|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 837 fasta sequence
[CGACATGCTGCCTTGGTTGTAATTTCTCTCTGTTTTTTCTATCTCTCTTTTTAAACCGAATTTCGCGTACCTACGGCTGGGCTCTCATTGGCGCATTGTTTTCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTGTTAATTTCCTCTAAAACCGCTTGCCTTCTTGTTTTCGAACCTGAGCTGAAGATGGATGCAGTGAA------CAACCAAGGATACTGCTTC----CTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTAAAACCACGATATTAACACTGGCCACCGGTCAAACAT--ACACACACAAACACACTGAGTGCCTCCAAACAAAACAAAACCTACACCAACCGGGTAGCCGGGTGTGTGTGTGTGTTGCCATTACTCATATTGCGCTAATTCCACGCT-ATGAAAATTGATCCGCCAACCGGATGTGTGTGTGTGCGATCCCTTTCTCTCAATCTGCCACCCACTCACACATACACACACCGTCAAACCACACCGGTGGTGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGAGAGAGAGTATTTCGCCACCGGATGTATTTCGTTCCGGATTTGCCCCGGACGACCGCAAACCTCACACCTGTCCTCCGCCGTCCTTTTGTAGCTCACTAGGGCTACGATGGCAGGGAATGAGAAAGGCGAAAGCCAATGAATATGGATATCCTTCTGGCAAATGATTATAGATCAGAGATCAAATGACGTGCCACATAAACTAGTTGTGTGCACACGGGAGCCGCCATACAAATTCAAACGCTTCCACCGGACGCGTGGGCGGACGCGTGGGCGG]
[+] EMBL BX466698 [CGACATGCTGCCTTGGTTGTAATTTCTCTCTGTTTTTTCTATCTCTCTTTTTAAACCGAATTTCGCGTACCTACGGCTGGGCTCTCATTGGCGCATTGTTTTCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTGTTAATTTCCTCTAAAACCGCTTGCCTTCTTGTTTTCGAACCTGAGCTGAAGATGGATGCAGTGAA CAACCAAGGATACTGCTTC CTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTAAAACCACGATATTAACACTGGCCACCGGTCAAACAT ACACACACAAACACACTGAGTGCCTCCAAACAAAACAAAACCTACACCAACCGGGTAGCCGGGTGTGTGTGTGTGTTGCCATTACTCATATTGCGCTAATTCCACGCT ATGAAAATTGATCC ]
[-] EMBL BM579201 [ CCTGAGCTGAAGATAGATGCAGTGAACAAGCGCAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTAAAACCACGATATTAACACTGGGCACCGGTCAAACATAAACACACACAAACACACTGAGTGCCTCCAAACAAAACAAAACC ACACCAACCGGGTAGCCGGGTGTGTGTGTGTGTTGCCATTACTCATATTGCGCTAATTCCACGCTAATGAAAATTGATCCGCCAACCGGATGTGTGTGTGTGCGATCCCTTTCTCTCAATCTGCCACCCACTCACACATACACACACCGTCAAACCACACCGGTGGTGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGAGAGAGAGTATTTCGCCACCGGATGTATTTCGTTCCGGATTTGCCCCGGACGACCGCAAACCTCACACCTGTCCTCCGCCGTCCTTTTGTAGCTCACTAGGGCTACGATGGCAGGGAATGAGAAAGGCGAAAGCCAATGAATATGGATATCCTTCTGGCAAATGATTATAGATCAGAGATCAAATGACGTGCCACATAAACTAGTTGTGTGCACACGGGAGCCGCCATACAAATTCAAACGCTTCCACCGGACGCGTGGGCGGACGCGTGGGCGG]
consensusID : consensus_6555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[GCACACGGCACGACCCCCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACATTATTACACCTATTGATGACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATATGCGCACCATACACACGTGTCTCATTGTCAACCAGATTTGACCTCAACACGCTTGTTAAATTTCCTTTGAAACCGCTTGCCTTCTTGCCTTGGAACCTGTTCAAGATGGATGCAGTAAACAAGCGCAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTAAAACCACGATATTAACACTGGCCACCGGTCAAACATACACACACAAACACACTGAGTCCCTCCAAACAAAACAAAACCACACACCGTAGCCGGGTGTGTGTGTTGCCATTACTCATATTGCGCTAATTCCACGCTAATGAAAATTGATCCGCCAACCGGATGTGTGCATGTGTGCGATCCCTTTCTCTCAATCTGCCACCCACACACCCACACACACCGTCAAACCACACCGGTGGTGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGAGAGTATTTCGCCGCCGGATGTATTTCGTTCCGGATTTGCCCCGGACGGCCGCAAGCCTCACACCTGTCCCGG]
