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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1287 fasta sequence
[CAGCCAGAATCGNGCACGAGGTNAACACACCAAATAAATTCCTTCGCTTTTTCTCGGTTTCATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATTGTTCCGATTTCAATGCTT-CGTAACACTGTGAAAGACTATATTCTTGAGAGCTGTCGTTTGATTCCATGAATATCCTTCGTATGACGGACTATCGAAACTAGTGGCACTACGGCAACCGCAAGTAGAGCATTCTCTTTGCAGTCCTGATTTCTACCACAACAAGGAAGTCCCAGNCCACACCAGTTGGAATCAGTTTGAAGTGTGGTGAAGAA----CCATCATGGACACTAGTTCGAGATCTGTGCAAAAGATAACTTTGGTAACACCCCGCCGAGTGTTGAAAACTACCAGTGACAAGGATCGAAGGCGCATAATATCAGCATTTGAAAAGGGTGTCTCGGCATCAGCCATCAGTAAAATTCTAAACATAAAGCAAGGCACGGTGTATGGAATCATAAAAAATTATAANGAACGTTTGCAGATTGATTCTAAGAAGCGCGGGGGACAAAACCCCAAATTGTTGACACCAGAAGCAATAGATAGTATACATCGCTGGGTAGACGAAAATGAGTCCGTCACGCTAAAGGTACTAACGGAGCGAGTGNTTTAAGGATCACGGTCTGCGCGTAAGCTCTACCACGGTAGCGCGGGAAGTCAGAGCGTACAAAAATCCGACAAAGATGCCAAAAATTCAGTACCGATGCGATCGATGCACCTTAAACCACCAAACCGAGGAATGTCCGTTTGACGATGAAGTAATTGAAGGCTTGAAATGTTCCACCTGCAATGAACCACATGGTGCAAATGATTCGCAGTGCCCTACGCGCAAAGACCCGTTCGCGACGAGTCCACTCCCAAGCGAGGAAATTGAGCATGAGGAAAGTTCGACACAATCTTTCCTGGACGCATTGTCACCGCTGAAAGCAGAACCGTCCTGGCCATCGTCCGCGACTCAAAGCCCTGCACGGGAAACTAGCATCGTGACTGCAACACCGTTAAGTTTTCAAAACGACGTTTCTCACATTATCATCGAAGAAGCGGACGCACTGTCTACTTCCACCGATGCAAATTCCCTGCACGATCCTGAAACGCTGTTGACCATTTTCAAAGAGATGAGCGCCAAACTCAGGGCCTGCCGTACTAAGGCGGATCAAATCCAAGTACTGGGAGAGATCATTATTCGTTACGGATAGGTTGAGTGATAGTGACCGGTTTGCAACGCTAAGCATGGGCAGTGCCAGGGCAA]
[+] EMBL BX469377 [CAGCCAGAATCGNGCACGAGGTNAACACACCAAATAAATTCCTTCGCTTTTTCTCGGTTTCATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATTGTTCCGATTTCAATGCTTGCGTAACACTGTGAAAGACTATATTCTTGAGAGCTGTCGTTTGATTCCATGAATATCCTTCGTATGACGGACTATCGAAACTAGTGGCACTACGGCAACCGCAAGTAGAGCATTCTCTTTGCAGTCCTGATTTCTACCACAACAAGGAAGTCCCAGNCCACACCAGTTGGAATCAGTTTGAAGTGTGGTGAAGAAGTAGCCATCATGGACACTAGTTCGAGATCTGTGCAAAAGATAACTTTGGTAACACCCCGCCGAGTGTTGAAAACTACCAGTGACAAGGATCGAAGGCGCATAATATCAGCATTTGAAAAGGGTGTCTCGGCATCAGCCATCAGTAAAATTCTAAACATAAAGCAAGGCACGGTGTATGGAATCATAAAAAATTATAANGAACGTTT ]
[+] EMBL BX627897 [ GGTTTCATAGTGTTTATTTTGCCTTTTGCAATAAATAATTAAGAATATTGTTCCTATTTCAATGCTT CGTAACACTGTGAAAGACTATATTCTTGAGAGCTGTCGTTTGATTCCATGAATATTCTTCGTATGACGGACTATCGAAACTAGTGGCACTACGGCAACCGCAAGTAGAGCATCCTCTTTGCAGTCCTGATTTCTACCACAACAAGGAAGTCCCAGTCCACACCAGTTGGAATCAGTTTGAAGTGTGGTGAAGAA CCATCATGGACACTAGTTCGAGATCTGTGCAAAAGATAACTTTGGTAACACCCCGCCGAGTGTTGAAAACTACCAGTGACAAGGATCGAAGGCGCATAATATCGGCCTTTGAAAAGGGTGTCTCGGCATCAGCCATCAGTAAAATTCTAAACATAAAGCAAGGCACGGTGTATGGAATCATAAAAAATTATAAGGAACGTTTGCAGATTGATTCTAAGAAGCGCGGGGGACAAAACCCCAAATTGTTGACACCAGAAGCAATAGATAGTATACATCGCTGGGTAGACGAAAATGAGTCCGTCACGCTAAAGGTACTAACGGAGCGAGTGNTTTAAGGATCACGGTCT ]
