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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 996 fasta sequence
[CAGCAATATTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTCTGTTCCGGAGTGGGAACGTCTGGCGGTACATTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGGCCAGTTGGGCAAACCGTCCTCCCATCGAAAGTAACGGCGGTTCTTCGTCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATGGCTGCTCGGAAGTGCAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCAAGGGGTGCACTGGCTGTTACGCGACTCTCAGCTGGGATACTTACTATCAATTCTGCCATCAGCCGGCGTGGGATACTGAGAATAAAGTGAAGACGCAACTTCGCTGTACCAATCTCGATGGCACACTTGTCCGTTGGGAGGGAACTGTAGTCGATATGGCAATCTCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTTTTGGCCGATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTGTGGCAACCTAAATGGATCGGTTGAGGGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACGCACGTGCCATCTCAATAAATGGAATACCTATGAGTACGAACTGAAGATACGAATGTCCACTGGACTGGTGACCAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCGGAAACTTTACTCAAAGTCTCAACTATTCTGACCGCGTATGGTTCGTCGGCGTGTTGCGCGATTCGGTTCAATCCGGGATCGCGTCATCCGGAAATACCGATCAGCCACATTGGGACACAGTTAGCAGTGGATTTAACTTGAACATGGGAGGACAGGCCGGAAGTTTCGGTGTGCATTCGATGCGATTGGGACGCAAGAACCCGCTAGTCGAACTCCATTCAATCGGA]
[+] EMBL BX621217 [CAGCAATATTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTCTGTTCCGGAGTGGGAACGTCTGGCGGTACATTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGGCCAGTTGGGCAAACCGTCCTCCCATCGAAAGTAACGGCGGTTCTTCGTCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATGGCTGCTCGGAAGTGCAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCAAGGGGTGCACTGGCTGTTACGCGACTCTCAGCTGGGATACTTACTATCAATTCTGCCATCAGCCGGCGTGGGATACTGAGAATAAAGTGAAGACGCAACTTCGCTGTACCAATCTCGATGGCACACTTGTCCGTTGGGAGGGAACTGTAGTCGATATGGCAATCTCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTTTTGGCCGATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTGTGGCAACCTAAATGGATCGGTTGAGGGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACGCACGTGCCATCTCAATAAATGGAATACCTATGAGTACGAACTGAAGATACGAATGTCCACTGGACTGGTGACCAAACCCGTCGA ]
[+] EMBL AL931179 [ caGATCGCCGAGGCTGCATCTACGGTGAA CAATTGAA CGGACTGTGGC ACCTAAATGGATCGGTTGAGGGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACGCACGTGCCATCTCAATAAATGGAATACCTATGAGTACGAACTGAAGATACGAATGTCCACTGGACTGTTGACCAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCGGAAACTTTACTCAAAGTCTCAACTATTCTGACCGCGTATGGTTCGTCGGCGTGTTGCGCGATTCGGTTCAATCCGGGATCGCGTCATCCGGAAATACCGATCAGCCACATTGGGACACAGTTAGCAGTGGATTTAACTTGAACATGGGAGGACAGGCCGGAAGTTTCGGTGTGCATTCGATGCGATTGGGACGCAAGAACCCGCTAGTCGAACTCCATTCAATCGGA]
consensusID : consensus_6543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[CCGGCCAAACAAACACGCCGAAATCACAGCAATATTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTGTAAGTTTGTGAAGCTTGGTACTTTTTGTACTCTGCTAAAGAGACGTGAACGTCGTGAAACAAACCAAACAACAGCGAACAAACTAAACGTTTGACCATTCCACAACAGCTGTTCCGGAGTGGGAACGTCTGGCGGTACATTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGGCCAGTTGGGCAAACCGTCCTCCCATCGAAAGTAACGGCGGTTCTTCGTCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATGGCTGCTCGGAAGTGCAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCAAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATCGAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGACGTTCGCACTATCCTGGCCATGAGCCCGGGGGAGCGTTCTGCACGCCGGGCAGCGCAAGAACTCTTTGCGA]
