cluster # 6458

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Anopheles gambiae
cluster # 6458 cluster # 6458 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6458#0 length = 781 sequences # 2

consensus_6458#1 length = 722 sequences # 3

consensusID : consensus_6458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 781
fasta sequence

                              [CCGCGTTTATGATCTGTAATAAACAGTGGGTTTAGCATCAAACCTTAGCGATGGAGCAAATTGAACAACCAACGAGCGTCTCGGCTGGTACGGTGGAGATAATGCTCAAAAATGCTTCCACACCGGAACAGGTGGCGAAAAATGAAGGTTTAAACTGTAAAGCAGACACAGCGGAGTACTGTGACAATGTGAAAGAAACGAACGTGCGACAAAAGCGTAAGAAAGCGTCAGAAAAGATTGATGCGAGCGGTGTTACCGATGTCAAGCCTACGTTGGATCATCGATCGGCGGGCAAGGAACCGATCGTATCTTCCCATCCCGCCCCATCCTCGGAAGCGATGGGAAATCTTTCCAAAGCAAACGGAAAACGGCTAAAGCTGGATCTGAAAACCCATCCGGAACAACACCACAAGCCGGAACCAACGTCACCGCTAGGGCTGTTGCATGAGGAAAAAGTGATCGTCCGAAGCAAACCACCGATTCCACCGAAACCGGATATAAGGACGATCCCGGCACCGCCCCAAGGGCAACAGCGAGTGTCCATTTCGCCGACCGGCACACCTCAAGCAAAGGGCTGCAAGAAGCAGCAGGTGACAGAAGCGCACAATGCCCATACCGTCCAGAAGCTGCTGGCACAGAACGAACAGATGAGGCTGGAACTGAGCGAACTCCGAACGAGCTTAGCTGCGGAGCGGAATGCTGTCAGAGTGTTAAGGGCCCAAAACGAGTCCGATCTGCGAAAGACAAAATCCGAATGCAAGAAACTGCAGGAAGCTCTGCA]

[+] EMBL BM657382             [CCGCGTTTATGATCTGTAATAAACAGTGGGTTTAGCATCAAACCTTAGCGATGGAGCAAATTGAACAACCAACGAGCGTCTCGGCTGGTACGGTGGAGATAATGCTCAAAAATGCTTCCACACCGGAACAGGTGGCGAAAAATGAAGGTTTAAACTGTAAAGCAGACACAGCGGAGTACTGTGACAATGTGAAAGAAACGAACGTGCGACAAAAGCGTAAGAAAGCGTCAGAAAAGATTGATGCGAGCGGTGTTACCGATGTCAAGCCTACGTTGGATCATCGATCGGCGGGCAAGGAACCGATCGTATCTTCCCATCCCGCCCCATCCTCGGAAGCGATGGGAAATCTTTCCAAAGCAAACGGAAAACGGCTAAAGCTGGATCTGAAAACCCATCCGGAACAACACCACAAGCCGGAACCAACGTCACCGCTAGGGCTGTTGCATGAGGAAAAAGTGATCGTCCGAAGCAAACCACCGATTCCACCGAAACCGGATATAAGGACGATCCCGGCACCGCCCCAAGGGCAACAGCGAGTGTCCATTTCGCCGACCGGCACACCTCAAGCAAAGGGCTGCAAGAAGCAGCAGGTGACAGAAGCGCACAATGCCCATACCG                                                                                                                                                                   ]
[+] EMBL BM639380             [                                                                                                                                      cCGAAAAATGAAGGTTTAAACTGTAAAGCAGACACAGCGGAGTACTGTGACAATGTGAAAGAAACGAACGTGCGACAAAAGCGTAAGAAAGCGTCAGAAAAGATTGATGCGAGCGGTGTTACCGATGTCAAGCCTACGTTGGATCATCGATCGGCGGGCAAGGAACCGATCGTATCTTCCCATCCCGCCCCATCCTCGGAAGCGATGGGAAATCTTTCCAAAGCAAACGGAAAACGGCTAAAGCTGGATCTGAAAACCCATCCGGAACAACACCACAAGCCGGAACCAACGTCACCGCTAGGGCTGTTGCATGAGGAAAAAGTGATCGTCCGAAGCAAACCACCGATTCCACCGAAACCGGATATAAGGACGATCCCGGCACCGCCCCAAGGGCAACAGCGAGTGTCCATTTCGCCGACCGGCACACCTCAAGCAAAGGGCTGCAAGAAGCAGCAGGTGACAGAAGCGCACAATGCCCATACCGTCCAGAAGCTGCTGGCACAGAACGAACAGATGAGGCTGGAACTGAGCGAACTCCGAACGAGCTTAGCTGCGGAGCGGAATGCTGTCAGAGTGTTAAGGGCCCAAAACGAGTCCGATCTGCGAAAGACAAAATCCGAATGCAAGAAACTGCAGGAAGCTCTGCA]