[+] EMBL BM578746 [ ccgGCTAAAGGTACTGACGGAGCGAGTG TTTAAGGATCACGGTCTGCGCGTAAGCTCTACCACGGTAGCGCGGGAAGTCAGAGCGTACAAAAATCCGACAAAGATGCCAAAAATTCAGTACCGATGCGATCGATGCACCTTAAACCACCAAACCGAGGAATGTCCGTTTGACGATGAAGTAATTGAAGGCTTGAAATGTTCCACCTGCAATGAACCACATGGTGCAAATGATTCGCAGTGCCCTACGCGCAAAGACCCGTTCGCGACGAGTCCACTCCCAAGCGAGGAAATTGAGCATGAGGAAAGTTCGACACAATCTTTCCTGGACGCATTGTCACCGCTGAAAGCAGAACCGTCCTGGCCATCGTCCGCGACTCAAAGCCCTGCACGGGAAACTAGCATCGTGACTGCAACACCGTTAAGTTTTCAAAACGACGTTTCTCACATTATCATCGAAGAAGCGGACGCACTGTCTACTTCCACCGATGCAAATTCCCTGCACGATCCTGAAACGCTGTTGACCATTTTCAAAGAGATGAGCGCCAAACTCAGGGCCTGCCGTACTAAGGCGGATCAAATCCAAGTACTGGGAGAGATCATTATTCGTTACGGATAGGTTGAGTGATAGTGACCGGTTTGCAACGCTAAGCATGGGCAGTGCCAGGGCAA]
consensusID : consensus_6475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[GCCGAGGTTTAGTGCCTACGCGCAAGACCGTTCGCGACGAGTCACTCCCAAGCGAGGAAATTGAGCATGAGGAAAGTTCGACACAATCTTCGCTGGACGCATTGTCACCGCGTGAAAGCTGAACCGTTCCTGGNCATCGTCCGCAACTCAAAGCCCTGGCACGGGAAACTAACATCTGTGACTTGGAAACCGTTAAGTTTTCAAAACGACGTTTCGTCACATATATCATTCCGAAGAAAGCTGGACNGCAACTTGTCTAACATTTCCACCCGATTGCGAAATTACCCTGCGAACGATCCTTTGAAAACGCTTGTGTTTGAGCCATATATTCAAACGAAGGATTGAAGCTGCCGAAAACTCAAGGGCGCTTGCCCGTTACCTAAAAGATGCGGGATTCAAAATTCCCAACGGTACTTTGGGGGAAGAAGATTCATATATTTCCGTTAACAGGAGCTTACGAGTTTTGACGTN]
[+] EMBL AL931908 [GCCGAGGTTTAGTGCCTACGCGCAAGACCGTTCGCGACGAGTCACTCCCAAGCGAGGAAATTGAGCATGAGGAAAGTTCGACACAATCTTCGCTGGACGCATTGTCACCGCGTGAAAGCTGAACCGTTCCTGGNCATCGTCCGCAACTCAAAGCCCTGGCACGGGAAACTAACATCTGTGACTTGGAAACCGTTAAGTTTTCAAAACGACGTTTCGTCACATATATCATTCCGAAGAAAGCTGGACNGCAACTTGTCTAACATTTCCACCCGATTGCGAAATTACCCTGCGAACGATCCTTTGAAAACGCTTGTGTTTGAGCCATATATTCAAACGAAGGATTGAAGCTGCCGAAAACTCAAGGGCGCTTGCCCGTTACCTAAAAGATGCGGGATTCAAAATTCCCAACGGTACTTTGGGGGAAGAAGATTCATATATTTCCGTTAACAGGAGCTTACGAGTTTTGACGTN]
consensusID : consensus_6475#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence
[GGCAGAATCGCCACGAGGTATCCTTCGTTTNTCTCGGGTTCCATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATTGTTCCGATCTTCAATGCTTCGTAACACTGTGGAAAGACTATATTCTTGAGAGCTGTCGTTCTGATTCCATGGAATATCCTTCGTATGACGGTATGTACATCGCTGCAGGACTATCGAAACTAGTGGCACTACGGCAACCGCAAGTAGAGCATCCTCTTTGCAGTCCTGATTTCTACCACTAACAAGGGAAGTCCCAGTCCACACGCAGGTTGGAATCACGTTTGAAGTGTGGTGAGATGAACCATCATGGACACGTAGTTTCAGACGATCTGTGCAAAACGATAACTTTGGTAACAACCCGGCGAGTGTNGAAAACTACCAGTGACAAGGATCGAAGGCGCATAATATCGGNCTTTGAAAAGGGTGTCTCG]
