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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1014 fasta sequence
[GGGCAGAATCCCCCGACGGTAGCATCGGCAGCTCCTACCTGGTTCCGGATTGACATGGAAACGATCATCGATGCGACCAAGTGCGGCAACTTGTGCCCGATTCATTAACCATAGTTGCAATACCCAACTGTTACGCTAAAGTGATTACGATACGAGTCGGAGAAAAAGATCGTACATACTACTCGAAGCAACCGATCGGGGTGAACTGAGGAGATTACGTACGATACAAGTNCCCTGCTCGAGTGACGAAAAGATCCCTATGCTATGTGCGGTGCTGCCCGGTNTGCCTGCTGGTACACTCAACTAAAACCACACACGCTTCAAACTGATCNGTTGCTGCAACTGCCCCGAGCATAGTTGTCTNTGGCCCTGGGNCATCNGGCGCAGTGCAGCAGCAGCCAGTAAGCTGGCGCAATAACTNGGACCCATATTGGCCCCACAATANCTATAGTCACAATATTNTACNGTCAGACTTAGTAATTCAATNCTAACACTAAATAATATAAAAAAACCGTAAAAGACCAATAANACAAATGCCGCCAAANATANAGGCTACAAAAACAAAGGAANTACNAACACCACAACAACCCTAGGGTACNCCACCCGGCNCAATACTAGTCNAGAACNAAGCACACGCGAACAACNCGCACACCTNTGGGACAATNACCTANAGGCAAANCACTACACAAGGNNNNNAACACGGCATNAAGAACANCAGGGATTANNGCCCCCAANGACACCCGNGCCCNGGCCGCCANAGCGACCCCAAGCACCAAGATNCNAGTNCCNANAGAGCTNCNGCCCACTACCANNACAACCCGCCAAAACGCATNCNACACACACACCACCAANCGCACCNCACCCCCNCCACACNCCACATCTAGGCACCGCCACCCCCGGNCTCACCCCTGGGNTCANCCGGCCCGCACGTCTCTCCCGGANCCCAAANTAACNCGCNTTAAANCAACCACCCACACNNCCCGACCCNCCCACNCGCCANCCCCGCCCCCANCC]
[+] EMBL AL694897 [GGGCAGAATCCCCCGACGGTAGCATCGGCAGCTCCTACCTGGTTCCGGATTGACATGGAAACGATCATCGATGCGACCAAGTGCGGCAACTTGTGCCCGATTCATTAACCATAGTTGCAATACCCAACTGTTACGCTAAAGTGATTACGATACGAGTCGGAGAAAAAGATCGTACATACTACTCGAAGCAACCGATCGGGGTGAACTGAGGAGATTACGTACGATACAAGTNCCCTGCTCGAGTGACGAAAAGATCCCTATGCTATGTGCGGTGCTGCCCGGTNTGCCTGCTGGTACACTCAACTAAAACCACACACGCTTCAAACTGATCNGTTGCTGCAACTGCCCCGAGCATAGTTGTCTNTGGCCCTGGGNCATCNGGCGCAGTGCAGCAGCAGCCAGTAAGCTGGCGCAATAACTNGGACCCATATTGGCCCCACAATANCTATAGTCACAATATTNTACNGTCAGACTTAGTAATTCAATNCTAACACTAAATAATATAAAAAAACCGTAAAAGACCAATAANACAAATGCCGCCAAANATANAGGCTACAAAAACAAAGGAANTACNAACACCACAACAACCCTAGGGTACNCCACCCGGCNCAATACTAGTCNAGAACNAAGCACACGCGAACAACNCGCACACCTNTGGGACAATNACCTANAGGCAAANCACTACACAAGGNNNNNAACACGGCATNAAGAACANCAGGGATTANNGCCCCCAANGACACCCGNGCCCNGGCCGCCANAGCGACCCCAAGCACCAAGATNCNAGTNCCNANAGAGCTNCNGCCCACTACCANNACAACCCGCCAAAACGCATNCNACACACACACCACCAANCGCACCNCACCCCCNCCACACNCCACATCTAGGCACCGCCACCCCCGGNCTCACCCCTGGGNTCANCCGGCCCGCACGTCTCTCCCGGANCCCAAANTAACNCGCNTTAAANCAACCACCCACACNNCCCGACCCNCCCACNCGCCANCCCCGCCCCCANCC]
consensusID : consensus_6442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence
