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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1011 fasta sequence
[ATGACTGGTTTATGCGGTTGCCGCGAGATGGCGCGACCATACGTTGCCCCTTTTTTGTAATACTTCCGCCGTTGTTTCTATTGTTTCGTAACGATGTCGTCCGTACCTACCCTTTATATGCGTGTGTGCGTTGTTATAGTGCTGTCGTTTTTTAAAACGTGGACACACACAGCAAAAGAAAAACCGGTAAACCAATGTGTGCTTCAGGGTATTTTTTTATTAACTAGGTTGTTTTATAACTGTATTGTGTGACGGGATTAATTGTTGACGCATGATGCAAAGCAAGAAGAACTGGAGAATGGGATTTAAAACTAAAACAAAAACAGCAGGAATAGAGCAATGTGTTTTCAAGTCCGGTTTTGTTACAGGGGTTTTCCTAAGGAAAGTCCGTTAGGTTGCGGGCAGGGCAGGAGGGATAGAACCATCCGAAACCCGCTAATGATAAAAAGATCGAGAGATTACAGGAAAAATCAAGGAGCAAATGATAACACAATTTAAATTATGCCAGCAAAGTGAATGAGACAAAATGTTGTTATTTATTCAATATAAAACCGTACTCTCATCCTAGTACAGTAAGTACTCACTCTCTGCATAGTATGTGTGTATGTGTGCATAGGCTAGAGTGACCGAGTGCGGTGAATGTAAAACAACACTGCAGAAACAACAATCCTACCCTTTTGAATGTCTGAATGTTTCCACAATGTCATTGTTGTCTTAGGGGAGTAATGAGAAAACAAAAAATACCAGAAAACACCATTCGTGTAACAGTAGACGGGAGTAGATTGTAGCCAGCAGCGGCACACGGTGTAGTGAATGAT--AACATCAAAACTTGATAACAACACAACACTACCCATTGACAGTGAAACACAGAAACAAGCACACAGAACACAAAACACACACTGCACCGAGTAAAAGGAAATACAAGAATCTCCCTTATAAAAAAAAAAGAAAAATAATAATTGATCCGTATTTCAGTTGTTTCGATGTTTGTAATACGAAAATTGTACTTCA]
[+] EMBL BX612943 [ATGACTGGTTTATGCGGTTGCCGCGAGATGGCGCGACCATACGTTGCCCCTTTTTTGTAATACTTCCGCCGTTGTTTCTATTGTTTCGTAACGATGTCGTCCGTACCTACCCTTTATATGCGTGTGTGCGTTGTTATAGTGCTGTCGTTTTTTAAAACGTGGACACACACAGCAAAAGAAAAACCGGTAAACCAATGTGTGCTTCAGGGTATTTTTTTATTAACTAGGTTGTTTTATAACTGTATTGTGTGACGGGATTAATTGTTGACGCATGATGCAAAGCAAGAAGAACTGGAGAATGGGATTTAAAACTAAAACAAAAACAGCAGGAATAGAGCAATGTGTTTTCAAGTCCGGTTTTGTTACAGGGGTTTTCCTAAGGAAAGTCCGTTAGGTTGCGGGCAGGGCAGGAGGGATAGAACCATCCGAAACCCGCTAATGATAAAAAGATCGAGAGATTACAGGAAAAATCAAGGAGCAAATGATAACACAATTTAAATTATGCCAGCAAAGTGAATGAGACAAAATGTTGTTATTTATTCAATATAAAACCGTACTCTCATCCTAGTACAGTAAGTACTCACTCTCTGCATAGTATGTGTGTATGTGTGCATAGGCTAGAGTGACCGAGTGCGGTGAATGTAAAACAACACTGCAGAAACAACAATCCTACCCTTTTGAATGTCTGAATGTTTCCACAATGTCATTGTTGTCTTAGGGG ]