>consensus_6458#0
CCGCGTTTATGATCTGTAATAAACAGTGGGTTTAGCATCAAACCTTAGCGATGGAGCAAA
TTGAACAACCAACGAGCGTCTCGGCTGGTACGGTGGAGATAATGCTCAAAAATGCTTCCA
CACCGGAACAGGTGGCGAAAAATGAAGGTTTAAACTGTAAAGCAGACACAGCGGAGTACT
GTGACAATGTGAAAGAAACGAACGTGCGACAAAAGCGTAAGAAAGCGTCAGAAAAGATTG
ATGCGAGCGGTGTTACCGATGTCAAGCCTACGTTGGATCATCGATCGGCGGGCAAGGAAC
CGATCGTATCTTCCCATCCCGCCCCATCCTCGGAAGCGATGGGAAATCTTTCCAAAGCAA
ACGGAAAACGGCTAAAGCTGGATCTGAAAACCCATCCGGAACAACACCACAAGCCGGAAC
CAACGTCACCGCTAGGGCTGTTGCATGAGGAAAAAGTGATCGTCCGAAGCAAACCACCGA
TTCCACCGAAACCGGATATAAGGACGATCCCGGCACCGCCCCAAGGGCAACAGCGAGTGT
CCATTTCGCCGACCGGCACACCTCAAGCAAAGGGCTGCAAGAAGCAGCAGGTGACAGAAG
CGCACAATGCCCATACCGTCCAGAAGCTGCTGGCACAGAACGAACAGATGAGGCTGGAAC
TGAGCGAACTCCGAACGAGCTTAGCTGCGGAGCGGAATGCTGTCAGAGTGTTAAGGGCCC
AAAACGAGTCCGATCTGCGAAAGACAAAATCCGAATGCAAGAAACTGCAGGAAGCTCTGC
A

consensusID : consensus_6458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 722
fasta sequence

                              [AGCACGCAATCGACCAAAGGTGGGCAAACCCAAA-ATAAAAAAAAAAAAAACCCA-ACCCAACGGTGCAAAGAACCTAAAGCGTAAAATCGCAACCGTGCGTGCGTGCGTGCGTGCGTGCGTGAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAATCCGTACCACCCGGGCCCTGCGATTGCGAGCAAACGTGCGAACGCATTGGATCTGTTCTGGTGACCGATTGTGAAGTGTAAATAGGTTACTTCCAACCACACCCAGCACAGCCGGTGGACGGAGGT-AAAAAATTGGATCGATTTGTCCACGACACAACGCCCCAAAAGTCCAACACCCTCGGTACGACACACTGAGCTCTATAGAAAAAAAAAAACAACAATAAGGGCAAGTCATCATCCATCCTGTTGGAACGGTGCGAAATTAAAGGTACAAAGCCCACCGGTGCATATGAATCGTGTGCCGAACATTGAATTTATCCGCCACTAGAGAGTGAGAGAGACAAGAAACAAGAGTGAAGCCCAGTGCGAGGAAGTTAGTGTTAAAATTAAAATTTAAATGTACTGCCTACGTGAAGAGTCTCAGCATACGTATCAGCAGCAAAAGCAGCAGCAACACCAGGACGTTTATGATCTGTAATAAGCAGTGGGTTTAGCATAAAACCTTAGCGATGGAGAACATAGAACAAACAACAAGCGTCTCGGCTGGTACGGTGGAGACA]