[TGAAGGGTACGGTGGCCGCGAACCACCTCACCAACCTCGAGCTGGCCAAGGCGGTTGCCAAGATGCAGGGCATCTCGCGCGAGGCCCGCTCGAACCAGCGCCGGCTGCTGAACGCGTTCGGGGCGAGCACCGAGTCGGAGCTGCTCAAGTTTAACCAGCTCAAGTTCCGCAAGAAGCAGCTCAAGTTTGCGAAATCGGCCATCCACGACTGGGGCCTGTTCGCGATGGAACCGATCGCGGCGGACGAGATGGTGATCGAGTACGTCGGGCAGATGGTGCGACCGTCGGTGGCGGATCTGCGCGAAACCAAGTACGAAGCGATCGGCATCGGCAGCTCCTACCTGTTCCGGATCGACATGGAAACGATCATCGATGCGACCAAGTGCGGCAACTTGGCCCGATTCATTAACCATAGTTGCAATCCCAACTGTTACGCTAAAGTGATTACGATCGAGTCGGAGAAAAAGATCGTCATCTACTCGAAGCAACCGATCGGGGTGAACGAGGAGATTACGTACGACTACAAGTTCCCGCTCGAGGACGAAAAGATCCCTTGCTTGTGCGGTGCGCCCGGTTGCCGCGGTACACTCAACTAAACCCACACACGCTTCAAACGATCGTGCGCAACGCCGGATGTGTCTGCCCCGGCATCGGGAGGAGAGAGCAGTAGCGGCAATACTGCCCATTGCCCAATTTATGTACATTTTTGTAGCTGTATATATACATATATTTACGTTTTCATTAGGCGCAAATGCTCNACAGATCAAAACACTGGTCCCGTATCTGTGCGGNGGAACCGTCTGCATCTGCACATTAGTTTACCGCT]
[+] EMBL BX623372 [TGAAGGGTACGGTGGCCGCGAACCACCTCACCAACCTCGAGCTGGCCAAGGCGGTTGCCAAGATGCAGGGCATCTCGCGCGAGGCCCGCTCGAACCAGCGCCGGCTGCTGAACGCGTTCGGGGCGAGCACCGAGTCGGAGCTGCTCAAGTTTAACCAGCTCAAGTTCCGCAAGAAGCAGCTCAAGTTTGCGAAATCGGCCATCCACGACTGGGGCCTGTTCGCGATGGAACCGATCGCGGCGGACGAGATGGTGATCGAGTACGTCGGGCAGATGGTGCGACCGTCGGTGGCGGATCTGCGCGAAACCAAGTACGAAGCGATCGGCATCGGCAGCTCCTACCTGTTCCGGATCGACATGGAAACGATCATCGATGCGACCAAGTGCGGCAACTTGGCCCGATTCATTAACCATAGTTGCAATCCCAACTGTTACGCTAAAGTGATTACGATCGAGTCGGAGAAAAAGATCGTCATCTACTCGAAGCAACCGATCGGGGTGAACGAGGAGATTACGTACGACTACAAGTTCCCGCTCGAGGACGAAAAGATCCCTTGCTTGTGCGGTGCGCCCGGTTGCCGCGGTACACTCAACTAAACCCACACACGCTTCAAACGATCGTGCGCAACGCCGGATGTGTCTGCCCCGGCATCGGGAGGAGAGAGCAGTAGCGGCAATACTGCCCATTGCCCAATTTATGTACATTTTTGTAGCTGTATATATACATATATTTACGTTTTCATTAGGCGCAAATGCTCNACAGATCAAAACACTGGTCCCGTATCTGTGCGGNGGAACCGTCTGCATCTGCACATTAGTTTACCGCT]
consensusID : consensus_6442#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 754 fasta sequence
[GAATCGCCCGAGGTTCACTGGCCGATTCATTAACCATAGTTGCAATCCCAACTGTTACGCTAAAGTGATTACGATCGAGTCGGAGAAAAAGATCGTCATCTACTCGAAGCAACCGATCGGGGTGAACGAGGAGATTACGTACGACTACAAGTTCCCGCTCGAGGACGAAAAGATCCCTTGCTTGTGCGGTGCGCCCGGTTGCCGCGGTACACTCAACTAAACCCACACACGCTTCAAACGATCGTGCGCAACGCCGGATGTGTCTGCCCCGGCATCGGGAGGAGAGAGCAGTAGCGGCAATACTGCCCATTGCCCAATTTATGTACATTTTTGTAGCTGTATATATACATATATTTACGTTTTCATTAGGCGCAAATGCTCAACAGATCAAAACACTGGTCCCGTATCTGTGCGGCGGAACCGTCTGCATCTGCACATTAGTTTACCGCTACACAGCTAGCCAGCCCGCCAGCCAGCCAGTCAGTCATCAGTCCCTCACACCCACTCACACAAGAGACAGAACATTGAGACCGTTATTGTTCGCTTTCCGTCATACGTTAGACACACTCGGGTGTCGGTCGTGTCGTAATGCAAGAACACACTACAAAAAATACCAACAGGAAAGTGAATGTGAACTCTTTTTTTGTAGCTAGTTTTACCTGTTGCGTTCCGTTCTATTCCCCTCCCTCCTCGTTGAATGTGTTTTTTACAACGTTTCCTAGTTTGTTTTCGAAATCATATGTGCATTCAGGAA]
