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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence
[CCCCGCGGTTATAATACTGTGTACACAATTAAGCAAACTATTGGACTGGATTTAAAATGGCCACAAAAGCAAGAATGACGGAATATAAAGAAGGAAGACAATTGAGTTACTGGATGAGGGTTTTTTTAATTTGTTGTTTACTTTTCCGTTGTCATTGGCTGTATTGTACGAAGGAGTTTTGTCCCTTATTGTAGGAAGTTTGATGAAGTTTATTGAACGGTAGTTGATAATGTGAAATTTGTCGTTAAACACTCTACACACACACACACGTAGTGCTAAACCTCAAAAAAGGTATGTGAGTTTCGTTTGAATTCAAATTACAAACAAATTATGAAACAAAAACAGAGAACNAATCAGCAAAAAAGAAAATCCAACTTTCATCAAGTGGATTAAGTGATATGATTTGTTTTGTTACACTACTACAGGCAAACAAGCTGTGAAGCGAATAGTGTTTTTTTTTGTTGCCTCAAACTGCATCTGAGTTTGTAACGAATTTAACGAAGTTTTTGTTCTGCTAATTTTGTCCCCATCGGAGAAGATGTAAAGTTATCTCAAACTCAATGGAAGGGCAGAGGAAAAAACACAAAACGAATAAAACACACACCATTTGTAACTAATAAAGACGGAGAACGAAATGAAGTGAATCACGGAACAGTGGAATACAATTTGATGCGAACANTTTGCATCATACTNNCTAATGGCANTACTATCACACACACAAACACATAAAGCGAAACGTAAACACAACACTAAACAAAACACACAACAAATGGTCAAATTACCAACCAACTGTTCTACACACACANATCACACCTAACTTGAAACAACNAANTTATTNGCTACCCATNCACAA]
[+] EMBL AL695358 [CCCCGCGGTTATAATACTGTGTACACAATTAAGCAAACTATTGGACTGGATTTAAAATGGCCACAAAAGCAAGAATGACGGAATATAAAGAAGGAAGACAATTGAGTTACTGGATGAGGGTTTTTTTAATTTGTTGTTTACTTTTCCGTTGTCATTGGCTGTATTGTACGAAGGAGTTTTGTCCCTTATTGTAGGAAGTTTGATGAAGTTTATTGAACGGTAGTTGATAATGTGAAATTTGTCGTTAAACACTCTACACACACACACACGTAGTGCTAAACCTCAAAAAAGGTATGTGAGTTTCGTTTGAATTCAAATTACAAACAAATTATGAAACAAAAACAGAGAACNAATCAGCAAAAAAGAAAATCCAACTTTCATCAAGTGGATTAAGTGATATGATTTGTTTTG ]
[+] EMBL AL934550 [ ggcccagGGAT AGGG TTTTTTAATTTGTTGTTTACTTTTCCGTTGTCATTGGCTGTATTGTACGAAGGAGTTTTGTCCCTTATTGTAGGAAGTTTGATGAAGTTTATTGAACGGTAGTTGATAATGTGAAATTTGTCGTTAAACACTCTACACACACACACACGTAGTGCTAAACCTCAAAAAAGGTATGTGAGTTT GTTTGAATT AAATTACAAACAAATTATGAAACAAAAA AGAGAAAAAATCAGCAAAAAAGAAAATCCAACTTTCATCAAGTGGATTAAGTGATATGATTTGTTTTGTTACACTACTACAGGCAAACAAGCTGTGAAGCGAATAGTGTTTTTTTTTGTTGCCTCAAACTGCATCTGAGTTTGTAACGAATTTAACGAAGTTTTTGTTCTGCTAATTTTGTCCCCATCGGAGAAGATGTAAAGTTATCTCAAACTCAATGGAAGGGCAGAGGAAAAAACACAAAACGAATAAAACACACACCATTTGTAACTAATAAAGACGGAGAACGAAATGAAGTGAATCACGGAACAGTGGAATACAATTTGATGCGAACANTTTGCATCATACTNNCTAATGGCANTACTATCACACACACAAACACATAAAGCGAAACGTAAACACAACACTAAACAAAACACACAACAAATGGTCAAATTACCAACCAACTGTTCTACACACACANATCACACCTAACTTGAAACAACNAANTTATTNGCTACCCATNCACAA]
consensusID : consensus_6561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[GTGCCGATTGTTGTTCTCGGTGGGGGACTGTGTTTGTGAACATATTAATCAAATCGAATAATGAGCAGAACGGTGATGAAAGACTCTCTGCACCACAATCGCACACATACAAACACACACACAGACATAGACACAACCGAATAAAAAAACCATAAGCATAAGTAGTAAAGCAAAGAAAAGGACTTGGAAGTAGAGGAAATCATCGTGCAACACGATCACTCTAATCACTAGAAGGAAGCATTATTTGGTAGTAGCAGCGACGTTTGGAAGGAGCAGTCATCGATGGTTGTTTTCCTTCTTTATTTTTTTTTACAAAATATTCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGATTGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAACACGCGAAAGCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAGAAAAAAAACGCAAACGAATAAAACACACACATTTGAAACCAACAAAA]
