cluster # 6462

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Anopheles gambiae
cluster # 6462 cluster # 6462 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6462#0 length = 647 sequences # 2

consensus_6462#1 length = 575 sequences # 2
consensus_6462#2 length = 413 sequences # 1

consensusID : consensus_6462#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 647
fasta sequence

                              [GAGTACATCNTCCNCCGTTCTTCCGGCTGCTGAAGCAGCGGTGGGCCACCAACTTCGATTCGCTCGAGAAGTACTATCTGAAGATTCGGCTGCGCCACAACGAGACGGGCGAGTATGCGCAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTGCAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACTATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGAACATCGTGAATGATAAGGAATCGCGGTTCGAGACGNTCAAGTGCCGTCTGGCCGGGGCGGCCGCCCTGCAGGTGCAGTTTACCATCGTCGTCTTTGTGTCGCTGTTCNGGTGGATA]

[+] EMBL BX626308             [GAGTACATCNTCCNCCGTTCTTCCGGCTGCTGAAGCAGCGGTGGGCCACCAACTTCGATTCGCTCGAGAAGTACTATCTGAAGATTCGGCTGCGCCACAACGAGACGGGCGAGTATGCGCAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTGCAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACTATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGAACATCGTGAATGATAAGGAATCGCGGTTCGAGACGNTCAAGTGCCGTCTGGCCGGGGCGGCCGCCCTGCAGGTGCAGTTTACCATCGTCGTCTTTGTGTCGCTGTTCNGGTGGATA]
[-] EMBL AGA280627            [                                                                               GAAGATTCGGNTGCGCCACAACGAGACGGGCGAGTATGCGCAACGTTACGAGCACTTCCCGAACTTCTACCACGCGCCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTGCAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACTATGACGGGCAGCTGGTCGAGTCCGAGTTCGAGAACATCGTGAATGATAAGGAATCGCGGTTCGAGACGTTCAAGTGCCGT                                                                     ]




>consensus_6462#0
GAGTACATCNTCCNCCGTTCTTCCGGCTGCTGAAGCAGCGGTGGGCCACCAACTTCGATT
CGCTCGAGAAGTACTATCTGAAGATTCGGCTGCGCCACAACGAGACGGGCGAGTATGCGC
AACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGA
CGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGC
CGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTT
CAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATG
CATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCC
GCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTGCAAGGGTTCGAGTATCCGTACG
AGGATCTGATCACCTACTATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGAACATCGTGA
ATGATAAGGAATCGCGGTTCGAGACGNTCAAGTGCCGTCTGGCCGGGGCGGCCGCCCTGC
AGGTGCAGTTTACCATCGTCGTCTTTGTGTCGCTGTTCNGGTGGATA

consensusID : consensus_6462#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 575
fasta sequence

                              [GCCAGACNTCGGCACNTATGGCGCAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTG-CAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACT-ATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGAACATCGTGAATGAT-AAGGAATCGCGGTTCGAGACGTTCAAGTGCCGTCTG-GCCGGGGCGGCCGCCCTGC-AGGTGCAGTTTA-CCATCGTCG-TC-TTTGTG-TCGCTG-TTC-GGGTGGGATATTGCTGCGCCGGAATCTCCAGTG]

[+] EMBL BX468481             [GCCAGACNTCGGCACNTATGGCGCAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTG CAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACT ATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGAACATCGTGAATGAT AAGGAATCGCGGTTCGAGACGTTCAAGTGCCGTCTG GCCGGGGCGGCCGCCCTGC AGGTGCAGTTTA CCATCGTCG TC TTTGTG TCGCTG TTC GGGTGGGATATTGCTGCGCCGGAATCTCCAGTG]
[+] EMBL BX619917             [                              ACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTGCCAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACTNATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGANCCTCGTGAATGATNANGGAATCGCGGTTCGAGACTTNCANNTGCCGTCTGNNCCGGGGCNNCCGCCCTGCNGGGTCCGGTTTACCCTTCGTCGTTCTTTTGTGTTCNCTGTTTCGGGGTGGGA                         ]