[+] EMBL AL930939 [GAATCGCCCGAGGTTCACTGGCCGATTCATTAACCATAGTTGCAATCCCAACTGTTACGCTAAAGTGATTACGATCGAGTCGGAGAAAAAGATCGTCATCTACTCGAAGCAACCGATCGGGGTGAACGAGGAGATTACGTACGACTACAAGTTCCCGCTCGAGGACGAAAAGATCCCTTGCTTGTGCGGTGCGCCCGGTTGCCGCGGTACACTCAACTAAACCCACACACGCTTCAAACGATCGTGCGCAACGCCGGATGTGTCTGCCCCGGCATCGGGAGGAGAGAGCAGTAGCGGCAATACTGCCCATTGCCCAATTTATGTACATTTTTGTAGCTGTATATATACATATATTTACGTTTTCATTAGGCGCAAATGCTCAACAGATCAAAACACTGGTCCCGTATCTGTGCGGCGGAACCGTCTGCATCTGCACATTAGTTTACCGCTACACAGCTAGCCAGCCCGCCAGCCAGCCAGTCAGTCATCAGTCCCTCACACCCACTCACACAAGAGACAGAACATTGAGACCGTTATTGTTCGCTT ]
[-] EMBL BX609761 [ ATACATATATTTACGTTTTCATTAGGCGCAAATGCTCAACAGATCAAAACACTGGTCCCGTATCTGTGCGGCGGAACCGTCTGCATCTGCACATTAGTTTACCGCTACACAGCTAGCCAGCCCGCCAGCCAGCCAGTCAGTCATCAGTCCCTCACACCCACTCACACAAGAGACAGAACATTGAGACCGTT TTGTTCGCTTTCCGTCATACGTTAGACACACTCGGGTGTCGGTCGTGTCGTAATGCAAGAACACACTACAAAAAATACCAACAGGAAAGTGAATGTGAACTCTTTTTTTGTAGCTAGTTTTACCTGTTGCGTTCCGTTCTATTCCCCTCCCTCCTCGTTGAATGTGTTTTTTACAACGTTTCCTAGTTTGTTTTCGAAATCATATGTGCA ]
[-] EMBL BX609834 [ CACTACAAAAAATACCAACAGGAAAGTGAATGTGAACTCTTTTTTTGTAGCTAGTTTTACCTGTTGCGTTCCGTTCTATTCCCCTCCCTCCTCGTTGAATGTGTTTTTTACAACGTTTCCTAGTTTGTTTTCGAAATCATATGTGCCTTCAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6442#1 TGAAGGGTACGGTGGCCGCGAACCACCTCACCAACCTCGAGCTGGCCAAGGCGGTTGCCA 60
consensus_6442#2 ------------------------------------------------------------
consensus_6442#0 ------------------------------------------------------------
consensus_6442#1 AGATGCAGGGCATCTCGCGCGAGGCCCGCTCGAACCAGCGCCGGCTGCTGAACGCGTTCG 120
consensus_6442#2 ------------------------------------------------------------
consensus_6442#0 ------------------------------------------------------------
consensus_6442#1 GGGCGAGCACCGAGTCGGAGCTGCTCAAGTTTAACCAGCTCAAGTTCCGCAAGAAGCAGC 180
consensus_6442#2 ------------------------------------------------------------
consensus_6442#0 ------------------------------------------------------------
consensus_6442#1 TCAAGTTTGCGAAATCGGCCATCCACGACTGGGGCCTGTTCGCGATGGAACCGATCGCGG 240
consensus_6442#2 ------------------------------------------------------------
consensus_6442#0 ------------------------------------------------------------
consensus_6442#1 CGGACGAGATGGTGATCGAGTACGTCGGGCAGATGGTGCGACCGTCGGTGGCGGATCTGC 300
consensus_6442#2 ------------------------------------------------------------