[+] EMBL BX622717 [GTGCCGATTGTTGTTCTCGGTGGGGGACTGTGTTTGTGAACATATTAATCAAATCGAATAATGAGCAGAACGGTGATGAAAGACTCTCTGCACCACAATCGCACACATACAAACACACACACAGACATAGACACAACCGAATAAAAAAACCATAAGCATAAGTAGTAAAGCAAAGAAAAGGACTTGGAAGTAGAGGAAATCATCGTGCAACACGATCACTCTAATCACTAGAAGGAAGCATTATTTGGTAGTAGCAGCGACGTTTGGAAGGAGCAGTCATCGATGGTTGTTTTCCTTCTTTATTTTTTTTTACAAAATATTCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGATTGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAACACGCGAAAGCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAGAAAAAAAACGCAAACGAATAAAACACACACATTTGAAACCAACAAAA]
consensusID : consensus_6561#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CCGAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAAACACGCGAAAGCTCCATTTTAACCGTGCGCTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAAAAGGAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACAAGAAAACGCTGCAGGACGTGTGATGTGTGAACACTTAAAGGAGACGAAAACGAACGAGAAAGGGGAAGCGGATAAACGTAATGGACGTGCATTTTGAAATGGATTTTTTGTAGAATTTTCGAAACTGAATTAATAAACCAATCACCAAATGAGCGGTGTAAAATCGGTCAATCGGTGAGGTAAATAATGAAATAGAACAGCAAACACACATACATACACACAAACACACAAACACGAGCAAAGAGAAGTGAAGGTAAAAGGAGCTAATACTGTGTAACACAATTAAGTAAACTATTGGACTGGATTTATAATGGCCACAAAAGCAAGAATA]
[+] EMBL BM578310 [CCGAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAAACACGCGAAAGCTCCATTTTAACCGTGCGCTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAAAAGGAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACAAGAAAACGCTGCAGGACGTGTGATGTGTGAACACTTAAAGGAGACGAAAACGAACGAGAAAGGGGAAGCGGATAAACGTAATGGACGTGCATTTTGAAATGGATTTTTTGTAGAATTTTCGAAACTGAATTAATAAACCAATCACCAAATGAGCGGTGTAAAATCGGTCAATCGGTGAGGTAAATAATGAAATAGAACAGCAAACACACATACATACACACAAACACACAAACACGAGCAAAGAGAAGTGAAGGTAAAAGGAGCTAATACTGTGTAACACAATTAAGTAAACTATTGGACTGGATTTATAATGGCCACAAAAGCAAGAATA]
consensusID : consensus_6561#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[TCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGATTGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAACACGCGAAAGCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAGAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACAAGAAAACGCTGCAGGACGTGTGATGTGTGAACACTTAAAGAAGACGATTGAGTGACTGGATGAGGGGTTT]
[+] EMBL BX605964 [TCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGATTGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAGCCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCGAACAGTGGTATTGAGAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAACACGCGAAAGCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAACAACAACAACAACAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAGAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACAAGAAAACGCTGCAGGACGTGTGATGTGTGAACACTTAAAGAAGACGATTGAGTGACTGGATGAGGGGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6561#1 GTGCCGATTGTTGTTCTCGGTGGGGGACTGTGTTTGTGAACATATTAATCAAATCGAATA 60
consensus_6561#3 ------------------------------------------------------------
consensus_6561#2 ------------------------------------------------------------
consensus_6561#0 ------------------------------------------------------------
consensus_6561#1 ATGAGCAGAACGGTGATGAAAGACTCTCTGCACCACAATCGCACACATACAAACACACAC 120
consensus_6561#3 ------------------------------------------------------------
consensus_6561#2 ------------------------------------------------------------