[-] EMBL BM650348 [GCACACGGCACGACCCCCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACATTATTACACCTATTGATGACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATATGCGCACCATACACACGTGTCTCATTGTCAACCAGATTTGACCTCAACACGCTTGTTAAATTTCCTTTGAAACCGCTTGCCTTCTTGCCTTGGAACCTGTTCAAGATGGATGCAGTAAACAAGCGCAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTAAAACCACGATATTAACACTGGCCACCGGTCAAACATACACACACAAACACACTGAGTCCCTCCAAACAAAACAAAACCACACACCGTAGCCGGGTGTGTGTGTTGCCATTACTCATATTGCGCTAATTCCACGCTAATGAAAATTGATCCGCCAACCGGATGTGTGCATGTGTGCGATCCCTTTCTCTCAATCTGCCACCCACACACCCACACACACCGTCAAACCACACCGGTGGTGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGAGAGTATTTCGCCGCCGGATGTATTTCGTTCCGGATTTGCCCCGGACGGCCGCAAGCCTCACACCTGTCCCGG]
consensusID : consensus_6555#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[GCAGAATCGGCACGTTGGAGTGAATGTGAGCGAAAGCCGGCTGTCGTGTGCACCGTCCGATAGTTACTTCTAATTTAAACCCCATTGATTATGATTAATTATTTAATTATGTAAATCCGACAAGGTGCGCTCACGGCCCGCGGTGTACGTGTAAGCCACCGCTTGCAGTGTGCAGTGTGGATAAGGAAAAGGTGTACCAAGGTGATGATGAGTGTATGCGAATACTAACCTTCCATCTGCACGAAACGGTCGTCAAGCTTCCTGGGCAAGTTGCGGTTGATTAGGTGTTAAGTTTTGGCATCACATTCAATTAACTGCCCCAGCCCCAGGCCACGTGAGAGCATGTCCTTGTGAAATACTGGCGAAAATTTGATCCTATTTGTGCTTCTAGTTGCCCTAAATACGCGGACACAAATTAGTGGCGCTTGTTTTCAGGTGTTTATTGTCACGAAATGCTCTTTCATTTCCATTNNNTCTCAGAGAATCCTCTTAGAGAAATACGCCGTTGTTTAAAGAACAGCAAATGCCGGCGTCCGTCCGGTATTTGATATGGTG]
[+] EMBL BX468112 [GCAGAATCGGCACGTTGGAGTGAATGTGAGCGAAAGCCGGCTGTCGTGTGCACCGTCCGATAGTTACTTCTAATTTAAACCCCATTGATTATGATTAATTATTTAATTATGTAAATCCGACAAGGTGCGCTCACGGCCCGCGGTGTACGTGTAAGCCACCGCTTGCAGTGTGCAGTGTGGATAAGGAAAAGGTGTACCAAGGTGATGATGAGTGTATGCGAATACTAACCTTCCATCTGCACGAAACGGTCGTCAAGCTTCCTGGGCAAGTTGCGGTTGATTAGGTGTTAAGTTTTGGCATCACATTCAATTAACTGCCCCAGCCCCAGGCCACGTGAGAGCATGTCCTTGTGAAATACTGGCGAAAATTTGATCCTATTTGTGCTTCTAGTTGCCCTAAATACGCGGACACAAATTAGTGGCGCTTGTTTTCAGGTGTTTATTGTCACGAAATGCTCTTTCATTTCCATTNNNTCTCAGAGAATCCTCTTAGAGAAATACGCCGTTGTTTAAAGAACAGCAAATGCCGGCGTCCGTCCGGTATTTGATATGGTG]
consensusID : consensus_6555#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence
[TTGGCTTACACGTACACCGTGGGCCGCGAGCGCACCTTGTCGGATTTACATAATTAAATAATTAATCATAATCAATGGGGTTTAAATTAGAAGTAACTATCGNGACGGTGCACACGGCACGACCCACCCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACTTTATTACACCTATTGATGACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATATGCGCACCGTGTGTAACTCCGCTGAGCTCCTTCTTCTCTTCTACCTGCCGCTTCTCATTGGCGCATTGTTTTCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTGTTAATTTCCTCTAAAACCGCTTGCCTTCTCCGTTTTCGAACCTGAGCTGAAGATGGATGCAGTGAACAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGCNCAAACCACGATATTAACACGGCCACCGGTCAAACATACACACAC]
[-] EMBL BX619474 [TTGGCTTACACGTACACCGTGGGCCGCGAGCGCACCTTGTCGGATTTACATAATTAAATAATTAATCATAATCAATGGGGTTTAAATTAGAAGTAACTATCGNGACGGTGCACACGGCACGACCCACCCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACTTTATTACACCTATTGATGACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATATGCGCACCGTGTGTAACTCCGCTGAGCTCCTTCTTCTCTTCTACCTGCCGCTTCTCATTGGCGCATTGTTTTCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTGTTAATTTCCTCTAAAACCGCTTGCCTTCTCCGTTTTCGAACCTGAGCTGAAGATGGATGCAGTGAACAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGCNCAAACCACGATATTAACACGGCCACCGGTCAAACATACACACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6555#0 ------------------------------------------------------------
