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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 923 fasta sequence
[TCTTTATTTTAGTGCATTACGGGTTCGACATCCAAACACGCAGCGCAGAATGCTCCAGTTCGTACGTGCGCGAGAGTGTTTTCGATGCAAGAAACGGTACGAATGTAATGTACGCAAGCCAGCTAGCAGTTTAAGGGGGTTTTGTTGATAAGTGTCTTTATACGTTTTAATTGTTTGTTTTTTTAATTTGCCCGACCTTTTAAGCAGATGACAGAATTAGCGTTATAAGAATGCTGTTTAGTTTCTTCGTACCTTGTTAAGAATATCCGTGTGCGCCGATAAGAAGATAGTTGTATCCGTTTAAATTTTAGCACGATGGCGCAGCGTTGGACCGACTAAACCGATGATCCGGCATCGCTTTACAGGATGATAAGGGGTTTGTTTATAAATACTGCTGCAAAATGCGCCAATTGATGCACTTCTTTTTTGTTATTGTGAAGTAAAGGCTGCAGTACCTGTGTGT-GGGCTACTATTTGTCCCGCGAAGAACGAATCAGCAACCAAACACATGCAAAGGGTTTCAAAATAATGTAGGTTGTTTGGCCTAATTTTGGAGCAGTTAGTACAGCCACACACATTGCTCTCGAGTTAACTGTGCCCCTCTGTGCGTTGACGGCAACCAGCAGCAGCACACGGCGGTTGTGGAAAC-AAAAAAGGTCCTAGCAGAGCGAGTGCAATTTATATGTTCCCCCGAAAGAGTCAGGCCTAGTAGATCACAATCAAACGGGGGATGGATACGATTTTTGAACGTGATAAGATTATTCTGATGCCATCAAACNAACGTGCAACTATGAGAAGAATATAGAGTTAAGACAAAAGAAAACGCAAGATGCAATTTATTGTTTACAGAAGAAGTGGCGGTGTTATGAAAACTGCTTCCACACGCGCGCGCACCCGTTTGGAGTTACGATTTTCGTGTACTGG]
[+] EMBL BX628442 [TCTTTATTTTAGTGCATTACGGGTTCGACATCCAAACACGCAGCGCAGAATGCTCCAGTTCGTACGTGCGCGAGAGTGTTTTCGATGCAAGAAACGGTACGAATGTAATGTACGCAAGCCAGCTAGCAGTTTAAGGGGGTTTTGTTGATAAGTGTCTTTATACGTTTTAATTGTTTGTTTTTTTAATTTGCCCGACCTTTTAAGCAGATGACAGAATTAGCGTTATAAGAATGCTGTTTAGTTTCTTCGTACCTTGTTAAGAATATCCGTGTGCGCCGATAAGAAGATAGTTGTATCCGTTTAAATTTTAGCACGATGGCGCAGCGTTGGACCGACTAAACCGATGATCCGGCATCGCTTTACAGGATGATAAGGGGTTTGTTTATAAATACTGCTGCAAAATGCGCCAATTGATGCACTTCTTTTTTGTTATTGTGAAGTAAAGGCTGCAGTACCTGTGTGT GGGCTACTATTTGTCCC ]
[+] EMBL BX623467 [ AATGCTCCAGTTCGTACGTGCGCGAGAGTGTTTTCGATGCAAGAAACGGTACGAATGTAATGTACGCAAGCCAGCTAGCAGTTTAAGGGGGTTTTGTTGATAAGTGTCTTTATACGTTTTAATTGTTTGTTTTTTTAATTTGCCCGACCTTTTAAGCAGATGACAGAATTAGCGTTATAAGAATGCTGTTTAGTTTCTTCGTACCTTGTTAAGAATATCCGTGTGCGCCGATAAGAAGATAGTTGTATCCGTTTAAATTTTAGCACGATGGCGCAGCGTTGGACCGACTAAACCGATGATCCGGCATCGCTTTACAGGATGATAAGGGGTTTGTTTATAAATACTGCTGCAAAATGCGCCAATTGATGCACTTCTTTTTTGTTATTGTGAAGTAAAGGCTGCAGTACCTGTGTGT GGGCTACTATTTGTCCCGCGAAGAACGAATCAGCAACCAAACACATGCAAAGGGTTTCAAAATAATGTAGGTTGTTTGGCCTAATTTTGGAGCAGTTAGTACAGCCACACACATTGCTCTCGAGTTAACTGTGCCCCTCTGTGCGTTGACGGCAACCAGCAGCAGCACACGGCGGTTGTGGAAAC AAAAAAGGTCCTAGCAGAGCGAGTGCAATTTATATGTTCCCCCGAAAGAGTCAGGCCTAGTAGATCACAATCAAACGGGGGATGGATACGATTTTTGAACGTGATAAGATTATTCTGATGCCATCAAACNAACGTGCAACTATGAGAAGAA ]