consensus_6561#0 ------------------------------------------------------------
consensus_6561#1 ACAGACATAGACACAACCGAATAAAAAAACCATAAGCATAAGTAGTAAAGCAAAGAAAAG 180
consensus_6561#3 ------------------------------------------------------------
consensus_6561#2 ------------------------------------------------------------
consensus_6561#0 ------------------------------------------------------------
consensus_6561#1 GACTTGGAAGTAGAGGAAATCATCGTGCAACACGATCACTCTAATCACTAGAAGGAAGCA 240
consensus_6561#3 ------------------------------------------------------------
consensus_6561#2 ------------------------------------------------------------
consensus_6561#0 ------------------------------------------------------------
consensus_6561#1 TTATTTGGTAGTAGCAGCGACGTTTGGAAGGAGCAGTCATCGATGGTTGTTTTCCTTCTT 300
consensus_6561#3 ------------------------------------------------------------
consensus_6561#2 ------------------------------------------------------------
consensus_6561#0 ------------------------------------------------------------
consensus_6561#1 TATTTTTTTTTACAAAATATTCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGAT 360
consensus_6561#3 --------------------TCTCTTATATGTTTTAGTAGTGCCCGATACAATTGGAGAT 40
consensus_6561#2 ------------------------------------------------------------
consensus_6561#0 -----------------------CCCCGCGGTTATAATACTGTGTACACAATTAAGCAAA 37
consensus_6561#1 TGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAG 420
consensus_6561#3 TGGTGAGGTTGGTTCTGGGGTTTTCACTTCTTTTTTTTACTACCCCCACTCAAAAAGAAG 100
consensus_6561#2 ----------------------------------------------------CCGAGAAG 8
consensus_6561#0 CTATTGGACTGGATTTAAAATGGCCACAAAAGCAAGAATGACGGAATATAAAGAAGGAAG 97
****
consensus_6561#1 CCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCG-----AACA 475
consensus_6561#3 CCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCG-----AACA 155
consensus_6561#2 CCACCCATTACTGTGAATGTGAACTGATTGAAGCGGCGCCGTACATGGGCG-----AACA 63
consensus_6561#0 ACAATTGAGTTACTGGATGAGGGTTTTTTTAATTTGTTGTTTACTTTTCCGTTGTCATTG 157
** ** *** * * ** ** * *** * ** *
consensus_6561#1 GTGGTATTGA--GAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAA-CACGCGAAA 532
consensus_6561#3 GTGGTATTGA--GAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAA---CACGCGAAA 210
consensus_6561#2 GTGGTATTGA--GAAAGAGGAGGAGTATTTGAAATACAAAAAGAAAAAAAACACGCGAAA 121
consensus_6561#0 GCTGTATTGTACGAAGGAGTTTTGTCCCTTATTGTAGGAAGTTTGATGAAGTTTATTGAA 217
* ****** *** *** ** ** ** * **
consensus_6561#1 GCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAA 592
consensus_6561#3 GCTCCATTTTAACCGTGTGCTTTTTCTCTGCACGGCAAATGTACATATTAATGATAGCAA 270
consensus_6561#2 GCTCCATTTTAACCGTGCGCTTTT-CTCTGCACGGCAAATGTACATATTAATGATAGCAA 180
consensus_6561#0 CGGTAGTTGATAATGTGAAATTTGTCGTTAAACACTCTACACACACACACACG-TAGTGC 276
** * *** *** * * ** * *** * * * ***
consensus_6561#1 CAA-CAACAACAACAAAA--CAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTA- 648
consensus_6561#3 CAA-CAACAACAACAAAA--CAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTA- 326
consensus_6561#2 CAA-CAACAACAACAAAAAACAAACATTTGGTAAAGATAAGGATAGGAGGTGAGCATTAA 239