consensus_6555#1 ------------------------------------------------------------
consensus_6555#3 TTGGCTTACACGTACACCGTGGGCCGCGAGCGCACCTTGTCGGATTTACATAATTAAATA 60
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 ------------------------------------------------------CGACAT 6
consensus_6555#1 -------------------------------------------------GCACACGGCAC 11
consensus_6555#3 ATTAATCATAATCAATGGGGTTTAAATTAGAAGTAACTATCGNGACGGTGCACACGGCAC 120
consensus_6555#2 --GCAGAATCGGCACGTTGGAGTGAATGTGAGCGAAAGCCGGCTGTCGTGTGCACCGTCC 58
*
consensus_6555#0 GCT--GC--CTTGGTTGTAATTTCTCTCTGTTTTTTCTATCTCTC----TTTTTAAACCG 58
consensus_6555#1 GAC--CC--CCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACATTATTACACCT 67
consensus_6555#3 GAC--CCACCCCCATCGCATTCGCTCACATTCACACCTCAATGCCAACTTTATTACACCT 178
consensus_6555#2 GATAGTTACTTCTAATTTAAACCCCATTGATTATGATTAATTATTTAATTATGTAAATCC 118
* * * * * * * ** * *
consensus_6555#0 AATTTCGCGTACCTACGGCTGG--GCTCTCATTGGCG-CATTGT---------------- 99
consensus_6555#1 ATTGATG-ACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATA----------- 115
consensus_6555#3 ATTGATG-ACACACAATATTGGCGGTTGTCGTCGGAGGTACTGGGCATATGCGCACCGTG 237
consensus_6555#2 GACAAGGTGCGCTCACGGCCCGCGGTGTACGTGTAAGCCACCGCTTGCA----------G 168
* * * * * * * * * *
consensus_6555#0 ----------------------------------------------------------TT 101
consensus_6555#1 ----------------------------------------------------------TG 117
consensus_6555#3 TGTAACTCCGCTGAGCTCCTTCTTCTCTTCTACCTGCCGCTTCTCATTGGCGCATTGTTT 297
consensus_6555#2 TGTGCAGTGTGGATAAGGAAAAGGTGTACCAAGGTGATGATGAGTGTATGCGAATACTAA 228
consensus_6555#0 TCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTG 161
consensus_6555#1 CGCACCATACACACGTGTCTCATTGTCAACCAGATTTGACCTCAA-------CACGCTTG 170
consensus_6555#3 TCCACGGTACACACGTGTCTCATTGTCAACCTGATTTGACCTCGATATCCTACATGCTTG 357
consensus_6555#2 CCTTCCATCTGCACGAAACG-GTCGTCAAGCTTCCTGGGCAAGTTGCGGTTGATTAGGTG 287
* * **** * * ***** * * * * **
consensus_6555#0 TTAA-TTTC--CTCTAAAACCGCTTGCCTTCTT-GTTTTCGAACCTGAGCTGAAGATGGA 217
consensus_6555#1 TTAAATTTC--CTTTGAAACCGCTTGCCTTCTT-GCCTTGGAACCT--GTTCAAGATGGA 225
consensus_6555#3 TTAA-TTTC--CTCTAAAACCGCTTGCCTTCTCCGTTTTCGAACCTGAGCTGAAGATGGA 414
consensus_6555#2 TTAAGTTTTGGCATCACATTCAATTAACTGCCCCAGCCCCAGGCCAC-GTGAGAGCATGT 346
**** *** * * * ** ** * ** * ** *
consensus_6555#0 TGCAGTGAACAA------CCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTC------- 264
consensus_6555#1 TGCAGTAAACAAGCGCAACCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTCTCTCTCT 285
consensus_6555#3 TGCAGTGAACAA------CCAAGGATACTGCTTCCTCTCTCTCTCTCTCTCTC------- 461
consensus_6555#2 CCTTGTGAAATA-----CTGGCGAAAATTTGATCCTATTTGTGCTTCTAGTTGCCCTAAA 401
** ** * * * * * **** * * * *** *
consensus_6555#0 -------------------------------------GCACAGAGGGAAGTA-AAACCAC 286
consensus_6555#1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCACAGAGGGAAGTA-AAACCAC 344