>consensus_6462#1
GCCAGACNTCGGCACNTATGGCGCAACGGTACGAGCACTTCCCGAACTTCTACCACGCGG
CCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGA
AGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAG
AATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTC
CGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTT
CATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCC
TGCAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACTATGACGGGCAGCTGGTCG
AGGCCGAGTTCGAGAACATCGTGAATGATAAGGAATCGCGGTTCGAGACGTTCAAGTGCC
GTCTGGCCGGGGCGGCCGCCCTGCAGGTGCAGTTTACCATCGTCGTCTTTGTGTCGCTGT
TCGGGTGGGATATTGCTGCGCCGGAATCTCCAGTG

consensusID : consensus_6462#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [GCCCCGCGTCGCGCGCCCATCGGCTCAGCGCCAGAATCGGCACCAGGAGGGTAGTCGTTGCAGTTTCAATGAACATGCTCCAAGGCTGGATATCAACCAATGTCCGGACTGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCCGCGCGTACGAAACCGGGCGGCTATAAGGTGCGAGTGCCCTTGCAAAGGGGTTCGAGGTATCCCGTACGGAGGGATCTGAATTCACCGTACTATGGACGGGGCCAAGCTGGGTNCGCAGCGGCCCGCAGTTCCGGAGGAAACAATCCGGTNGGACATTGCACTANAGCGGAAACTCGCCCGGGGTATCGGAAGGACGGTTTTGCAAACGGTGGCCCGGTCTG]

[+] EMBL BX466449             [GCCCCGCGTCGCGCGCCCATCGGCTCAGCGCCAGAATCGGCACCAGGAGGGTAGTCGTTGCAGTTTCAATGAACATGCTCCAAGGCTGGATATCAACCAATGTCCGGACTGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCCGCGCGTACGAAACCGGGCGGCTATAAGGTGCGAGTGCCCTTGCAAAGGGGTTCGAGGTATCCCGTACGGAGGGATCTGAATTCACCGTACTATGGACGGGGCCAAGCTGGGTNCGCAGCGGCCCGCAGTTCCGGAGGAAACAATCCGGTNGGACATTGCACTANAGCGGAAACTCGCCCGGGGTATCGGAAGGACGGTTTTGCAAACGGTGGCCCGGTCTG]




>consensus_6462#2
GCCCCGCGTCGCGCGCCCATCGGCTCAGCGCCAGAATCGGCACCAGGAGGGTAGTCGTTG
CAGTTTCAATGAACATGCTCCAAGGCTGGATATCAACCAATGTCCGGACTGATTATTACG
AGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGA
TCCTGGGCCGCCGCGCGTACGAAACCGGGCGGCTATAAGGTGCGAGTGCCCTTGCAAAGG
GGTTCGAGGTATCCCGTACGGAGGGATCTGAATTCACCGTACTATGGACGGGGCCAAGCT
GGGTNCGCAGCGGCCCGCAGTTCCGGAGGAAACAATCCGGTNGGACATTGCACTANAGCG
GAAACTCGCCCGGGGTATCGGAAGGACGGTTTTGCAAACGGTGGCCCGGTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6462#0      GAGTACATCNTCCNCCGTTCTTCCGGCTGCTGAAGCAGCGGTGGGCCACCAACTTCGATT 60
consensus_6462#1      ------------------------------------------------------------
consensus_6462#2      ------------------------------------------------------------
                                                                                  

consensus_6462#0      CGCTCGAGAAGTACTATCTGAAGATTCGGCTGCGCCACAACGAGACGGGCGAGTATG-CG 119
consensus_6462#1      ---------------------------------GCCA----GACNTCGGCACNTATGGCG 23
consensus_6462#2      ------------------------------------------------------------
                                                                                  

