cluster # 6483

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6483 cluster # 6483 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6483#0 length = 895 sequences # 3

consensus_6483#1 length = 491 sequences # 1
consensus_6483#2 length = 460 sequences # 1

consensusID : consensus_6483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 895
fasta sequence

                              [CCGGCTGTCTGTGCATCCTGTTTTCTTTGCTTTTTAAAATAATGTTTATCGACTTCCAGCGTGAGGAATGTGTTTGTGTTGGTTCGTAATGTCCTTTCCTTCTTGACAAGCGCGGTTTTTTCGCGTATTATTCGTTTCTCCGCATTAATAGCGTATTTCGAGGACAAGCTGTATTGTATCGAGAATGTTTCAAAATAACCAACGAGTTCTCGGTACTTTCTCGGTTGCTATGGAAAATGTGTAAATTTCGCTGCAGTTCTCCTATAGCAAATCGATGCTCGGAAAGGGGAACTTTTTCCTGATATCCCTTCGGCAAAATGTCACACGAATGTCTATGACCATGTCCGCTGGCCAACCCGGTTCTGGTGCGGTGGATCATCCGTCAACGAACGTCGCTCTGGATTGGATAATCAATGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGAGAACA]

[+] EMBL BM602518             [CCGGCTGTCTGTGCATCCTGTTTTCTTTGCTTTTTAAAATAATGTTTATCGACTTCCAGCGTGAGGAATGTGTTTGTGTTGGTTCGTAATGTCCTTTCCTTCTTGACAAGCGCGGTTTTTTCGCGTATTATTCGTTTCTCCGCATTAATAGCGTATTTCGAGGACAAGCTGTATTGTATCGAGAATGTTTCAAAATAACCAACGAGTTCTCGGTACTTTCTCGGTTGCTATGGAAAATGTGTAAATTTCGCTGCAGTTCTCCTATAGCAAATCGATGCTCGGAAAGGGGAACTTTTTCCTGATATCCCTTCGGCAAAATGTCACACGAATGTCTATGACCATGTCCGCTGGCCAACCCGGTTCTGGTGCGGTGGATCATCCGTCAACGAACGTCGCTCTGGATTGGATAATCAATGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAACCCTACCCCGAGATGATCCGACAAATTTTGCTAAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGC                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM655712             [                                                                                                                                                                                                                                                                                                                                                                                   ccGATCATCCGTCAACGAACGTCGCTCTGGATTGGATAATCAATGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAG                                     ]
[+] EMBL BM634267             [                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccgCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGAGAACA]




>consensus_6483#0
CCGGCTGTCTGTGCATCCTGTTTTCTTTGCTTTTTAAAATAATGTTTATCGACTTCCAGC
GTGAGGAATGTGTTTGTGTTGGTTCGTAATGTCCTTTCCTTCTTGACAAGCGCGGTTTTT
TCGCGTATTATTCGTTTCTCCGCATTAATAGCGTATTTCGAGGACAAGCTGTATTGTATC
GAGAATGTTTCAAAATAACCAACGAGTTCTCGGTACTTTCTCGGTTGCTATGGAAAATGT
GTAAATTTCGCTGCAGTTCTCCTATAGCAAATCGATGCTCGGAAAGGGGAACTTTTTCCT
GATATCCCTTCGGCAAAATGTCACACGAATGTCTATGACCATGTCCGCTGGCCAACCCGG
TTCTGGTGCGGTGGATCATCCGTCAACGAACGTCGCTCTGGATTGGATAATCAATGTTTT
GATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAA
AGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGG
TGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCG
CTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGG
ATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTA
GCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGC
AGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCG
GAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGAGAACA

consensusID : consensus_6483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTTGCTGAAAAACGACATTCTCGTTAAGCTGGTAGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGTGTTGCGAAGAAGGATGGCCCAGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAACTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGCGAGACT]

[+] EMBL BM608038             [CCGCCCACGCGTCCGCCCACGCGTCCGGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTTGCTGAAAAACGACATTCTCGTTAAGCTGGTAGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGTGTTGCGAAGAAGGATGGCCCAGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAACTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGCGAGACT]