[+] EMBL BX613542 [ AACAAAAACAGCAGGAATAGAGCAATGTGTTTTCAAGTCCGGTTTTGTTACAGGGGTTTTCCTAAGGAAAGTCCGTTAGGTTGCGGGCAGGGCAGGAGGGATAGAACCATCCGAAACCCGCTAATGATAAAAAGATCGAGAGATTACAGGAAAAATCAAGGAGCAAATGATAACACAATTTAAATTATGCCAGCAAAGTGAATGAGACAAAATGTTGTTATTTATCCAATATAAAACCGTACTCTCATCCTAGTACAGTAAGTACTCACTCTCTGCATAGTATGTGTGTATGTGTGCATAGGCTAGAGTGACCGAGTGCGGTGAATGTAAAACAACACTGCAGAAACAACAATCCTACCCTTTTGAATGTCTGAATGTTTCCACAATGTCATTGTTGTCTTAGGGGAGTAATGAGAAAACAAAAAATACCAGAAAACACCATTCGTGTAACAGTAGACGGGAGTAGATTGTAGCCAGCAGCGGCACACGGTGTAGTGAATGATAAAACATCAAAACTTGATAACAACACAACACTACCCATTGACAGTGAAACACAGAAACAAGCACACAGAACACAAAACACACACTGCACCGAGTAAAAGGAAATACAAGAATCTCCCTTATAAAAAAAAAAGAAAAATAATAATTGATCCGTATTTCAGTTGTTTCGAT ]
[+] EMBL BX618292 [ GGTTTTCCTAAGGAAAGTCCGTTAGGTTGCGGGCAGGGCAGGAGGGATAGAACCATCCGAAACCCGCTAATGATAAAAAGATCGAGAGATTACAGGAAAAATCAAGGAGCAAATGATAACACAATTTAAATTATGCCAGCAAAGTGAATGAGACAAAATGTTGTTATTTATTCAATATAAAACCGTACTCTCATCCTAGTACAGTAAGTACTCACTCTCTGCATAGTATGTGTGTATGTGTGCATAGGCTAGAGTGACCGAGTGCGGTGAATGTAAAACAACACTGCAGAAACAACAATCCTACCCTTTTGAATGTCTGAATGTTTCCACAATGTCATTGTTGTCTTAGGGGAGTAATGAGAAAACAAAAAATACCAGAAAACACCATTCGCGTAACAGTAGACGGGAGTAGAATGTAGCCAGCAGCGGCACACGGTGTAGTGAATGAT AACATCAAAACTTGATAACAACACAACACTACCCATTGACAGTGAAACACAGAAACAAGCACACAGAACACAAAACACACACTGCACCGAGTAAAAGGAAATACAAGAA ]
[+] EMBL BM620863 [ ATCAAGGAGCAAATGATAACACAATTTAAATTATGCCAGCAAAGTGAATGAGACAAAATGTTGTTATTTATTCAATATAAAACCGTACTCTCATCCTAGTACAGTAAGTACTCACTCTCTGCATAGTATGTGTGTATGTGTGCATAGGCTAGAGTGACCGAGTGCGGTGAATGTAAAACAACACTGCAGAAACAACAATCCTACCCTTTTGAATGTCTGAATGTTTCCACAATGTCATTGTTGTCTTAAGTGAGTAATGAGAAAACAAAAAATACCAGAAAACACCATTCGTGTCACAGTAGACGGGAGTAGATTGTAGCCAGCAGCGGCACACGGTGTAGTGAATGATAAAACATCAAAACTTGATAACAACACAACACTACCCATTGACAGTGAAACACAGAAACAAGCACACAGAACACAAAACACACACTGCACCGAGTAAAAGGAAATACAAGAACCTCCCTTATCAAAAAAAAAGAATAATAATAATTGATCCGTATTTCAGTTGTTTCGATGTTTGTAATACGAAAATTGTACTTCA]
consensusID : consensus_6454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[GAATCCCCGAGGTTATCTATTGTTTCGTAACGATGTCGTCGTACCTACCCTTTATATGCGTGTGTGCGTTGTTATAGTGCTGTCGTTTTTTAAAACGTGGACACACACAGCAAAAGAAAAACCGGTAAACCAATGTGTGCTTCAGGTTATTTTTTATTAACTAGGTTGTTTATAACTGTATTGTGTGACGGGATTAATTGTTGACGCATGATGCAAGCAAGAAGAACTGGAAATGGGATTTAAAATAAAACAAAACAGAGGAATAGATCAATGTGTTTCAAAGTTCCCGGGTTTTTGTTTACCAGGGGGGTTTTTCCCTTAAAGGGAAAAGGTTCCCGGTTTAAGGGTTTGGCGGGGCCAGGGGCCAGGGAGGGGGATTAGAAACCCATTCCCGAAAACCCGTAAATATAAACACACGATTCGAGAAGATTTACCAGGGAACAAAATCAAGGGAGGCAACATGGATAACACAATTTTAAATTTATTGCCAGCACAAAGNTGAAATGAGGACAANAAATGGTTGTCTATTTATTCAATATAAAAACCGTACTTCTCATTCCCTAGTAACAGTCAGAGTACTTCACCTCTCTGCANTAGGTATGTGTTGTATTGTAGTTGCATATGGCTAGAGTGACCGAGTTGCGGGTGNATGTAAAAACCAACACTGCAGAAAACAAACAATCCTACCCTTTTGAA]