[+] EMBL AL929725 [GGCAGAATCGCCACGAGGTATCCTTCGTTTNTCTCGGGTTCCATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATTGTTCCGATCTTCAATGCTTCGTAACACTGTGGAAAGACTATATTCTTGAGAGCTGTCGTTCTGATTCCATGGAATATCCTTCGTATGACGGTATGTACATCGCTGCAGGACTATCGAAACTAGTGGCACTACGGCAACCGCAAGTAGAGCATCCTCTTTGCAGTCCTGATTTCTACCACTAACAAGGGAAGTCCCAGTCCACACGCAGGTTGGAATCACGTTTGAAGTGTGGTGAGATGAACCATCATGGACACGTAGTTTCAGACGATCTGTGCAAAACGATAACTTTGGTAACAACCCGGCGAGTGTNGAAAACTACCAGTGACAAGGATCGAAGGCGCATAATATCGGNCTTTGAAAAGGGTGTCTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6475#0 CAGCCAGAATCGNGCACGAGGTNAACACACCAAATAAATTCCTTCGCTTTTTCTCGGTTT 60
consensus_6475#2 -------------------GGCAGAATCGCCACGAGGTATCCTTCGTTTNTCTCGGGTTC 41
consensus_6475#1 -------------------------GCCGAGGTTTAGTG-CCTACGCGCAAGACCGTTCG 34
* *** ** * *
consensus_6475#0 CATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATT-GTTCCGAT-TTCAAT 118
consensus_6475#2 CATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATT-GTTCCGATCTTCAAT 100
consensus_6475#1 CGACGAGTCACTCCCAAGCGAGGAAATTGAGCATGAGGAAAGTTCGACACAATCTTCGCT 94
* * * * * *** ** * *** ** * * ** *** *
consensus_6475#0 G--CTTCGTAACACTGTG-AAAGACTATATTCTTGAGAGCTGTCGTT-------TGATTC 168
consensus_6475#2 G--CTTCGTAACACTGTGGAAAGACTATATTCTTGAGAGCTGTCGTTC------TGATTC 152
consensus_6475#1 GGACGCATTGTCACCGCGTGAAAGCTGAACCGTTCCTGGNCATCGTCCGCAACTCAAAGC 154
* * * *** * * ** ** * ** * **** * *
consensus_6475#0 CATG-AATATCCTTCGTATGACGG------------------ACTATCGAAACTA-GTGG 208
consensus_6475#2 CATGGAATATCCTTCGTATGACGGTATGTACATCGCTGCAGGACTATCGAAACTA-GTGG 211
consensus_6475#1 CCTGGCACGGGAAACTAACATCTGTGACTTGGAAACCGTTAAGTTTTCAAAACGACGTTT 214
* ** * * * * * * ** **** * **
consensus_6475#0 CACTACGGCAACCG---CAAGTAGAGCATTCTCTTTGCAGTCCTGATTTCTACCAC-AAC 264
consensus_6475#2 CACTACGGCAACCG---CAAGTAGAGCATCCTCTTTGCAGTCCTGATTTCTACCACTAAC 268
consensus_6475#1 CGTCACATATATCATTCCGAAGAAAGCTGGACNGCAACTTGTCTAACATTTCCACCCGAT 274
* ** * * * * * *** * ** * * * * * *
consensus_6475#0 AAGG-AAGTCCCAGNCCACACC--AGTTGGAATCA-GTTTGAAGTGTGGTGAA--GAACC 318
consensus_6475#2 AAGGGAAGTCCCAGTCCACACGCAGGTTGGAATCACGTTTGAAGTGTGGTGAGATGAACC 328
consensus_6475#1 TGCG-AAATTACCCTGCGAACGATCCTTTGAAA-ACGCTTGTGTTTGAGCCATATATTCA 332
* ** * * * ** ** *** * * *** * * * *
consensus_6475#0 ATCATGGACAC-TAGTTCGAGA---TCTGTGCAAAA-GATAACTTTGGTAACACCCCGCC 373
consensus_6475#2 ATCATGGACACGTAGTTTCAGACGATCTGTGCAAAACGATAACTTTGGTAACAACCCGGC 388