consensus_6462#0      CAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGG 179
consensus_6462#1      CAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGG 83
consensus_6462#2      ------------------------------------------------------------
                                                                                  

consensus_6462#0      ACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTG 239
consensus_6462#1      ACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTG 143
consensus_6462#2      ----------------------------------------------------GCCCCGCG 8
                                                                           * * * *

consensus_6462#0      CCGTTCTTCGGCTGGGACAGC-CTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGT 298
consensus_6462#1      CCGTTCTTCGGCTGGGACAGC-CTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGT 202
consensus_6462#2      TCGCGCGCCCATCGGCTCAGCGCCAGAATCGGCACCAGGA----GGGTAGTCGTTGCAGT 64
                       **  *  *    **  **** *   *  **   * ** *     ** ************

consensus_6462#0      TTCAATGAACATGCTCCA--GCTGGATATCAACCAATGTCCGGA-TGATTATTACGAGCC 355
consensus_6462#1      TTCAATGAACATGCTCCA--GCTGGATATCAACCAATGTCCGGA-TGATTATTACGAGCC 259
consensus_6462#2      TTCAATGAACATGCTCCAAGGCTGGATATCAACCAATGTCCGGACTGATTATTACGAGCC 124
                      ******************  ************************ ***************

consensus_6462#0      GAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCT 415
consensus_6462#1      GAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCT 319
consensus_6462#2      GAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCT 184
                      ************************************************************

consensus_6462#0      GGGCCGCGG---GTACGAAAC-GGGCGGCTATAAG-TGCGAGTGCC--TGCAA--GGGTT 466
consensus_6462#1      GGGCCGCGG---GTACGAAAC-GGGCGGCTATAAG-TGCGAGTGCC--TGCAA--GGGTT 370
consensus_6462#2      GGGCCGCCGCGCGTACGAAACCGGGCGGCTATAAGGTGCGAGTGCCCTTGCAAAGGGGTT 244
                      ******* *   ********* ************* **********  *****  *****

consensus_6462#0      CGAG-TATCC-GTACGA--GGATCTGA--TCACC-TACTATGACGGGCAGCTGGTCGAGG 519
consensus_6462#1      CGAG-TATCC-GTACGA--GGATCTGA--TCACC-TACTATGACGGGCAGCTGGTCGAGG 423
consensus_6462#2      CGAGGTATCCCGTACGGAGGGATCTGAATTCACCGTACTATGGACGGGGCCAAGCTGGGT 304
                      **** ***** *****   ********  ***** *******   **   *  *  * * 

consensus_6462#0      CCGAGTTCGAGAACA-TCGTGAATGATAAGGAATCGCGGTTCGAGACGNTCAAGTGCCGT 578
consensus_6462#1      CCGAGTTCGAGAACA-TCGTGAATGATAAGGAATCGCGGTTCGAGACGTTCAAGTGCCGT 482
consensus_6462#2      NCGCAGCGGCCCGCAGTTCCGGAGGAAACAATCCGGTNGGACATTGCACTANAGCGGAAA 364
                       **     *    ** *   * * ** *       *  *  *    *  *  ** *    

consensus_6462#0      CTGGCCGGGGCGGCCGCCCTGCAGGTGCAGTTTACCATCGTCGTCTTTGTGTCGCTGTTC 638
consensus_6462#1      CTGGCCGGGGCGGCCGCCCTGCAGGTGCAGTTTACCATCGTCGTCTTTGTGTCGCTGTTC 542
consensus_6462#2      CTCGCCCGGGGTATCG----GAAGGACGGTTTTGCAAACGGTGGCCCGGTCTG------- 413
                      ** *** ***    **    * ***     *** * * **  * *   ** *        

consensus_6462#0      NGGTGG-ATA----------------------- 647
consensus_6462#1      GGGTGGGATATTGCTGCGCCGGAATCTCCAGTG 575
consensus_6462#2      ---------------------------------