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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1120 fasta sequence
[CAGATCGCGCAGAGGTTTGACGACGTTGCCGAGGAGGATCAAAGCTCAGGTATACCCTAACAAAAAATAGATCCTATTACTGCTGTACAAACCTTGGACCTGATCCTTTTTAACATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCCCTACTAGTAGAGAATAATTCAAAATATCCCACCTGCATTCTGTTTTATGAATTGTGGTGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACCAAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGCTCTTTCTTTTCACGACCGGTTATTCTAGAAAATATANCAAAAATAGTCAATTATGGACAATGGTGGAACAGCGGGAGGCAACAACATACTTAGTCTGAAGAAAACATATCTTAAATATGCAGCAGCTTCAGGTGTTANANCTATTCTCGCCGTAGCACAATCTTTCTCTCTCTGTAAAGAATTTCACTAGTTATATACGGATTTTTATGTTTTTGCTGTTATAGTTTGATTTTGTTTTTCAATTGATTTATTTGTTCGACTTATTTTACATGGTCTTTAATGCTGTGGAATGACTGATATGTTAATATCTAAACAGATGAATACAAAATTGTTGATTTGTTGACAGAAATAATTATAAGACCGATGCTACTGATTGATTAAACCTTTTCTCCTTGTATGACAAATGCTTAATTTTGATAGTTTAACTTGCCATAGATTTTAGTTTAACTTGTCATAGATTAGGTGAAATTAATTTTTGTTATTCGTTATTGGTTATTGGTGGTAATATCTATTACTCAATTTCAATAATAGAGTCAATTCAAGAATGTGTAGCTCAGCATTTTATAATTGAATCTAGTGATTCCAACGACAACACAATGTTCCTGTGCCACTAATGATAAAGAAACCTAAAATTAAAAAAAGAAAAGAAAATAAACAATGTCTTCCGTGCATGGAAATGATTTCTGTTACAAACAAGACGGCAAACAATGTATTCGCGTGGTTTTATCTGATGCATAGCATATTACACATTATTTCTATTAATCTCTGTT]
[+] EMBL AL696967 [CAGATCGCGCAGAGGTTTGACGACGTTGCCGAGGAGGATCAAAGCTCAGGTATACCCTAACAAAAAATAGATCCTATTACTGCTGTACAAACCTTGGACCTGATCCTTTTTAACATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCCCTACTAGTAGAGAATAATTCAAAATATCCCACCTGCATTCTGTTTTATGAATTGTGGTGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACCAAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGCTCTTTCTTTTCACGACCGGTTATTCTAGAAAATATANCAAAAATAGTCAATTATGGACAATGGTGGAACAGCGGGAGGCAACAACATACTTAGTCTGAAGAAAACATATCTTAAATATGCAGCAGCTTCAGGTGTTANANCTATTCTCGCC ]
[+] EMBL BX621705 [ ACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACCAAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGCTCTTT TTTTCACGACCGGTTATTCTAGAAAATATA AAAAAATAGTCAATT TGGACAATGGTGGAACAGCGGGAGGCAACAACATACTTAGT TGAAGAAAACATATCTTAAATATGCAGCAGCTTCA GTGTT TTTTTCTCGCTGTAGCACAATCTTTCTCTCTCTGTAAAGAATTTCACTAGTTATATACGGATTTTTATGTTTTTGCTGTTATAGTTTGATTTTGTTTTTCAATTGATTTATTTGTTCGACTTATTTTACATGGTCTTTAATGCTGTGGAATGACTGATATGTTAATATCTAAACAGATGAATACAAAATTGTTGATTTGTTGACAGAAATAATTATAAGACCGATGCTACTGATTGATTAAACCTTTTCTCCTTGTATGACAAATGCTTAATTTTGATAGTTTAACTTGCCATAGATTTTAGTTTAACTTGTCATAGATTAGGTGAAATTAATTTTTGTTATTCGTTATTGGTTATTGGTGGTAATATCTATTACTCAATTTCAATAATAGAGT ]
[+] EMBL BM613567 [ taaaTTATTTTACAGGGGCTTTAATGGTGGGGAATGACTGATATGTTAATATCTAAACAGATGAATACAAAATTGTTGATTTGTTGACAAAAATAATTATAAAACCGATGCTACTGATT ]
[+] EMBL BX609976 [ TATTGGTTATTGGTGGTAATATCTATTACTCAATTTCAATAATAGAGTCAATTCAAGAATGTGTAGCTCAGCATTTTATAATTGAATCTAGTGATTCCAACGACAACACAATGTTCCTGTGCCACTAATGATAAAGAAACCTAAAATTAAAAAAAGAAAAGAAAATAAACAATGTCTTCCGTGCATGGAAATGATTTCTGTTACAAACAAGACGGCAAACAATGTATTCGCGTGGTTTTATCTGATGCATAGCATATTACACATTATTTCTATTAATCTCTGTT]
consensusID : consensus_6490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[AGGCAGAATCGGCACGATGGATGACGACGTTTGCCGAGGAAGGCATAAAGCTCAGGTATACCCTAACAAAAAATAGATCCTATTACTGCTTACAAACCTTGACCTGATCCTTTTTAACATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCCCTACGTAGTAGAGAAGTAATTCAAGAATATCCCACCTGCATTCTGTTTTATGAATTGTGGTGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACCAAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGGCTCTTGTTGATTNCACGACCGGGTGTATTGCTAGGAAAGATATGANCACAGCACATAGTCAACTTTGGACAAATGGTGGAACAGGCGGGAGGCAACAANCATACTTTAGCTTGAAGAAAACATATCTTTAAGATATGCAAGCAGCCTTCAGTGTATCTNGANTTCTCGCTTGTAGCACAATCTTTTNCATTCTCTCTGGTAAACGAATTTCACTAGTTNAATATAA]