consensus_6561#0 TAAACCTCAAAAAAGGTATGTGAGT-TTCGTTTGAATTCAAATTACAAACAAATTATGAA 335
** * *** ** * * ** * * * * * ** * * ** *
consensus_6561#1 ---GAAAAAAAACGCAAACGAATAAAACACACAC-ATTTGAAACCAACAAA-A------- 696
consensus_6561#3 ---GAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACA-AGAAAACG 382
consensus_6561#2 AAGGAAAGAGAAAGCGGAGGAACGAAATGCACAGGAACAGGAGGGAGCACA-AGAAAACG 298
consensus_6561#0 ACAAAAACAGAGAACNAATCAGCAAAAAAGAAAA-TCCAACTTTCATCAAGTGGATTAAG 394
*** * * * * * *** * * * **
consensus_6561#1 ------------------------------------------------------------
consensus_6561#3 CTGCAGGACGTGTGATGTGTGAACACTTAAAGAAGACGATTGAGTGACTGGATGAGGGGT 442
consensus_6561#2 CTGCAGGACGTGTGATGTGTGAACACTTAAAGGAGACGAAAACGAACGAGAAAGGGGAAG 358
consensus_6561#0 TGATATGATTTGTTTTGTTACACTACTACAGGCAAACAAGCTGTGAAGCGAATAGTGTTT 454
consensus_6561#1 ------------------------------------------------------------
consensus_6561#3 TT---------------------------------------------------------- 444
consensus_6561#2 CGGATAAACGT----AATGGACGTGCATTTTGAAATGGATTTTTTGTAGAATTTTCGAAA 414
consensus_6561#0 TTTTTTGTTGCCTCAAACTGCATCTGAGTTTGTAACGAATTTAACGAAGTTTTTGTTCTG 514
consensus_6561#1 ------------------------------------------------------------
consensus_6561#3 ------------------------------------------------------------
consensus_6561#2 CTGAATTAATAAACCAATCACCAAATGAGCGGTGTAAAATCGGTCAATCGGTGAGGTAAA 474
consensus_6561#0 CTAATTTTGTCCCCATCGGAGAAGATGTAAAGT-TATCTCAAACTCAATGGAAGGGCAGA 573
consensus_6561#1 ------------------------------------------------------------
consensus_6561#3 ------------------------------------------------------------
consensus_6561#2 TAATGAAATAGAACAGCAAACACACATACATACACACAAACACACAAACACGAGCAAAGA 534
consensus_6561#0 GGAAAAAACACAAAACGAATAAAACACACACCATTTGTAACTAATAAAGACGGAGAACGA 633
consensus_6561#1 ------------------------------------------------------------
consensus_6561#3 ------------------------------------------------------------
consensus_6561#2 GAAGTGAAGGTAAAAGGAGCT----AATACTGTGTAACACAATTAAGTAAACTATTGGAC 590
consensus_6561#0 AATGAAGTGAATCACGGAACAGTGGAATACAATTTGATGCGAACANTTTGCATCATACTN 693
consensus_6561#1 ------------------------------------------------------------
consensus_6561#3 ------------------------------------------------------------
consensus_6561#2 TGGATTTATAATGGCCACAAAAGCAAGAATA----------------------------- 621
consensus_6561#0 NCTAATGGCANTACTATCACACACACAAACACATAAAGCGAAACGTAAACACAACACTAA 753
consensus_6561#1 ------------------------------------------------------------
consensus_6561#3 ------------------------------------------------------------
consensus_6561#2 ------------------------------------------------------------
consensus_6561#0 ACAAAACACACAACAAATGGTCAAATTACCAACCAACTGTTCTACACACACANATCACAC 813
consensus_6561#1 ----------------------------------------
consensus_6561#3 ----------------------------------------
consensus_6561#2 ----------------------------------------
consensus_6561#0 CTAACTTGAAACAACNAANTTATTNGCTACCCATNCACAA 853
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||