[+] EMBL BM607265 [CCGGCCAAACAAACACGCCGAAATCACAGCAATATTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTGTAAGTTTGTGAAGCTTGGTACTTTTTGTACTCTGCTAAAGAGACGTGAACGTCGTGAAACAAACCAAACAACAGCGAACAAACTAAACGTTTGACCATTCCACAACAGCTGTTCCGGAGTGGGAACGTCTGGCGGTACATTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGGCCAGTTGGGCAAACCGTCCTCCCATCGAAAGTAACGGCGGTTCTTCGTCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATGGCTGCTCGGAAGTGCAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCAAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATCGAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGACGTTCGCACTATCCTGGCCATGAGCCCGGGGGAGCGTTCTGCACGCCGGGCAGCGCAAGAACTCTTTGCGA]
consensusID : consensus_6543#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[CCGCCCACGCGTCCGATCGAAAGTAACGGCGGTTCTTCATCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCACAACTTAAAGTACCATTTCTCCGAAGATGGCTGTTCGGAAGTGCATTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCGAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATCGAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGACGTTCGCACTATCCTGGCCATGAGCCCGGGGGAGCGTTCTGCACGCCGGGCAGCGCAAGAACTCTTTGCGAGCCTCTCGAATGGCGAGGAATACGTTACGGCAGCACAACTCGAAAAGCGTATGCGAGAAATTTACAAGATGGACAAAAAGCGCCGACGCACCCAGCCGGATGGTGCCGAAGCAGAAGGAAGCATGGAACACAGCTTGGGTGGAGGTGGTGGATCCGATGGTGGACGAT]
[+] EMBL BM618880 [CCGCCCACGCGTCCGATCGAAAGTAACGGCGGTTCTTCATCATCGCGCAAGAAATGGAACCTTGAAGATAAAAAGTCTCTTCACAACTTAAAGTACCATTTCTCCGAAGATGGCTGTTCGGAAGTGCATTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAACCACGCTCGAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATCGAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGACGTTCGCACTATCCTGGCCATGAGCCCGGGGGAGCGTTCTGCACGCCGGGCAGCGCAAGAACTCTTTGCGAGCCTCTCGAATGGCGAGGAATACGTTACGGCAGCACAACTCGAAAAGCGTATGCGAGAAATTTACAAGATGGACAAAAAGCGCCGACGCACCCAGCCGGATGGTGCCGAAGCAGAAGGAAGCATGGAACACAGCTTGGGTGGAGGTGGTGGATCCGATGGTGGACGAT]
consensusID : consensus_6543#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[GATCGCCGAGGCTCGATGGCCACTGTCGTTGGGAGGGAACTGTAGTCGATATGGCATATCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTTTGGCCGATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTGTGGCAACCTAAATGGATCGGTTGAGGGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACGCACGTGCCATCTCAATAAATGGAATACCTATGAGTACGAACTGAAGATACGAATGTCCACTGGACTGTTGACCAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCGGAAACTTTACTCAAAGTCTCAACTATTCTGATCGCGTATGGTTCGTCGGCGTCTTGCGCGATTCGGCTCAATCCGGGATCGCGTCATCC]
[+] EMBL AL931131 [GATCGCCGAGGCTCGATGGCCACTGTCGTTGGGAGGGAACTGTAGTCGATATGGCATATCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTTTGGCCGATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTGTGGCAACCTAAATGGATCGGTTGAGGGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACGCACGTGCCATCTCAATAAATGGAATACCTATGAGTACGAACTGAAGATACGAATGTCCACTGGACTGTTGACCAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCGGAAACTTTACTCAAAGTCTCAACTATTCTGATCGCGTATGGTTCGTCGGCGTCTTGCGCGATTCGGCTCAATCCGGGATCGCGTCATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6543#0 CAGCAATATTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTCTGTTCCGGAGT 60
