cluster # 6533

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Anopheles gambiae
cluster # 6533 cluster # 6533 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6533#0 length = 686 sequences # 4

consensus_6533#1 length = 639 sequences # 1

consensusID : consensus_6533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 686
fasta sequence

                              [CCGGTACGTACGCTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGTAAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGGTTCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATTATCGAAATGCAGGAGCCTGTGACACT]

[+] EMBL BM601478             [CCGGTACGTACGCTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGTAAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGGTTCGGCTA                                                                               ]
[+] EMBL BM579727             [    ccgGTACGCTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGTAAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGC GGGTTCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATTATCGAAATGCAGGAGCCTGTGACACT]
[+] EMBL AGA284917            [            CTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGTAAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX601738             [                                                 TATTGTGTTGTAAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATC                                                                                                                                       ]




>consensus_6533#0
CCGGTACGTACGCTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGT
AAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGG
ATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAAT
TGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGAT
TCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCA
AGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCG
ACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGA
AGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTG
TTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGT
CCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGGT
TCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATT
ATCGAAATGCAGGAGCCTGTGACACT

consensusID : consensus_6533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 639
fasta sequence

                              [AGAATCCCCCGAGGTTATTTTATTGTGTTGTAAAGCATCACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGATCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATTATCGAAATGC]

[+] EMBL AL694140             [AGAATCCCCCGAGGTTATTTTATTGTGTTGTAAAGCATCACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGATCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATTATCGAAATGC]




>consensus_6533#1
AGAATCCCCCGAGGTTATTTTATTGTGTTGTAAAGCATCACATGTTCGAAGCGCGACTGA
ATGCTAGCCACGTTCTAAAGAAGGTCCTGGATGCCATCAAGGATCTTCTGAACGAAGCCA
CATTCGATTGTAGCGATTCTGGCATTCAATTGCAAGCGATGGACAACTCCCACGTTTCCC
TTGTATCGCTCTCACTACGGTCCGACGGATTCGACAAGTACCGGTGTGACCGGAACTTGT
CTATGGGAATGAACTTGGCCAACATGGCCAAGATTATGAAGTGTGCCAACAACGATGATA
CATTGACGATGAAAGCTCAGGACAATGCCGACACTGTAACTTTTATGTTCGAATCACAGA
ACCAAGAAAAGGTGTCCGATTACGAAATGAAGCTAATGAATCTGGACCAGGAACACTTGG
GCATTCCAGAAACGGATTATGCGTGCGTTGTTCGCATGCCAGCGATGGAGTTTGCACGCA
TCTGTCGTGATCTGTCGCAGTTCGGCGAGTCCGTTGTCATCTCCTGCACCAAAGAAGGTG
TGAAATTCTCGGCATCCGGTGATGCGGGATCGGCTAACATAAAGCTGGCGCAAACCTCGA
CCGTGGATAAAGAGGACGAATCGGTCATTATCGAAATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6533#0      CCGGTACGTACGCTTGCATCTCGTTGCTTGAGAGCTTTTTGTGTCATTTTATTGTGTTGT 60
consensus_6533#1      -----------------------------AGAATCCCCCGAGGTTATTTTATTGTGTTGT 31
                                                      * *       ** ***************

consensus_6533#0      AAAGCATCAACATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGG 120
consensus_6533#1      AAAGCATCA-CATGTTCGAAGCGCGACTGAATGCTAGCCACGTTCTAAAGAAGGTCCTGG 90
                      ********* **************************************************

consensus_6533#0      ATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAAT 180
consensus_6533#1      ATGCCATCAAGGATCTTCTGAACGAAGCCACATTCGATTGTAGCGATTCTGGCATTCAAT 150
                      ************************************************************

consensus_6533#0      TGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGAT 240
consensus_6533#1      TGCAAGCGATGGACAACTCCCACGTTTCCCTTGTATCGCTCTCACTACGGTCCGACGGAT 210
                      ************************************************************

consensus_6533#0      TCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCA 300
consensus_6533#1      TCGACAAGTACCGGTGTGACCGGAACTTGTCTATGGGAATGAACTTGGCCAACATGGCCA 270
                      ************************************************************

consensus_6533#0      AGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCG 360
consensus_6533#1      AGATTATGAAGTGTGCCAACAACGATGATACATTGACGATGAAAGCTCAGGACAATGCCG 330
                      ************************************************************

consensus_6533#0      ACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGA 420
consensus_6533#1      ACACTGTAACTTTTATGTTCGAATCACAGAACCAAGAAAAGGTGTCCGATTACGAAATGA 390
                      ************************************************************

consensus_6533#0      AGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTG 480
consensus_6533#1      AGCTAATGAATCTGGACCAGGAACACTTGGGCATTCCAGAAACGGATTATGCGTGCGTTG 450
                      ************************************************************

consensus_6533#0      TTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGT 540
consensus_6533#1      TTCGCATGCCAGCGATGGAGTTTGCACGCATCTGTCGTGATCTGTCGCAGTTCGGCGAGT 510
                      ************************************************************

consensus_6533#0      CCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGGT 600
consensus_6533#1      CCGTTGTCATCTCCTGCACCAAAGAAGGTGTGAAATTCTCGGCATCCGGTGATGCGGGAT 570
                      ********************************************************** *

consensus_6533#0      TCGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATT 660
consensus_6533#1      -CGGCTAACATAAAGCTGGCGCAAACCTCGACCGTGGATAAAGAGGACGAATCGGTCATT 629
                       ***********************************************************

consensus_6533#0      ATCGAAATGCAGGAGCCTGTGACACT 686
consensus_6533#1      ATCGAAATGC---------------- 639
                      **********