[+] EMBL AL692171 [GAATCCCCGAGGTTATCTATTGTTTCGTAACGATGTCGTCGTACCTACCCTTTATATGCGTGTGTGCGTTGTTATAGTGCTGTCGTTTTTTAAAACGTGGACACACACAGCAAAAGAAAAACCGGTAAACCAATGTGTGCTTCAGGTTATTTTTTATTAACTAGGTTGTTTATAACTGTATTGTGTGACGGGATTAATTGTTGACGCATGATGCAAGCAAGAAGAACTGGAAATGGGATTTAAAATAAAACAAAACAGAGGAATAGATCAATGTGTTTCAAAGTTCCCGGGTTTTTGTTTACCAGGGGGGTTTTTCCCTTAAAGGGAAAAGGTTCCCGGTTTAAGGGTTTGGCGGGGCCAGGGGCCAGGGAGGGGGATTAGAAACCCATTCCCGAAAACCCGTAAATATAAACACACGATTCGAGAAGATTTACCAGGGAACAAAATCAAGGGAGGCAACATGGATAACACAATTTTAAATTTATTGCCAGCACAAAGNTGAAATGAGGACAANAAATGGTTGTCTATTTATTCAATATAAAAACCGTACTTCTCATTCCCTAGTAACAGTCAGAGTACTTCACCTCTCTGCANTAGGTATGTGTTGTATTGTAGTTGCATATGGCTAGAGTGACCGAGTTGCGGGTGNATGTAAAAACCAACACTGCAGAAAACAAACAATCCTACCCTTTTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6454#0 ATGACTGGTTTATGCGGTTGCCGCGAGATGGCGCGACCATACGTTGCCCCTTTTTTGTAA 60
consensus_6454#1 -----------------------------------------------------------G 1
consensus_6454#0 TACTTCCGCCGTTGTTTCTATTGTTTCGTAACGATGTCGTCCGTACCTACCCTTTATATG 120
consensus_6454#1 AATCCCCGAGGTTA--TCTATTGTTTCGTAACGATGTCGTC-GTACCTACCCTTTATATG 58
* *** *** ************************* ******************
consensus_6454#0 CGTGTGTGCGTTGTTATAGTGCTGTCGTTTTTTAAAACGTGGACACACACAGCAAAAGAA 180
consensus_6454#1 CGTGTGTGCGTTGTTATAGTGCTGTCGTTTTTTAAAACGTGGACACACACAGCAAAAGAA 118
************************************************************
consensus_6454#0 AAACCGGTAAACCAATGTGTGCTTCAGGGTATTTTTTTATTAACTAGGTTGTTTTATAAC 240
consensus_6454#1 AAACCGGTAAACCAATGTGTGCTTCAGGTTATTTTTT-ATTAACTAGGTTGTTT-ATAAC 176
**************************** ******** **************** *****
consensus_6454#0 TGTATTGTGTGACGGGATTAATTGTTGACGCATGATGCAAAGCAAGAAGAACTGGAGAAT 300
consensus_6454#1 TGTATTGTGTGACGGGATTAATTGTTGACGCATGATGCAA-GCAAGAAGAACTGGA-AAT 234
**************************************** *************** ***
consensus_6454#0 GGGATTTAAAACTAAAACAAAAACAGCAGGAATAGAGCAATGTGTTTTCAAGTCC----G 356
consensus_6454#1 GGGATTTAAAA-TAAAACAAAA-CAG-AGGAATAGATCAATGTGTTTCAAAGTTCCCGGG 291