[-] EMBL BM643404             [AGCACGCAATCGACCAAAGGTGGGCAAACCCAAA ATAAAAAAAAAAAAAACCCA ACCCAACGGTGCAAAGAACCTAAAGCGTAAAATCGCAAC        CGTGCGTGCGTGCGTGCGTGAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAATCCGTACCACCCGGGCCCTGCGATTGCGAGCAAACGTGCGAACGCATTGGATCTGTTCTGGTGACCGATTGTGAAGTGTAAATAGGTTACTTCCAACCACACCCAGCACAACCGGTGGACGGAGGTAAAAAAATTGGATCGATTTGTCCACGACACAACGCCCCAAAAGTCCAACACCCTCGGCACGACACACTGAG                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM633561             [                           ccgCAAACACAAAATAAAAAAAACCCCACACCCAACGGTGCAAAGAACCTAAAGCGTAAAATCGCAACCGTGCGTGCGTGCGTGCGTGCGTGCGTGAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAATCCGTACCACCCGGGCCCTGCGATTGCGAGCAAACGTGCGAACGCATTGGATCTGTTCTGGTGACCGATTGTGAAGTGTAAATAGGTTACTTCCAACCACACCCAGCACAGCCGGTGGACGGAGGT AAAAAATTGGATCGATTTGTCCACGACACAACGCCCCAAAAGTCCAACACCCTCGGTACGACACACTGAGCTCTATAG                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM646246             [                                                        ccgCAACGGTGCAAAGAACCTAAAGCGTAAAATCGCAACCGTGCGTGCGTGCGTGCGTGCGTGCGTGAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAATCCGTACCACCCGGGCCCTGCGATTGCGAGCAAACGTGCGAACGCATTGGATCTGTTCTGGTGACCGATTGTGAAGTGTAAATAGGTTACTTCCAACCACACCCAGCACAGCCGGTGGACGGAGGT AAAAAATTGGATCGATTTGTCCACGACACAACGCCCCAAAAGTCCAACACCCTCGGTACGACACACTGAGCTCTATAGAAAAAAAAAAACAACAATAAGGGCAAGTCATCATCCATCCTGTTGGAACGGTGCGAAATTAAAGGTACAAAGCCCACCGGTGCATATGAATCGTGTGCCGAACATTGAATTTATCCGCCACTAGAGAGTGAGAGAGACAAGAAACAAGAGTGAAGCCCAGTGCGAGGAAGTTAGTGTTAAAATTAAAATTTAAATGTACTGCCTACGTGAAGAGTCTCAGCATACGTATCAGCAGCAAAAGCAGCAGCAACACCAGGACGTTTATGATCTGTAATAAGCAGTGGGTTTAGCATAAAACCTTAGCGATGGAGAACATAGAACAAACAACAAGCGTCTCGGCTGGTACGGTGGAGACA]




>consensus_6458#1
AGCACGCAATCGACCAAAGGTGGGCAAACCCAAAATAAAAAAAAAAAAAACCCAACCCAA
CGGTGCAAAGAACCTAAAGCGTAAAATCGCAACCGTGCGTGCGTGCGTGCGTGCGTGCGT
GAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAATCCGTACCACCCGGGCCC
TGCGATTGCGAGCAAACGTGCGAACGCATTGGATCTGTTCTGGTGACCGATTGTGAAGTG
TAAATAGGTTACTTCCAACCACACCCAGCACAGCCGGTGGACGGAGGTAAAAAATTGGAT
CGATTTGTCCACGACACAACGCCCCAAAAGTCCAACACCCTCGGTACGACACACTGAGCT
CTATAGAAAAAAAAAAACAACAATAAGGGCAAGTCATCATCCATCCTGTTGGAACGGTGC
GAAATTAAAGGTACAAAGCCCACCGGTGCATATGAATCGTGTGCCGAACATTGAATTTAT
CCGCCACTAGAGAGTGAGAGAGACAAGAAACAAGAGTGAAGCCCAGTGCGAGGAAGTTAG
TGTTAAAATTAAAATTTAAATGTACTGCCTACGTGAAGAGTCTCAGCATACGTATCAGCA
GCAAAAGCAGCAGCAACACCAGGACGTTTATGATCTGTAATAAGCAGTGGGTTTAGCATA
AAACCTTAGCGATGGAGAACATAGAACAAACAACAAGCGTCTCGGCTGGTACGGTGGAGA
CA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6458#0      CCGCGTTTATGATCTGTAATAAACAGTGGGTTTAGCATCAAACCTTAGCGATGGAGCAAA 60
consensus_6458#1      ----------AGCACGCAATCGACCAAAGGTG----GGCAAACCCAAA--ATAAAAAAAA 44
                                     * ***  **    ***       ******  *   **  *  ***

consensus_6458#0      TTGAACAACCAACGAGCGTCTCGGCTGGTACGGTGGAGATAATGCTCAAAAATGCTTCCA 120
consensus_6458#1      AAAAAACCCAACCCAACGGTGCAAAGAACCTAAAGCGTAAAAT-CGCAACCGTGCGTGCG 103
                         **   * * * * **   *            *   * *** * ***   *** * * 

