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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1407 fasta sequence
[CTGGGGTAAAAGCAAATGTACCACAGATACCACCGTTCCACAGAAGCGTGGCTGTGCGCCGGTCAAGATGGACAAAAAGAAGGTAGTGAAAAAGACGAGCGAAAAGGCAAAAGATAGACTGAAATCCGTCTGGAGCAAGCTGGAGGGCAGGGAGTGTGGCGTTGCGACCGATCTGCTGATCGATGGGCCGGTCAAAAGTGGCACCAAGCTGCGCTTCCACACACGAACGATCGATCTGATCAACGATAATGCCGTTTAGTGGATCGCACGGGACAACAAACACTCACCCGTTGCTTCGTCCCCGGATCCTATACTACTAGTGCACTGCTAACGCGACTACCAGAAGATTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCCTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGGAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG--TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT-CCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAA-TGCAAAAAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATGACGCACGTGGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCAGCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAATTATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGTGAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAAGGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAATAAATATAATCTTTTTACGTTCTACCAACAA]
[+] EMBL CNS09DQV [CTGGGGTAAAAGCAAATGTACCACAGATACCACCGTTCCACAGAAGCGTGGCTGTGCGCCGGTCAAGATGGACAAAAAGAAGGTAGTGAAAAAGACGAGCGAAAAGGCAAAAGATAGACTGAAATCCGTCTGGAGCAAGCTGGAGGGCAGGGAGTGTGGCGTTGCGACCGATCTGCTGATCGATGGGCCGGTCAAAAGTGGCACCAAGCTGCGCTTCCACACACGAACGATCGATCTGATCAACGATAATGCCGTTTAGTGGATCGCACGGGACAACAAACACTCACCCGTTGCTTCGTCCCCGGATCCTATACTACTAGTGCACTGCTAACGCGACTACCAGAAGATTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCCTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGGAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT CCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGC ]
[+] EMBL BX608072 [ AATGCAAACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCGTTTCTGCTGTGCAATTAATCGATAGTTTGGTAAATGTTTTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCCGTTTGCTAGACAAAGCAGATCTCACAACGGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGT GTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT CCCCCAGATG TTTTTTATTACCTTATTTTCCCACATCCTTAAACTGTGCATCGCGTAGCGCATACTAACTCATTAGTCAACAGACAATAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCAGACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGAAATAGTCTGATTTTAAAAGCAAAA ]
[-] EMBL CNS09DQW [ TAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAAAACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT CCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAA TGCAAAAAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATGACGCACGTGGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCAGCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAATTATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGTGAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAAGGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAATAAATATAATCTTTTTACGTTCTACCAACAA]
[-] EMBL CNS08DNK [ ACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGGACTAAGTTGTACACCGCCCCGGGCGGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGGGAAACTTGTATGTGTGTATTTTCCCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTAGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAAGTGCAAAAAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATAACGCACGTGGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCAGCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAATTATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGTGAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAAGGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAATAAATATA ]
consensusID : consensus_6500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[GCAGAATNGCCCCGAGGTTNTCACCCGTTGCTTCGTCCCCGGATCTATACTACTAGTGCACTGCTAACGCGACTACCGGAAGGTTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCTTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCGTTTCTGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTCTTTTTTTGTAGTATTCGTATTTTTGGGCTGACTGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCGTTTTGCTAGACAAAGCAGATCTCACAACTGGATTATAACCCACTGCCCGAACTCTGTTGTACACCGACCGGGCAGTGATTGTGCGATTGATGGTGTGTGTGTGC]
[+] EMBL AL931516 [GCAGAATNGCCCCGAGGTTNTCACCCGTTGCTTCGTCCCCGGATCTATACTACTAGTGCACTGCTAACGCGACTACCGGAAGGTTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCTTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCGTTTCTGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTCTTTTTTTGTAGTATTCGTATTTTTGGGCTGACTGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCGTTTTGCTAGACAAAGCAGATCTCACAACTGGATTATAACCCACTGCCCGAACTCTGTTGTACACCGACCGGGCAGTGATTGTGCGATTGATGGTGTGTGTGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6500#0 CTGGGGTAAAAGCAAATGTACCACAGATACCACCGTTCCACAGAAGCGTGGCTGTGCGCC 60
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 GGTCAAGATGGACAAAAAGAAGGTAGTGAAAAAGACGAGCGAAAAGGCAAAAGATAGACT 120
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 GAAATCCGTCTGGAGCAAGCTGGAGGGCAGGGAGTGTGGCGTTGCGACCGATCTGCTGAT 180
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 CGATGGGCCGGTCAAAAGTGGCACCAAGCTGCGCTTCCACACACGAACGATCGATCTGAT 240
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 CAACGATAATGCCGTTTAGTGGATCGCACGGGACAACAAACACTCACCCGTTGCTTCGTC 300
consensus_6500#1 -----------------------GCAGAATNGCCCCGAGGTTNTCACCCGTTGCTTCGTC 37
* * * * * *****************
consensus_6500#0 CCCGGATCCTATACTACTAGTGCACTGCTAACGCGACTACCAGAAGATTTAAACGTTAGT 360
consensus_6500#1 CCCGGATC-TATACTACTAGTGCACTGCTAACGCGACTACCGGAAGGTTTAAACGTTAGT 96
******** ******************************** **** *************
consensus_6500#0 TTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCCTGCGAGAGAGGA 420
consensus_6500#1 TTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCTTGCGAGAGAGGA 156
*********************************************** ************
consensus_6500#0 GAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAA 480
consensus_6500#1 GAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAA 216
************************************************************
consensus_6500#0 ACGGAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCG 540
consensus_6500#1 ACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCG 276
*** ***************************************************** **
consensus_6500#0 TTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTTGTGTTTTGTAGTATT 600
consensus_6500#1 TTTCTGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTCTTTTTTTGTAGTATT 336
**** *************************************** * ************
consensus_6500#0 CGTATTTTGGG--CGAC-GTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGC 657
consensus_6500#1 CGTATTTTTGGGCTGACTGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCGTTTTGC 396
******** ** *** ***************** ***************** *****
consensus_6500#0 TAGACAAAGCAGATCTCACAACCG-ATTATAACCCACCTGCCCGAACTCTGTTGTACACC 716
consensus_6500#1 TAGACAAAGCAGATCTCACAACTGGATTATAACCCAC-TGCCCGAACTCTGTTGTACACC 455
********************** * ************ **********************
consensus_6500#0 GCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGC 776
consensus_6500#1 G-ACCGGGCAGTGATTGTGCGATTGATGGTGTGTGTGTGC-------------------- 494
* ******************************* *****
consensus_6500#0 TTGTATGTGTGTATTTTCCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTA 836
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 AACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGT 896
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 GAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAA 956
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 CGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAATGCAAA 1016
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 AAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATGACGCACGT 1076
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 GGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCA 1136
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 GCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAAT 1196
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 TATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGT 1256
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 GAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAA 1316
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 GGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAA 1376
consensus_6500#1 ------------------------------------------------------------
consensus_6500#0 TAAATATAATCTTTTTACGTTCTACCAACAA 1407
consensus_6500#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||