consensus_6543#3 ------------------------------------------------------------
consensus_6543#1 ------------------------------------------------------------
consensus_6543#2 ------------------------------------------------------------
consensus_6543#0 GGGAACGTCTGGCGGTACATTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGG 120
consensus_6543#3 ------------------------------------------------------------
consensus_6543#1 ------------------------------------------------------------
consensus_6543#2 ------------------------------------------------------------
consensus_6543#0 CCAGTTGGGCAAACCGTCCTCCCATCGAAAGTAACGGCGGTTCTTCGTCATCGCGCAAGA 180
consensus_6543#3 ------------------------------------------------------------
consensus_6543#1 --------------------------CCGGCCAAACAAACACGCCGAAATCACAGCAATA 34
consensus_6543#2 ------------------------------------------------------------
consensus_6543#0 AATGGAACCTTGAAGATAAAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATG 240
consensus_6543#3 ------------------------------------------------------------
consensus_6543#1 TTATAAATCAACAATTTGTAACGCAGTACCCACACGTATTGTAAGTTTGTGAAGCTTGGT 94
consensus_6543#2 ------------------------------------------------------------
consensus_6543#0 GCTGCTCGGAAGTGCAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCG 300
consensus_6543#3 ------------------------------------------------------------
consensus_6543#1 ACTTTTTGTACTCTGCTAAAGAGACGTGAACGTCGTGAAACAAACCAAACAACAGCGAAC 154
consensus_6543#2 ------------------------------------------------------------
consensus_6543#0 ATCCGGCTCACAACCACGCTCAAGGGGTGCACTGGCTGTTACGCGACTCTCAGCTGGGAT 360
consensus_6543#3 ------------------------------------------------------------
consensus_6543#1 AAACTAAACGTTTGACCATTCCACAACAGCTGTTCCGGAGTGGGAACGTCTGGCGGTACA 214
consensus_6543#2 ------------------------------------------------------------
consensus_6543#0 ACTTACTATCAATTCTGCCATCAGCCGGCGTGGGATACTGAGAATAAAGTGAAGACGCAA 420
consensus_6543#3 ------------------------------------------------------------
consensus_6543#1 TTTCCTGTTTCTCAACTAGTATTCTCAACCAACAGCAATGGCCAGTTGGGCAAACCGTCC 274
consensus_6543#2 --------------------------------------------------CCGCCCACGC 10
consensus_6543#0 CTTCGCTGTACCAATCTCGATGGCACACTTGTCCGTTGGGAGGGAACTGTAGTCGATATG 480
consensus_6543#3 ----GATCGCCGAGGCTCGATGGC-CACTG--TCGTTGGGAGGGAACTGTAGTCGATATG 53
consensus_6543#1 -TCCCATCGA-AAGTAACGGCGGTTCTTCG--TCATCGCGCAAGAAATGGAACCTTGAAG 330
consensus_6543#2 GTCCGATCGA-AAGTAACGGCGGTTCTTCA--TCATCGCGCAAGAAATGGAACCTTGAAG 67
* * ** ** * * * * * *** ** * * * *
consensus_6543#0 GCAATCTCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTT 540
consensus_6543#3 GCA-TATCGAGTCGTCGCAATCTTCGGGCCCAACTAATCGAAGGATATCTGCCAAAGTTT 112