*********** ********** *** ********* ********** **** * *
consensus_6454#0 GTTTTGTT----ACAGGGGTTTTCCT----AAGGAAAG-------------------TCC 389
consensus_6454#1 TTTTTGTTTACCAGGGGGGTTTTTCCCTTAAAGGGAAAAGGTTCCCGGTTTAAGGGTTTG 351
******* * ******** * **** ** *
consensus_6454#0 GTTAGGTTGCGGGCAGGGCAGGAGGGATAGAA--CCAT--CCGAAACCCGCTAATGATAA 445
consensus_6454#1 GCGGGGCCAGGGGCCAGGGAGGGGGATTAGAAACCCATTCCCGAAAACCCGTAAATATAA 411
* ** **** ** *** ** ***** **** ****** ** *** ****
consensus_6454#0 AAAGA----TCGAGAGA--TTACAGGA----AAAATCAAGGA--GCAA-ATG-ATAACAC 491
consensus_6454#1 ACACACGATTCGAGAAGATTTACCAGGGAACAAAATCAAGGGAGGCAACATGGATAACAC 471
* * * ****** **** * ********** **** *** *******
consensus_6454#0 AATTTAAA--TTAT-GCCAGCA--AAGT--GAATGAG----ACAAAATGTTGT-TATTTA 539
consensus_6454#1 AATTTTAAATTTATTGCCAGCACAAAGNTGAAATGAGGACAANAAATGGTTGTCTATTTA 531
***** ** **** ******* *** ****** * *** ***** ******
consensus_6454#0 TTCAATATAAAA-CCGTACT-CTCAT--CCTAGTA-CAGT--AAGTACTCA--CTCTCTG 590
consensus_6454#1 TTCAATATAAAAACCGTACTTCTCATTCCCTAGTAACAGTCAGAGTACTTCACCTCTCTG 591
************ ******* ***** ******* **** ****** *******
consensus_6454#0 CAT--AGTATGTGT-GTAT-GTG--TGCATA-GGCTAGAGTGACCGAGT-GCGG-TGAAT 641
consensus_6454#1 CANTAGGTATGTGTTGTATTGTAGTTGCATATGGCTAGAGTGACCGAGTTGCGGGTGNAT 651
** ******** **** ** ****** ***************** **** ** **
consensus_6454#0 GTAAAA--CAACACTGCAGAAAC--AACAATCCTACCCTTTTGAATGTCTGAATGTTTCC 697
consensus_6454#1 GTAAAAACCAACACTGCAGAAAACAAACAATCCTACCCTTTTGAA--------------- 696
****** ************** ********************
consensus_6454#0 ACAATGTCATTGTTGTCTTAGGGGAGTAATGAGAAAACAAAAAATACCAGAAAACACCAT 757
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 TCGTGTAACAGTAGACGGGAGTAGATTGTAGCCAGCAGCGGCACACGGTGTAGTGAATGA 817
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 TAACATCAAAACTTGATAACAACACAACACTACCCATTGACAGTGAAACACAGAAACAAG 877
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 CACACAGAACACAAAACACACACTGCACCGAGTAAAAGGAAATACAAGAATCTCCCTTAT 937
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 AAAAAAAAAAGAAAAATAATAATTGATCCGTATTTCAGTTGTTTCGATGTTTGTAATACG 997
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 AAAATTGTACTTCA 1011
consensus_6454#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||