consensus_6442#0 ------------------------------------------------------------
consensus_6442#1 GCGAAACCAAGTACGAAGCGATCGGCATCGGCAGCTCCTACCTG-TTCCGGATCGACATG 359
consensus_6442#2 ------------------------------------------------------------
consensus_6442#0 ---GGGCAGAATCCCCCGACGGTAGCATCGGCAGCTCCTACCTGGTTCCGGATTGACATG 57
consensus_6442#1 GAAACGATCATCGATGCGACCAAGTGCGGCAACTTGG-CCCGATTCATTAACCATAGTTG 418
consensus_6442#2 ------------GAATCGCCCGAG---GTTCACTGG---CCGATTCATTAACCATAGTTG 42
consensus_6442#0 GAAACGATCATCGATGCGACCAAGTGCGGCAACTTGTGCCCGATTCATTAACCATAGTTG 117
** ** ** ** * *** * *********************
consensus_6442#1 CAAT-CCCAACTGTTACGCTAAAGTGATTACGAT-CGAGTCGGAGAAAAAGATCGT-CAT 475
consensus_6442#2 CAAT-CCCAACTGTTACGCTAAAGTGATTACGAT-CGAGTCGGAGAAAAAGATCGT-CAT 99
consensus_6442#0 CAATACCCAACTGTTACGCTAAAGTGATTACGATACGAGTCGGAGAAAAAGATCGTACAT 177
**** ***************************** ********************* ***
consensus_6442#1 -CTACTCGAAGCAACCGATCGGGGTGAAC-GAGGAGATTACGTACGACTACAAGTTCCC- 532
consensus_6442#2 -CTACTCGAAGCAACCGATCGGGGTGAAC-GAGGAGATTACGTACGACTACAAGTTCCC- 156
consensus_6442#0 ACTACTCGAAGCAACCGATCGGGGTGAACTGAGGAGATTACGTACGA-TACAAGTNCCCT 236
**************************** ***************** ******* ***
consensus_6442#1 GCTCGAG-GACGAAAAGATCCCT-TGCT-TGTGCGGTGC-GCCCGGTTG--CCGC-GGTA 585
consensus_6442#2 GCTCGAG-GACGAAAAGATCCCT-TGCT-TGTGCGGTGC-GCCCGGTTG--CCGC-GGTA 209
consensus_6442#0 GCTCGAGTGACGAAAAGATCCCTATGCTATGTGCGGTGCTGCCCGGTNTGCCTGCTGGTA 296
******* *************** **** ********** ******* * ** ****
consensus_6442#1 CACTCAACTAAACCCACACACGCTTCAAAC-GATCG--TGC-GCAAC-GCC--------G 632
consensus_6442#2 CACTCAACTAAACCCACACACGCTTCAAAC-GATCG--TGC-GCAAC-GCC--------G 256
consensus_6442#0 CACTCAACTAAAACCACACACGCTTCAAACTGATCNGTTGCTGCAACTGCCCCGAGCATA 356
************ ***************** **** *** ***** ***
consensus_6442#1 GATGTGTCTGCCCC---GGCATCGGGAGGAGAG-AGCAGTAGC-GGCAATACTGCCCATT 687
consensus_6442#2 GATGTGTCTGCCCC---GGCATCGGGAGGAGAG-AGCAGTAGC-GGCAATACTGCCCATT 311
consensus_6442#0 GTTGTCTNTGGCCCTGGGNCATCNGGCGCAGTGCAGCAGCAGCCAGTAAGCTGGCGCAAT 416
* *** * ** *** * **** ** * ** * ***** *** * ** ** ** *
consensus_6442#1 GCCCA--ATTTATGT--ACATTTTTGTAGCTGTATATATA----CATATATTTACGTTT- 738
consensus_6442#2 GCCCA--ATTTATGT--ACATTTTTGTAGCTGTATATATA----CATATATTTACGTTT- 362
consensus_6442#0 AACTNGGACCCATATTGGCCCCACAATANCTATAGTCACAATATTNTACNGTCAGACTTA 476