>consensus_6483#1
CCGCCCACGCGTCCGCCCACGCGTCCGGCCGTCGCAGCTGGTTCGTCGCACGACTCGCAT
TAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTTGCTGAAAAACGACA
TTCTCGTTAAGCTGGTAGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTC
CCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGT
GTGTTGCGAAGAAGGATGGCCCAGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGG
TGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCA
AGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAACTGT
AAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTA
CCGGCGAGACT

consensusID : consensus_6483#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [CCGCGGACGCGTGGGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCA]

[+] EMBL BM632146             [CCGCGGACGCGTGGGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCA]




>consensus_6483#2
CCGCGGACGCGTGGGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTC
GCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAAC
GACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCC
GGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCG
CGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTAC
AAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATG
TCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAA
TTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6483#0      CCGGCTGTCTGTGCATCCTGTTTTCTTTGCTTTTTAAAATAATGTTTATCGACTTCCAGC 60
consensus_6483#2      ------------------------------------------------------------
consensus_6483#1      ------------------------------------------------------------
                                                                                  

consensus_6483#0      GTGAGGAATGTGTTTGTGTTGGTTCGTAATGTCCTTTCCTTCTTGACAAGCGCGGTTTTT 120
consensus_6483#2      ------------------------------------------------------------
consensus_6483#1      ------------------------------------------------------------
                                                                                  

consensus_6483#0      TCGCGTATTATTCGTTTCTCCGCATTAATAGCGTATTTCGAGGACAAGCTGTATTGTATC 180
consensus_6483#2      ------------------------------------------------------------
consensus_6483#1      ------------------------------------------------------------
                                                                                  

consensus_6483#0      GAGAATGTTTCAAAATAACCAACGAGTTCTCGGTACTTTCTCGGTTGCTATGGAAAATGT 240
consensus_6483#2      ------------------------------------------------------------
consensus_6483#1      ------------------------------------------------------------
                                                                                  

consensus_6483#0      GTAAATTTCGCTGCAGTTCTCCTATAGCAAATCGATGCTCGGAAAGGGGAACTTTTTCCT 300
consensus_6483#2      ------------------------------------------------------------
consensus_6483#1      ------------------------------------------------------------
                                                                                  

consensus_6483#0      GATATCCCTTCGGCAAAATGTCACACGAATGTCTATGACCATGTCCGCTGGCCAACCCGG 360
consensus_6483#2      ------------------------------------------------------------
consensus_6483#1      ------------------------------------------------------------
                                                                                  

consensus_6483#0      TTCTGGTGCGGTGGATCATCCGTCAACGAACGTCGCTCTGGATTGGATAATCAATGTTTT 420
consensus_6483#2      ----------------------------------------CCGCGGACGCGTGG-GTTTT 19
consensus_6483#1      ----------------------------------------------CCGCCCACGCGTCC 14
                                                                               *  

consensus_6483#0      GATTTCATTTCTG-CCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATA 479
consensus_6483#2      GATTTCATTTCTG-CCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATA 78
consensus_6483#1      GCCCACGCGTCCGGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATA 74
                      *    *   ** * **********************************************

consensus_6483#0      AAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTG 539
consensus_6483#2      AAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTG 138
consensus_6483#1      AAGCCCTGCCCCGAGATGATCCGACAAATTTTGCTGAAAAACGACATTCTCGTTAAGCTG 134
                      ******************************* ****************************

consensus_6483#0      GTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCC 599
consensus_6483#2      GTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCC 198
consensus_6483#1      GTAGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCC 194
                      ** *********************************************************

consensus_6483#0      GCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAG 659
consensus_6483#2      GCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAG 258
consensus_6483#1      GCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGTGTTGCGAAGAAG 254
                      *********************************************** ************

consensus_6483#0      GATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTT 719
consensus_6483#2      GATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTT 318
consensus_6483#1      GATGGCCCAGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTT 314
                      ******** ***************************************************

consensus_6483#0      AGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCG 779
consensus_6483#2      AGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCG 378
consensus_6483#1      AGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCG 374
                      ************************************************************

consensus_6483#0      CAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGC 839
consensus_6483#2      CAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGC 438
consensus_6483#1      CAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAACTGTAAATAAGCGGCAGC 434
                      ****************************************** *****************

consensus_6483#0      GGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGAGAACA- 895
consensus_6483#2      GGAAGTCCGTTAAATAAAGTCA----------------------------------- 460
consensus_6483#1      GGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGCGAGACT 491
                      **********************