGTTTTACAATAAAGCTTAGTGGACGCTCGGAA------------- 876
consensus_6434#2 TAAATTACAGAGAGAGAGC-ACAAATGGGGTTGGTGTTTGAACAAATTAGAAGAANNAGA 697
consensus_6434#1 TNAAGGTTACACCACACCNCACAACCACACCCNATTGGGGCTCATAGNANATTTACCAAA 666
** * **** * * * *
consensus_6434#0 ------------------------------------------------------------
consensus_6434#2 GCACAGAGAGNGANTCA----ACCAGGGCCATTGTTGGCCGGACCGCAAAAGCGTTAA-- 751
consensus_6434#1 CTTCACACAGGCCCTTCTCACANNTTGANAAACGCCTNCCGGGCGACAAAAGCCNCGTGA 726
consensus_6434#0 ------------------------------------------------------------
consensus_6434#2 ------------------------------------------------------------
consensus_6434#1 CAGGTACTTACACANANCAGCAACACACACANACAGCACCCAAACAATCCTTCAGCNCAA 786
consensus_6434#0 -----
consensus_6434#2 -----
consensus_6434#1 CACCG 791
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||