consensus_6475#1 AACGAAGGATTGAAGCTGCCGAAA----ACTCAAGGGCGCTTGCCCGTTACCTAAAAGAT 388
* * * ** * ** *** * ** * *
consensus_6475#0 GAGTG-TTGAAAACTACCAGTGACAAG--GATCGAAGGCGCATAATATCAGCATTTGAAA 430
consensus_6475#2 GAGTG-TNGAAAACTACCAGTGACAAG--GATCGAAGGCGCATAATATCGGNCTTTGAAA 445
consensus_6475#1 GCGGGATTCAAAATTCCCAACGGTACTTTGGGGGAAGAAGATTCATATATTTCCGTTAAC 448
* * * * **** * *** * * * **** * * **** * **
consensus_6475#0 AGGGTGTCTCGGCATCAGCCATCAGTAAAATTCTAAACATAAAGCAAGGCACGGTGTATG 490
consensus_6475#2 AGGGTGTCTCG------------------------------------------------- 456
consensus_6475#1 AGGAGCTTACGAGTTTTGACGTN------------------------------------- 471
*** * **
consensus_6475#0 GAATCATAAAAAATTATAANGAACGTTTGCAGATTGATTCTAAGAAGCGCGGGGGACAAA 550
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 ACCCCAAATTGTTGACACCAGAAGCAATAGATAGTATACATCGCTGGGTAGACGAAAATG 610
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 AGTCCGTCACGCTAAAGGTACTAACGGAGCGAGTGNTTTAAGGATCACGGTCTGCGCGTA 670
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 AGCTCTACCACGGTAGCGCGGGAAGTCAGAGCGTACAAAAATCCGACAAAGATGCCAAAA 730
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 ATTCAGTACCGATGCGATCGATGCACCTTAAACCACCAAACCGAGGAATGTCCGTTTGAC 790
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 GATGAAGTAATTGAAGGCTTGAAATGTTCCACCTGCAATGAACCACATGGTGCAAATGAT 850
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 TCGCAGTGCCCTACGCGCAAAGACCCGTTCGCGACGAGTCCACTCCCAAGCGAGGAAATT 910
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 GAGCATGAGGAAAGTTCGACACAATCTTTCCTGGACGCATTGTCACCGCTGAAAGCAGAA 970
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 CCGTCCTGGCCATCGTCCGCGACTCAAAGCCCTGCACGGGAAACTAGCATCGTGACTGCA 1030
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 ACACCGTTAAGTTTTCAAAACGACGTTTCTCACATTATCATCGAAGAAGCGGACGCACTG 1090
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 TCTACTTCCACCGATGCAAATTCCCTGCACGATCCTGAAACGCTGTTGACCATTTTCAAA 1150
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 GAGATGAGCGCCAAACTCAGGGCCTGCCGTACTAAGGCGGATCAAATCCAAGTACTGGGA 1210
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 GAGATCATTATTCGTTACGGATAGGTTGAGTGATAGTGACCGGTTTGCAACGCTAAGCAT 1270
consensus_6475#2 ------------------------------------------------------------
consensus_6475#1 ------------------------------------------------------------
consensus_6475#0 GGGCAGTGCCAGGGCAA 1287
consensus_6475#2 -----------------
consensus_6475#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||