cluster # 6468

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6468 cluster # 6468 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6468#0 length = 665 sequences # 4

consensus_6468#1 length = 424 sequences # 1

consensusID : consensus_6468#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 665
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGCGGTTTCCCTTCAGCAAAATGTGTGTTTTACGGCAAGTCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACTCCCAAACTCCAGCGCCCAACAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATCCCGAACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGAAGCTGGCCCATACATTGCAGTACAGCAG-CACAGTGCAGTGCATTCCGCTACTAACA-TCGGATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTCAGCAGGCTTACCCTTATTTGATGCGGGAGTTTATGCTGTGTGCTGGGGTTTAAGGAAAGTAAGGT]

[+] EMBL BM581238             [CCGCGGACGCGTGGGCGGACGCGTGGGTTCCCTTCAGCAAAATGTGTGTTTTACGGCAAGTCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACTCCCAAACTCCAGCGCCCAACAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATCCCGAACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGAAGCTGGCCCATACATTGCAGTACAGCAG CACAGTGCAGTGCATTCCGCTACTAACA TCGGATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTCAGCAGGCTTACCCTTATTTGATGCGGGAGTTT                                 ]
[+] EMBL BM629571             [                      cCGCTTTCCCTTCAGCAAAATGTGTGTTTTACGGCAAGTCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACTCCCAAACTCCAGCGCCCAACAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATCCCGAACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGAAGCTGGCCCATACATTGCAGTACAGCAG CACAGTGCAGTGCATTCCGCTACTAACA TCGGATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTCAGCAGGCTTACCCTTATTTGA                                            ]
[+] EMBL BM612496             [                       ccGTTTCCTTTCAGCAAAATGTGTGTTTTACGGCAAGTCGGCCTGCTGGTCGTGGTATTGGCAACAATTTCACTGCCAATCTCCAGCGCCCAGCAGCAGAAGGAGGAACAGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCATACCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCCTTCCGAACTTCTACGAAGTTGCAGTCGGTAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGAAGCTGGCCCATACATTGCAGTACAGCAGCCACAGTGCAGTGCATTCCGCTACTAACATTCGGATAGCAGTCTTATCCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTCAGCAGGCTTACCCTTATTTGATGCGGGAGTTTATGCTGTGTGCTGGGGTTTAAGGAAAGTAAGGT]
[+] EMBL BM628147             [                                  ccGCAAAATGTGTGTTTTACGGCAAGTCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACTCCCAAACTCCAGCGCCCAACAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATCCCGAACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGAAGCTGGCCCATACATTGCAGTACAGCAG CACAGTGCAGTGCATTCCGCTACTAACA TCGGATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTCAGCAGGCTTACCCTTATTTGATGCGGGAGT                                   ]




>consensus_6468#0
CCGCGGACGCGTGGGCGGACGCGCGGTTTCCCTTCAGCAAAATGTGTGTTTTACGGCAAG
TCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACTCCCAAACTCCAGCGCCCAACAGC
AGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACA
TTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAA
GCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATCCCGA
ACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGC
GGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAACTTCGATATAGCACTCGCGA
AGCTGGCCCATACATTGCAGTACAGCAGCACAGTGCAGTGCATTCCGCTACTAACATCGG
ATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATACAAAGGAAA
GGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGGACTACTGTC
AGCAGGCTTACCCTTATTTGATGCGGGAGTTTATGCTGTGTGCTGGGGTTTAAGGAAAGT
AAGGT

consensusID : consensus_6468#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [TGGTGTTGGCAGCATTTACATCTACCCAATNCTNCCAGCGCCCAGCAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCTTACCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCCTTCCGAACTTCTACGAAGTTGCAGTCGGTAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCAGGAGTTGTTTGTGCCTCTGGAAACANNGAGCGATCCGNAACTTCGGATATAGCACTTCGCCTAAGCTAGCCCATTACATTGCAAGTTACCAGCCACGCCACCAGTACCAGTGCATTCCCGNCTAACNTAAACAT]