consensus_6555#3 -------------------------------------GCACAGAGGGAAGCNCAAACCAC 484
consensus_6555#2 TACGCGGACACAAATTAG-TGGCGCTTGTTTTCAGGTGTTTATTGTCACGAA-ATGCTCT 459
* * * * * * *
consensus_6555#0 GATATTAACACTGGCCACCGGTCAAACATACACACACAAACACACTGAGTGCCTCCAAAC 346
consensus_6555#1 GATATTAACACTGGCCACCGGTCAAACATACACACACAAACACACTGAGTCCCTCCAAAC 404
consensus_6555#3 GATATTAACAC-GGCCACCGGTCAAACATACACACAC----------------------- 520
consensus_6555#2 TTCATTTCCATTNNNTCTCAGAGAATCCT-CTTAGAGAAATACGCCGTTGTTTAAAGAAC 518
*** ** * * ** * * * * *
consensus_6555#0 AAAACAAAACCTACACCAACCGGGTAGCCGGGTGTGTGTGTGTGTTGCCATTACTCATAT 406
consensus_6555#1 AAAACAAAACC-ACAC--ACCG--TAGCCGGGTGTGTGTGT----TGCCATTACTCATAT 455
consensus_6555#3 ------------------------------------------------------------
consensus_6555#2 AGCA-AATGCCGGCGTCCGTCCGGTATTTGATATGGTG---------------------- 555
consensus_6555#0 TGCGCTAATTCCACGCTA-TGAAAATTGATCCGCCAACCGGATGTGTG--TGTGTGCGAT 463
consensus_6555#1 TGCGCTAATTCCACGCTAATGAAAATTGATCCGCCAACCGGATGTGTGCATGTGTGCGAT 515
consensus_6555#3 ------------------------------------------------------------
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 CCCTTTCTCTCAATCTGCCACCCACTCACACATACACACACCGTCAAACCACACCGGTGG 523
consensus_6555#1 CCCTTTCTCTCAATCTGCCACCCA--CACACCCACACACACCGTCAAACCACACCGGTGG 573
consensus_6555#3 ------------------------------------------------------------
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 TGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGAGAGAGAGTATTTCGCCACCG 583
consensus_6555#1 TGGCTTGACACCCAACGCGAACTAATTACAGAGAGAGAGA----GAGTATTTCGCCGCCG 629
consensus_6555#3 ------------------------------------------------------------
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 GATGTATTTCGTTCCGGATTTGCCCCGGACGACCGCAAACCTCACACCTGTCCTCCGCCG 643
consensus_6555#1 GATGTATTTCGTTCCGGATTTGCCCCGGACGGCCGCAAGCCTCACACCTGTCCCGG---- 685
consensus_6555#3 ------------------------------------------------------------
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 TCCTTTTGTAGCTCACTAGGGCTACGATGGCAGGGAATGAGAAAGGCGAAAGCCAATGAA 703
consensus_6555#1 ------------------------------------------------------------
consensus_6555#3 ------------------------------------------------------------
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 TATGGATATCCTTCTGGCAAATGATTATAGATCAGAGATCAAATGACGTGCCACATAAAC 763
consensus_6555#1 ------------------------------------------------------------
consensus_6555#3 ------------------------------------------------------------
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 TAGTTGTGTGCACACGGGAGCCGCCATACAAATTCAAACGCTTCCACCGGACGCGTGGGC 823
consensus_6555#1 ------------------------------------------------------------
consensus_6555#3 ------------------------------------------------------------
consensus_6555#2 ------------------------------------------------------------
consensus_6555#0 GGACGCGTGGGCGG 837
consensus_6555#1 --------------
consensus_6555#3 --------------
consensus_6555#2 --------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||