consensus_6458#0      CACCGGAACAGGTG-GCGAAAAATGAAGGTTTAAACTGTA-AAGCAGACACAGCGGAGTA 178
consensus_6458#1      TGCGTGCGTGCGTGCGTGAAGTGTCGTCGTCGGTGGTGTTTAGGTAAAAATAATTGAAAT 163
                        *  *     *** * ***   *    **      ***  * * * * * *   **   

consensus_6458#0      CTGTGACAATGTGAAAGAAACGAACGTGCGACAAAAGCGTAAGAAAGCGTCAGAAAAGAT 238
consensus_6458#1      CCGT-ACCACCCGGGCCCTGCGATTGCGAGC---AAACGTGCGAACGCATTGGATCTG-T 218
                      * ** ** *   *       ***  * * *    ** ***  *** ** *  **   * *

consensus_6458#0      TGATGCGAGCGGT-GTTACCGATGTCAAGCCTACGTTGGATCATCGATCGGCG-GGCAAG 296
consensus_6458#1      TCTGGTGACCGATTGTGAAGTGTAAATAGGTTACTTCCAACCA-CACCCAGCACAGCCGG 277
                      *   * ** ** * ** *    *    **  *** *   * ** *   * **   **  *

consensus_6458#0      GAACCGATCGTATCTTCCCATCCCGCCCCATCCTCGGAAGCGATGGGAAATCTTTCCAAA 356
consensus_6458#1      TGGACGGAGGTAAAAAATTGGATCGATTTGTCCACG-ACACAACGCCCCAAAAGTCCAAC 336
                          **   ***           **     *** ** *  * * *    *    ***** 

consensus_6458#0      GCAAACGGAAAACGGCTAAAGCTGGATCTGAAAACCCATCCGGAACAACACCACAAGCCG 416
consensus_6458#1      ACCCTCGGTA--CGAC--ACACTGAGCTCTATAGAAAAAAAAAAACAACAATAAGGGC-- 390
                       *   *** *  ** *  *  ***      * *    *     *******  *   **  

consensus_6458#0      GAACCAACGTCACCGCTAGGGCTGTTGCA-TGAGGAAAAAGTGATCGTCCGAAGCAAACC 475
consensus_6458#1      ------AAGTCATCATCCATCCTGTTGGAACGGTGCGAAATTAAAGGTACAAAGC---CC 441
                            * **** *       ****** *  *  *  *** * *  ** * ****   **

consensus_6458#0      ACCGATTCCACCGAAAC-CGGATATAAGGACGATCCCGGCACCGCCCCAAGGGCAACAGC 534
consensus_6458#1      ACCGGTGCATATGAATCGTGTGCCGAACATTGAATTTATCCGCCACTAGAGAGTGAGAGA 501
                      **** * *    *** *  *     **    **      *  *  *   ** *  * ** 

consensus_6458#0      GAGTGTCCATTTCGCCGACCGGCACACCTCAAGCAAAGGGCTGCAAGAAGCAGCAGGTGA 594
consensus_6458#1      GACAAGAAACAAGAGTGA--AGCCCAGTGCGAGGAAGTTAGTGTTAAAATTAAAATTT-- 557
                      **      *       **   ** **   * ** **     **  * **  *  *  *  

consensus_6458#0      CAGAAGCGCACAATGCCCATACCGTCCAGAAGCT--GCTGGCACAGAACGAACAGATGAG 652
consensus_6458#1      ---AAATGTAC--TGCCTA---CGTGAAGAGTCTCAGCATACGTATCAGCAGCAAAAGCA 609
                         **  * **  **** *   ***  ***  **  **   *  *  *  * ** * *  

consensus_6458#0      GCTGGAACTGAGCGAACTCCGAACGAGCTTAGCTGCGGAGCGGAATGCTGTCAGAGTGTT 712
consensus_6458#1      GCAGCAAC--ACCAGGACGTTTATGATCTGTAATAAGCAGTGGGTTTAGCATAAAACCTT 667
                      ** * ***  * *         * ** **    *  * ** **  *      * *   **

consensus_6458#0      AAGGGCCCAAAACG-AGTCCGATCTGCGAAAGACAAAATCCGAATGCAAGAAACTGCAGG 771
consensus_6458#1      AGCGATGGAGAACATAGAACAAACAACAAGCGTCTCGGCTGGTACGGTGGAGACA----- 722
                      *  *    * ***  **  * * *  * *  * *       * * *   ** **      

consensus_6458#0      AAGCTCTGCA 781
consensus_6458#1      ----------