* * ** * * ** ** ** * * ** * * **
consensus_6442#1 -TCATTAGGCGCAAATGCTCNACAGATCAAAACACTGGTCCCGTATCTGTGCGGNGGAAC 797
consensus_6442#2 -TCATTAGGCGCAAATGCTCAACAGATCAAAACACTGGTCCCGTATCTGTGCGGCGGAAC 421
consensus_6442#0 GTAATTCAATNCTAACACTAAATAATATAAAAAAACCGTAAAAGACCAATAANACAAATG 536
* *** * ** ** * * **** * ** * * * *
consensus_6442#1 CGTCTGCATCTGCACATTA------------GTTTACCGCT------------------- 826
consensus_6442#2 CGTCTGCATCTGCACATTA------------GTTTACCGCTACACAGCTAGCCAGCCCGC 469
consensus_6442#0 CCGCCAAANATANAGGCTACAAAAACAAAGGAANTACNAACACCACAACAACCCTAGGGT 596
* * * * * ** ***
consensus_6442#1 ------------------------------------------------------------
consensus_6442#2 CAGCCAGCCAGTCAGTCATCAGTCCCTCACA---CCCACTCACACAAGAGACAGAACATT 526
consensus_6442#0 ACNCCACCCGGCNCAATACTAGTCNAGAACNAAGCACACGCGAACAACNCGCACACCTNT 656
consensus_6442#1 ------------------------------------------------------------
consensus_6442#2 GAGACCGTTAT-TGTTCGCTTTCCGTCATACGTTAGACACACTCGGGTGTCGGTCGTGTC 585
consensus_6442#0 GGGACAATNACCTANAGGCAAANCACTACACAAGGNNNNNAACACGGCATNAAGAACANC 716
consensus_6442#1 ------------------------------------------------------------
consensus_6442#2 GTAATGCAAGAACACACTACAAAAAATACCAACAGGAAAGTGAATGTGAACTCTTTTTTT 645
consensus_6442#0 ---AGGGATTANNGCCCCCAANGACACCCGNGCCCNGGCCGCCANAGCGACCCCAAGCAC 773
consensus_6442#1 ------------------------------------------------------------
consensus_6442#2 GTAGCTAGTTTTACCTGTTGCGTTCCGTTCTATTCCCCTCCCTCCTCGTTGAA-TGTGTT 704
consensus_6442#0 CAAGATNCNAGTNCCNANAGAGCTNCNGCCCACTACCANNACAACCCGCCAAAACGCATN 833
consensus_6442#1 ------------------------------------------------------------
consensus_6442#2 TTTTACA-ACGTTTCCTAGTTTGTTTT--CGAAATCATATGT-GCATTCAGGAA------ 754
consensus_6442#0 CNACACACACACCACCAANCGCACCNCACCCCCNCCACACNCCACATCTAGGCACCGCCA 893
consensus_6442#1 ------------------------------------------------------------
consensus_6442#2 ------------------------------------------------------------
consensus_6442#0 CCCCCGGNCTCACCCCTGGGNTCANCCGGCCCGCACGTCTCTCCCGGANCCCAAANTAAC 953
consensus_6442#1 ------------------------------------------------------------
consensus_6442#2 ------------------------------------------------------------
consensus_6442#0 NCGCNTTAAANCAACCACCCACACNNCCCGACCCNCCCACNCGCCANCCCCGCCCCCANC 1013
consensus_6442#1 -
consensus_6442#2 -
consensus_6442#0 C 1014
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||