[+] EMBL BX619377             [TGGTGTTGGCAGCATTTACATCTACCCAATNCTNCCAGCGCCCAGCAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTGCCTTACCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCCTTCCGAACTTCTACGAAGTTGCAGTCGGTAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCAGGAGTTGTTTGTGCCTCTGGAAACANNGAGCGATCCGNAACTTCGGATATAGCACTTCGCCTAAGCTAGCCCATTACATTGCAAGTTACCAGCCACGCCACCAGTACCAGTGCATTCCCGNCTAACNTAAACAT]




>consensus_6468#1
TGGTGTTGGCAGCATTTACATCTACCCAATNCTNCCAGCGCCCAGCAGCAGCAGGAGGAA
CGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTGGACATTGAACAAGTG
CCTTACCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGTGGAAGCATCATCGGA
CCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCCTTCCGAACTTCTACGAA
GTTGCAGTCGGTAGCACCAATCCATACGAGGGCCAAAGGATCTTGGTGCAGGAGTTGTTT
GTGCCTCTGGAAACANNGAGCGATCCGNAACTTCGGATATAGCACTTCGCCTAAGCTAGC
CCATTACATTGCAAGTTACCAGCCACGCCACCAGTACCAGTGCATTCCCGNCTAACNTAA
ACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6468#0      CCGCGGACGCGTGGGCGGACGCGCGGTTTCCCTTCAGCAAAATGTGTGTTTTACGGCAAG 60
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      TCGGCCTGCTGGCCGTGGTGTTGACAGCAGTTTCACT--CCCAAAC--TCCAGCGCCCAA 116
consensus_6468#1      ---------------TGGTGTTGGCAGCATTTACATCTACCCAATNCTNCCAGCGCCCAG 45
                                     ******** ***** ** **    *****     ********** 

consensus_6468#0      CAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTG 176
consensus_6468#1      CAGCAGCAGGAGGAACGGGATGATAGTGCGACCAACATGATAGTGGGAGGTATGAAGGTG 105
                      ************************************************************

consensus_6468#0      GACATTGAACAAGTGCCATATCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGT 236
consensus_6468#1      GACATTGAACAAGTGCCTTACCAGGCGGCTATCCTCACCTTGGGACAGGTGCATTGTGGT 165
                      ***************** ** ***************************************

consensus_6468#0      GGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCATC 296
consensus_6468#1      GGAAGCATCATCGGACCGCGCTGGGTTCTGACGGCGTACCACTGCGTCGACTGGCTCCTT 225
                      ********************************************************* * 

consensus_6468#0      CCGAACTTCTACGAAGTTGCAGTGGGAAGCACCAATCCATACGAGGGCCAAAGGATCTTG 356
consensus_6468#1      CCGAACTTCTACGAAGTTGCAGTCGGTAGCACCAATCCATACGAGGGCCAAAGGATCTTG 285
                      *********************** ** *********************************

consensus_6468#0      GTGCGGGAGTTGTTTGTGCCTCCGGAAACATTGAGCGATCCGAA-CTTCG-ATATAGCAC 414
consensus_6468#1      GTGCAGGAGTTGTTTGTGCCTCTGGAAACANNGAGCGATCCGNAACTTCGGATATAGCAC 345
                      **** ***************** *******  ********** * ***** *********

consensus_6468#0      TCG--CGAAGCTGGCCCAT-ACATTGCAGTACAGCAGCACAGTGCAGTGCATTCCGCTAC 471
consensus_6468#1      TTCGCCTAAGCTAGCCCATTACATTGCAAGTTACCAGC-----------CACGCCACCAG 394
                      *    * ***** ****** ********    * ****           **  ** * * 

consensus_6468#0      TAACATCGGATAGCAGTCTTATTCCCGATACTCCGGCGTATATCTCTGGCTTTGGTTATA 531
consensus_6468#1      TACCAGTGCATTCCCGNCTAACNTA-AACAT----------------------------- 424
                      ** **  * **  * * ** *      * *                              

consensus_6468#0      CAAAGGAAAGGGCCAGTGACAATATACTGAAGGCCGCTCAAATCAAGGTGCTTCCGTGGG 591
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      ACTACTGTCAGCAGGCTTACCCTTATTTGATGCGGGAGTTTATGCTGTGTGCTGGGGTTT 651
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      AAGGAAAGTAAGGT 665
consensus_6468#1      --------------