[+] EMBL BX468158 [AGGCAGAATCGGCACGATGGATGACGACGTTTGCCGAGGAAGGCATAAAGCTCAGGTATACCCTAACAAAAAATAGATCCTATTACTGCTTACAAACCTTGACCTGATCCTTTTTAACATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCCCTACGTAGTAGAGAAGTAATTCAAGAATATCCCACCTGCATTCTGTTTTATGAATTGTGGTGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACCAAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGGCTCTTGTTGATTNCACGACCGGGTGTATTGCTAGGAAAGATATGANCACAGCACATAGTCAACTTTGGACAAATGGTGGAACAGGCGGGAGGCAACAANCATACTTTAGCTTGAAGAAAACATATCTTTAAGATATGCAAGCAGCCTTCAGTGTATCTNGANTTCTCGCTTGTAGCACAATCTTTTNCATTCTCTCTGGTAAACGAATTTCACTAGTTNAATATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6490#0 ---CAGATCGCGCA-GAGGTTTGACGACGTT-GCCGAGGAGGAT-CAAAGCTCAGGTATA 54
consensus_6490#1 AGGCAGAATCGGCACGATGGATGACGACGTTTGCCGAGGAAGGCATAAAGCTCAGGTATA 60
**** *** ** * ********** ******** * **************
consensus_6490#0 CCCTAACAAAAAATAGATCCTATTACTGCTGTACAAACCTTGGACCTGATCCTTTTTAAC 114
consensus_6490#1 CCCTAACAAAAAATAGATCCTATTACTGCT-TACAAACCTTG-ACCTGATCCTTTTTAAC 118
****************************** *********** *****************
consensus_6490#0 ATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCC 174
consensus_6490#1 ATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCC 178
************************************************************
consensus_6490#0 CTAC-TAGTAGAGAA-TAATTCAA-AATATCCCACCTGCATTCTGTTTTATGAATTGTGG 231
consensus_6490#1 CTACGTAGTAGAGAAGTAATTCAAGAATATCCCACCTGCATTCTGTTTTATGAATTGTGG 238
**** ********** ******** ***********************************
consensus_6490#0 TGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACC 291
consensus_6490#1 TGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACC 298
************************************************************
consensus_6490#0 AAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAG-C 350
consensus_6490#1 AAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGGC 358
********************************************************** *
consensus_6490#0 TCTTTCT--TTTCACGACCGGTTATT---CTAGAAAATATANCAAAA------ATAGTCA 399
consensus_6490#1 TCTTGTTGATTNCACGACCGGGTGTATTGCTAGGAAAGATATGANCACAGCACATAGTCA 418
**** * ** ********* * * **** *** *** * * *******
consensus_6490#0 ATTATGGACAA-TGGTGGAACAG-CGGGAGGCAACAAC-ATACTT-AGTCTGAAGAAAAC 455
consensus_6490#1 ACTTTGGACAAATGGTGGAACAGGCGGGAGGCAACAANCATACTTTAGCTTGAAGAAAAC 478
* * ******* *********** ************* ****** ** **********
consensus_6490#0 ATATCTT--AAATATGCA-GCAGCTTCAGGTGTTANANCTATTCTCGCC-GTAGCACAAT 511
consensus_6490#1 ATATCTTTAAGATATGCAAGCAGCCTTCAGTGTATCTNGANTTCTCGCTTGTAGCACAAT 538
******* * ******* ***** * **** * ******* **********
consensus_6490#0 CTTTCTCTCTCT-----GTAAA-GAATTTCACTAGTTATATACGGATTTTTATGTTTTTG 565
consensus_6490#1 CTTTTNCATTCTCTCTGGTAAACGAATTTCACTAGTTNAATATAA--------------- 583
**** * *** ***** ************** ***
consensus_6490#0 CTGTTATAGTTTGATTTTGTTTTTCAATTGATTTATTTGTTCGACTTATTTTACATGGTC 625
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 TTTAATGCTGTGGAATGACTGATATGTTAATATCTAAACAGATGAATACAAAATTGTTGA 685
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 TTTGTTGACAGAAATAATTATAAGACCGATGCTACTGATTGATTAAACCTTTTCTCCTTG 745
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 TATGACAAATGCTTAATTTTGATAGTTTAACTTGCCATAGATTTTAGTTTAACTTGTCAT 805
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 AGATTAGGTGAAATTAATTTTTGTTATTCGTTATTGGTTATTGGTGGTAATATCTATTAC 865
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 TCAATTTCAATAATAGAGTCAATTCAAGAATGTGTAGCTCAGCATTTTATAATTGAATCT 925
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 AGTGATTCCAACGACAACACAATGTTCCTGTGCCACTAATGATAAAGAAACCTAAAATTA 985
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 AAAAAAGAAAAGAAAATAAACAATGTCTTCCGTGCATGGAAATGATTTCTGTTACAAACA 1045
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 AGACGGCAAACAATGTATTCGCGTGGTTTTATCTGATGCATAGCATATTACACATTATTT 1105
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 CTATTAATCTCTGTT 1120
consensus_6490#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||