cluster # 6501

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Anopheles gambiae
cluster # 6501 cluster # 6501 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6501#0 length = 787 sequences # 3

consensus_6501#1 length = 439 sequences # 1
consensus_6501#2 length = 136 sequences # 1

consensusID : consensus_6501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 787
fasta sequence

                              [AACTCCTGGAAAANCCCAGTATAATCATCATCACCGCGTAAAAAAACCGCGCCAAACCTTATTTCATTCCCCGTTTTGAGTTTAAAATATNGTTAATATTTAAATCAAATTATTATTTTACAATGACAATTTTTTTGCACAGCTTAGCTAAAAACATAACAAAAAAGTATGTACGTTCTTGGAACACGTACTTGCCTTTNNTTCTTTCTTTTTTTTTTTGTAAAAAAACACTATAATGTATATAAAACAGACAATTAAGAACAGAGTGTTGTGTGTGTACATGTACCCTAAAAAAGCACATCATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAA-G-TCTAAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTTTCGACATTTCTCTCTTTTGCTGTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACGAACCAGTCGTAAGATCTTTCTTCCATTTTACCTCTCCACAGCCACGCCGTTGTTACTGAATCATCGCGCCCTTGTGAAGCAACCATGTATACAGAACAAAACCCTGAGAGTGGTGTCTGTCG]

[-] EMBL BX619378             [AACTCCTGGAAAANCCCAGTATAATCATCATCACCGCGTAAAAAAACCGCGCCAAACCTTATTTCATTCCCCGTTTTGAGTTTAAAATATNGTTAATATTTAAATCAAATTATTATTTTACAATGACAATTTTTTTGCACAGCTTAGCTAAAAACATAACAAAAAAGTATGTACGTTCTTGGAACACGTACTTGCCTTTNNTTCTTTCTTTTTTTTTTTGTAAAAAAACACTATAATGTATATAAAACAGACAATTAAGAACAGAGTGTTGTGTGTGTACATGTACCCTAAAAAAGCACATTATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAANGTTNTAGAACAGTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTcgccnn                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX627880             [                                                                                                                                                                                                                                      CTATAATGTATATAAAACAGACAATTAAGAACAGAGTGTTGTGTGTGTACATGTACCCTAAAAAAGCACATCATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAA G TCTAAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTTTCGACATTTCTCTCTTTTGCTGTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACGAACCAGTCGTAAGATCTTTCTTCCATTTTACCTCTCCACAGCCACGCCGTTGTTACTGAATCATCGCGCCCTTGTGAAGCAACCATGTATACAGAACAAAACCCTGAGAGTGGTGTCTGTCG]
[+] EMBL AGA285763            [                                                                                                                                                                                                                                                                                                           ATCATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAA G TCTAAAACGTTTTAAAATAGCACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTTTCGACATTTCTCTCTTTTGCTGTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACGAACCAGTCGTAAGATCTTTCTTCCATTTTACCTCTCCACAGCCACACCGTTGTTA                                                                   ]




>consensus_6501#0
AACTCCTGGAAAANCCCAGTATAATCATCATCACCGCGTAAAAAAACCGCGCCAAACCTT
ATTTCATTCCCCGTTTTGAGTTTAAAATATNGTTAATATTTAAATCAAATTATTATTTTA
CAATGACAATTTTTTTGCACAGCTTAGCTAAAAACATAACAAAAAAGTATGTACGTTCTT
GGAACACGTACTTGCCTTTNNTTCTTTCTTTTTTTTTTTGTAAAAAAACACTATAATGTA
TATAAAACAGACAATTAAGAACAGAGTGTTGTGTGTGTACATGTACCCTAAAAAAGCACA
TCATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAAGTCT
AAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGT
TTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATA
TCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCA
ATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTTTC
GACATTTCTCTCTTTTGCTGTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGT
ATACGAACCAGTCGTAAGATCTTTCTTCCATTTTACCTCTCCACAGCCACGCCGTTGTTA
CTGAATCATCGCGCCCTTGTGAAGCAACCATGTATACAGAACAAAACCCTGAGAGTGGTG
TCTGTCG

consensusID : consensus_6501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [GCACATTATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAAGTCTAAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGACATTTCTCTCTTTTTCTCTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACGAACCAGTCGTAAGATCCGG]

[-] EMBL BM623152             [GCACATTATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAAGTCTAAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGTAGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGACATTTCTCTCTTTTTCTCTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACGAACCAGTCGTAAGATCCGG]




>consensus_6501#1
GCACATTATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTA
AGTCTAAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTAATGT
AGTGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATT
CAATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAA
ACTCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGACAT
TTCTCTCTTTTTCTCTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTGAGTATACG
AACCAGTCGTAAGATCCGG

consensusID : consensus_6501#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 136
fasta sequence

                              [CCTGCCTCCCACACTCACCGCCTCCGCGCTCCCGACAGACACCACTCACAGGGGTAGGTCCCGTATACATGGTGGCCTCACAAGGGCGCGATGATACAGTAACAACGGCGCGGCCGTGGAGAGGTAAAATGGAAGA]

