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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1161 fasta sequence
[CCTGTTGCTGTGTGACGTCATCGCCTGGATAGTGATATTCGGTTGCATCGCCAAAGGGGTGCAATCGGTCGGTAAGGTCGTTTACTGTACTGCCACCTTTCCGTTCGCGATCCTGGCGGTGTTACTTGTGCGCGGTATCACGCTTCCCGGTGCGCTGGAGGGCATCAAGTTCTACATAATGCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCG-AGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATAC-TTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTCACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTTCTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGATCTACGGGTGTGAGCAGTTCGTGCGCGACGTCGAGTTCATGATCGATCGCAAGGTGGAACGGTTTTGGATAGTTTCATGGAAGTACATCACACCGATCGTGCTGACTTTTATTTTCACTACAACGATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTATTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTTCAGTGTTTGCGTCTTACAAGCTCCTTCACACGAAGGGTTCATTGACAAAGCGTTTTAAAACCCAACTCAAAGCACAGGATTGGGGCCCTGCCGATGATGAACTGCGTGCATTGTGGAGTGACAGTGTTGCATTACGTTCAGTGCGTTAAATAAACGATTT]
[+] EMBL BX623930 [CCTGTTGCTGTGTGACGTCATCGCCTGGATAGTGATATTCGGTTGCATCGCCAAAGGGGTGCAATCGGTCGGTAAGGTCGTTTACTGTACTGCCACCTTTCCGTTCGCGATCCTGGCGGTGTTACTTGTGCGCGGTATCACGCTTCCCGGTGCGCTGGAGGGCATCAAGTTCTACATAATGCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAAGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTANGATACTTTTTCACATCAAA ]
[+] EMBL BM639935 [ ccgGTTCTACATAATGCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCG AGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATAC TTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTCACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTTCTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGATCTACGGGTGTGAGCAGTTCGT ]
[+] EMBL BX610135 [ TCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATAC TTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTCACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTTCTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGATCTACGGGTGTGAGCAGTTCGTGCGCGACGTCGAGTTCATGATCGATCGCAAGGTGGAACGGTTTTGGATAGTTTCATGGAAGTACATCACACCGATCGTGCTGACTTTTATTTTCACTACAACGATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTATTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTTCAGTGTTTGCG ]
[+] EMBL BX617150 [ GATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTATTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTCCAGTGTTTGCGTCTTACAAGCTCCTTCACACGAAGGGTTCATTGACAAAGCGTTTTAAAACCCAACTCAAAGCACAGGATTGGGGCCCTGCCGATGATGAACTGCGTGCATTGTGGAGTGACAGTGTTGCATTACGTTCAGTGCGTTAAATAAACGATTT]
consensusID : consensus_6435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[CCCCGAGTTNAATGCCCAGTGGAGCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTACACCGTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTANNATACTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATT]
[+] EMBL AL692247 [CCCCGAGTTNAATGCCCAGTGGAGCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTACACCGTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTANNATACTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6435#0 CCTGTTGCTGTGTGACGTCATCGCCTGGATAGTGATATTCGGTTGCATCGCCAAAGGGGT 60
consensus_6435#1 ------------------------------------------------------------
consensus_6435#0 GCAATCGGTCGGTAAGGTCGTTTACTGTACTGCCACCTTTCCGTTCGCGATCCTGGCGGT 120
consensus_6435#1 ------------------------------------------------------------
consensus_6435#0 GTTACTTGTGCGCGGTATCACGCTTCCCGGTGCGCTGGAGGGCATCAAGTTCTACATAAT 180
consensus_6435#1 ------------------------------------------CCCCGAGTTN-----AAT 13
* * **** ***
consensus_6435#0 GCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTT 240
consensus_6435#1 GCCC-AGTGGAGC-AGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTT 71
**** ******** **********************************************
consensus_6435#0 CTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAA 300
consensus_6435#1 CTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAA 131
************************************************************
consensus_6435#0 AAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACT 360
consensus_6435#1 AAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACT 191
************************************************************
consensus_6435#0 GGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGT 420
consensus_6435#1 GGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGT 251
************************************************************
consensus_6435#0 AGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAG 480
consensus_6435#1 AGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAG 311
************************************************************
consensus_6435#0 TATGCTTCCGCTGT-CACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCG 539
consensus_6435#1 TATGCTTCCGCTGTACACCG-TGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCG 370
************** ***** ***************************************
consensus_6435#0 GCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTAC 599
consensus_6435#1 GCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTAC 430
************************************************************
consensus_6435#0 CGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTT---CTTCTTTTCC 656
consensus_6435#1 CGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTANNATACTTCTTTTCC 490
******************************************** **********
consensus_6435#0 TGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGT 716
consensus_6435#1 TGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGT 550
************************************************************
consensus_6435#0 ATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGA 776
consensus_6435#1 ATTCGGGGTCCATT---------------------------------------------- 564
**************
consensus_6435#0 TCTACGGGTGTGAGCAGTTCGTGCGCGACGTCGAGTTCATGATCGATCGCAAGGTGGAAC 836
consensus_6435#1 ------------------------------------------------------------
consensus_6435#0 GGTTTTGGATAGTTTCATGGAAGTACATCACACCGATCGTGCTGACTTTTATTTTCACTA 896
consensus_6435#1 ------------------------------------------------------------
consensus_6435#0 CAACGATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTA 956
consensus_6435#1 ------------------------------------------------------------
consensus_6435#0 TTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTTCAGTGTTTGCGTCTT 1016
consensus_6435#1 ------------------------------------------------------------
consensus_6435#0 ACAAGCTCCTTCACACGAAGGGTTCATTGACAAAGCGTTTTAAAACCCAACTCAAAGCAC 1076
consensus_6435#1 ------------------------------------------------------------
consensus_6435#0 AGGATTGGGGCCCTGCCGATGATGAACTGCGTGCATTGTGGAGTGACAGTGTTGCATTAC 1136
consensus_6435#1 ------------------------------------------------------------
consensus_6435#0 GTTCAGTGCGTTAAATAAACGATTT 1161
consensus_6435#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||