consensus_6543#1 ATA-AAAAGTCTCTTCGCAACTTAAAGTACCATTTCGCCGAAGATGGCTGCTCGGAAGTG 389
consensus_6543#2 ATA-AAAAGTCTCTTCACAACTTAAAGTACCATTTCTCCGAAGATGGCTGTTCGGAAGTG 126
* * ** ** *** * * *** * ***** * * *
consensus_6543#0 TTGGCCG-ATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTG--TGGCAAC 597
consensus_6543#3 T-GGCCG-ATCGCATCACCTGCATCTACGGTGAACCAATTGAACCGGACTG--TGGCAAC 168
consensus_6543#1 CAGTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAAC 449
consensus_6543#2 CATTTTGCGCTGGCTAAGCAACTGCTGGAGGAAAACTCCGAAACCGATCCGGCTCACAAC 186
* * * * * * ** * ** * ***** * * * ****
consensus_6543#0 CTAAATGGATCGGTTGAG-GGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACG 656
consensus_6543#3 CTAAATGGATCGGTTGAG-GGTGAATGTGAAAATTTAAAACATTTCATGCAACGACAACG 227
consensus_6543#1 CACGCTCAAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATC 509
consensus_6543#2 CACGCTCGAGGGGTGCACTGGCTGTTACGCGCCGCTCAGCAAGGACACGAAGCGTCAATC 246
* * * *** * ** * * * * * ** * * ** ***
consensus_6543#0 CACGTGCCATCTCAATA--AATGGAATACCTATG--AGTAC-GAACTGAA-GATACGAAT 710
consensus_6543#3 CACGTGCCATCTCAATA--AATGGAATACCTATG--AGTAC-GAACTGAA-GATACGAAT 281
consensus_6543#1 GAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGAC 569
consensus_6543#2 GAACTGCTCAAAGAATGCTACGAAAATGGCCGTGGCATTACCGAGGCGAACGAGGAAGAC 306
* *** *** * *** * ** * *** ** *** ** *
consensus_6543#0 GTCCACTGGACTGGTGAC-CAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCG 769
consensus_6543#3 GTCCACTGGACTGTTGAC-CAAACCCGTCGAAGTTGTTCTGAAAGCACAGCACGTGTTCG 340
consensus_6543#1 GTTCGCACTATCCTGGCCATGAGCCCGGGGGAGC-GTTCTGCACGCCGGGCA-GCGCAAG 627
consensus_6543#2 GTTCGCACTATCCTGGCCATGAGCCCGGGGGAGC-GTTCTGCACGCCGGGCA-GCGCAAG 364
** * * * * * * **** * ** ****** * ** *** * * *
consensus_6543#0 GAAACTTTACTCAAAGTCTCAACTATTCTGACCGCGT-ATGGTTCGTCGGCGTGTTGCGC 828
consensus_6543#3 GAAACTTTACTCAAAGTCTCAACTATTCTGATCGCGT-ATGGTTCGTCGGCGTCTTGCGC 399
consensus_6543#1 AACTCTTTGCGA------------------------------------------------ 639
consensus_6543#2 AACTCTTTGCGAGCCTCTCGAATGGCGAGGAATACGTTACGGCAGCACAACTCGAAAAGC 424
* **** *
consensus_6543#0 GATTCGGTTCAATCCGGGATCGCGTCATCCGGAAATACCGATCAGCCACATTGGGACACA 888
consensus_6543#3 GATTCGGCTCAATCCGGGATCGCGTCATCC------------------------------ 429
consensus_6543#1 ------------------------------------------------------------
consensus_6543#2 GTATGCGAGAAATTTACAAGATGGACAAAAAGCGCCGACGCACCCAGCCGGATGGTGCCG 484
consensus_6543#0 GTTAGCAGTGGATTTAACTTGAACATGGGAGGACAGGCCGGAAGTTTCGGTGTGCATTCG 948
consensus_6543#3 ------------------------------------------------------------
consensus_6543#1 ------------------------------------------------------------
consensus_6543#2 AAGCAGAAGGAAGCATGGAACACAGCTTGGGTGGAGGTGGTGGATCCGATGGTGGACGAT 544
consensus_6543#0 ATGCGATTGGGACGCAAGAACCCGCTAGTCGAACTCCATTCAATCGGA 996
consensus_6543#3 ------------------------------------------------
consensus_6543#1 ------------------------------------------------
consensus_6543#2 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||