[+] EMBL BX618173             [CCTGCCTCCCACACTCACCGCCTCCGCGCTCCCGACAGACACCACTCACAGGGGTAGGTCCCGTATACATGGTGGCCTCACAAGGGCGCGATGATACAGTAACAACGGCGCGGCCGTGGAGAGGTAAAATGGAAGA]




>consensus_6501#2
CCTGCCTCCCACACTCACCGCCTCCGCGCTCCCGACAGACACCACTCACAGGGGTAGGTC
CCGTATACATGGTGGCCTCACAAGGGCGCGATGATACAGTAACAACGGCGCGGCCGTGGA
GAGGTAAAATGGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6501#0      AACTCCTGGAAAANCCCAGTATAATCATCATCACCGCGTAAAAAAACCGCGCCAAACCTT 60
consensus_6501#1      ------------------------------------------------------------
consensus_6501#2      ------------------------------------------------------------
                                                                                  

consensus_6501#0      ATTTCATTCCCCGTTTTGAGTTTAAAATATNGTTAATATTTAAATCAAATTATTATTTTA 120
consensus_6501#1      ------------------------------------------------------------
consensus_6501#2      ------------------------------------------------------------
                                                                                  

consensus_6501#0      CAATGACAATTTTTTTGCACAGCTTAGCTAAAAACATAACAAAAAAGTATGTACGTTCTT 180
consensus_6501#1      ------------------------------------------------------------
consensus_6501#2      ------------------------------------------------------------
                                                                                  

consensus_6501#0      GGAACACGTACTTGCCTTTNNTTCTTTCTTTTTTTTTTTGTAAAAAAACACTATAATGTA 240
consensus_6501#1      ------------------------------------------------------------
consensus_6501#2      ------------------------------------------------------------
                                                                                  

consensus_6501#0      TATAAAACAGACAATTAAGAACAGAGTGTTGTGTGTGTACATGTACCCTAAAAAAGCACA 300
consensus_6501#1      -------------------------------------------------------GCACA 5
consensus_6501#2      ------------------------------------------------------------
                                                                                  

consensus_6501#0      TCATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAAGTCT 360
consensus_6501#1      TTATTAACAATCATCCGATGGCGTACGACGCGTGGTACATGATTGCGTACATTTAAGTCT 65
consensus_6501#2      ------------------------------------------------------------
                                                                                  

consensus_6501#0      AAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTA---ATGTAG 417
consensus_6501#1      AAAACGTTTTAAAATAACACTAACGCCTTAACCTAATGCTGCTTTGTACTA---ATGTAG 122
consensus_6501#2      ------------------CCTGCCTCCCACACTCACCGCCTCCGCGCTCCCGACAGACAC 42
                                         **  * **   **  *  **  *   *  *     *   * 

consensus_6501#0      TGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCA 477
consensus_6501#1      TGTTTATGGATTTTGTTTGTGTATATATTTACTTTCCCCACGCAAAAAACGGAGCATTCA 182
consensus_6501#2      CACTCACAGGGGTAGGTCCCGTATACATGGTGGCCTCACAAGGGCGCGATGATACAGTAA 102
                         * *  *   * * *   ***** **        * ** *      * *   ** * *

consensus_6501#0      ATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAAC 537
consensus_6501#1      ATATCGCATTCTTGTAGCTGAATACCGATGCAGAAACAAAAAACAACAACGACAAAAAAC 242
consensus_6501#2      CAACGGCGCGGCCGTGGAGAGGTAA-AATGGAAGA------------------------- 136
                        *  **      ** *     **   *** *  *                         

consensus_6501#0      TCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCT 597
consensus_6501#1      TCAATCACTTTACTGTTCATTGCACTTTACCGTGGCCACAGGTGTATTTTCTCTCTCTCT 302
consensus_6501#2      ------------------------------------------------------------
                                                                                  

consensus_6501#0      TTCGACATTTCTCTCTTTTGCTGTCGATTCCATTCTCACACAGCTGTGCTAAATGCTTTG 657
consensus_6501#1      CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT------CTCTCTCTTTCG 356
consensus_6501#2      ------------------------------------------------------------
                                                                                  

consensus_6501#0      AGTATACGAACCAGTCGTAAGATCTTTCTTCCATTTTACCTCTCCACAGCCACGCCGTTG 717
consensus_6501#1      A----------CATTTCTCTCTTTTTCTCTCGATTCCATTCTCACACAGCTGTGCTAAAT 406
consensus_6501#2      ------------------------------------------------------------
                                                                                  

consensus_6501#0      TTACTGAATCATCGCGCCCTTGTGAAGCAACCATGTATACAGAACAAAACCCTGAGAGTG 777
consensus_6501#1      GCTTTGAGTATACGAACCAGT-CGTAAGATCCGG-------------------------- 439
consensus_6501#2      ------------------------------------------------------------
                                                                                  

consensus_6501#0      GTGTCTGTCG 787
consensus_6501#1      ----------
consensus_6501#2      ----------