[+] EMBL BM641406 [ ccgTGCTGTTCAGTTTCTTCGTACCTTGTTAAGAATATCCGTGTGCGCCGATAAGAAGATAGTTGTATCCGTTTAAATTTTAGCACGATGGCGCAGCGTTGAACCGACTAAACCGATGATCCGGCATCGCTTTACAGTATGATTAGGGGTTTGTTTTTAAATACTGCTGCATAATGCGCCAATTGATGCACTT TTTTTTGTTATTGTGAAGAAAAGGCTGCAGTACCTGTGTGTGGGGCTACTATTTGTCCCGCGAAGAACGAATCAGC AACACATGCAAAGGGTTTCAAAATAATGTAGGTTGTTTGGCCTAATTTTGGAGCAGTTAGTACAGCCACACACATTGCTCTCGAGTTAACTGTGCCCCTCTGTGCGTTGACGGCAACCAGCAGCAGCACACGGCGGTTGTGCAAACAAAAAAAGGTCCTAGCAGAGCGAGTGCAATTTATATGTTCCCCCGAAAGAGTCAGGCCTAGTAGATCACAATCAAAC GGGATGGATACGATTTTCGAACGTGATAAGATTATTCTGATGCCATCAAACAAACGTGCAACTATGAAAAGAGTATAGAGTTAAGACAAAAGAAAACGCAAGATGCAATTTATTGTTTACAGAAGAAGTGGCGGTGTTATGAAAACTGCTTCCACACGCGCGCGCACCCGTTTGGAGTTACGATTTTCGTGTACTGG]
consensusID : consensus_6571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence
[GTTGATAAGTGTCTTTAAACGTTTTAATTGTTTGTTTTTTTAATTTGCCCGACCTTTTAAGCAGATGACAGATTTAGCGTTATAAGAATGCTGTTTAGTTTCTTCGTACCTTGTTAAGAATATCCGTGTGCTCCGGTATGGAAAGCGAGCATAAGAAGATAGTTGTATCCGTTTACATTTTAGCACGACTAAACCGATGATCCGGCATCGCTTTACAGTATGATTAGGGGTTTGTTTTTAAATACTGCTGCATAATGCGCCAATTGATGCACTTTTTTTTGTTATTGTGAAGAAAAGGCTGCAGTACCTGTGTGTGGGGCTACTATTTGTCCCGCGAAGAACGAATCAGTAACCAAACACATGCAAAGGGTTTCAAAATAATGTAGGTTGTTTGGCCTAATTTTGGAGCAGTTAGTACAGCCACACACATTGCTCTCGAGTTAACTGTGCCCCTGTGCGTTGACGGCAACCTGCAGCAGCACACGGCGGTTGTGCAAACAAAAAAAGGTCCTAGCAGAGCGAGTGCAATTTATATGTTCCCCCGAAAGAGTCAGGCCTAGTAGATCACAATCAAATGGGATGGATACGATTTTTGAACGTGATAAGATTATTCTGATGCCATCAAACAAACGTGCAACTATGAGAAGAGTATAGAGTTAAGACAAAAGAAAACGCAAGATGCAATTTATTGTTTACGCAGAGAGTGGCGGTGCATGAAAACTGCTTCCACACGCGCGTGCACCCGTTTGGAGCTACGATTTTCGTGTACTGTAAGTGTGGTGCAACNAATTCTGCTCT]
[+] EMBL BX622225 [GTTGATAAGTGTCTTTAAACGTTTTAATTGTTTGTTTTTTTAATTTGCCCGACCTTTTAAGCAGATGACAGATTTAGCGTTATAAGAATGCTGTTTAGTTTCTTCGTACCTTGTTAAGAATATCCGTGTGCTCCGGTATGGAAAGCGAGCATAAGAAGATAGTTGTATCCGTTTACATTTTAGCACGACTAAACCGATGATCCGGCATCGCTTTACAGTATGATTAGGGGTTTGTTTTTAAATACTGCTGCATAATGCGCCAATTGATGCACTTTTTTTTGTTATTGTGAAGAAAAGGCTGCAGTACCTGTGTGTGGGGCTACTATTTGTCCCGCGAAGAACGAATCAGTAACCAAACACATGCAAAGGGTTTCAAAATAATGTAGGTTGTTTGGCCTAATTTTGGAGCAGTTAGTACAGCCACACACATTGCTCTCGAGTTAACTGTGCCCCTGTGCGTTGACGGCAACCTGCAGCAGCACACGGCGGTTGTGCAAACAAAAAAAGGTCCTAGCAGAGCGAGTGCAATTTATATGTTCCCCCGAAAGAGTCAGGCCTAGTAGATCACAATCAAATGGGATGGATACGATTTTTGAACGTGATAAGATTATTCTGATGCCATCAAACAAACGTGCAACTATGAGAAGAGTATAGAGTTAAGACAAAAGAAAACGCAAGATGCAATTTATTGTTTACGCAGAGAGTGGCGGTGCATGAAAACTGCTTCCACACGCGCGTGCACCCGTTTGGAGCTACGATTTTCGTGTACTGTAAGTGTGGTGCAACNAATTCTGCTCT]
consensusID : consensus_6571#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence
[TGAAGGTTTAGTCTTTATTTTAAGGTTGGCAATTACCGGGGTTCGGGCATCCAAAAACAACGGCAGCACAGAAATGCTCCAGGTTCCGGTACGGTGCGCGAGAGGTGTTTTCCGAATGGCAAAGAAACGGTACGGTAAATGTAATGTACGCAAGCCAGCTAGCAGTTTAAGGGGGTTTGTTGATAAGTGTCTTTATACGTTTTATGTTGTTTTTTATTGCCCGACTTTTAAGCAGATGACAGATTAGCGTTATAAGAATGCTGTTAGTTTCTTCGTACCTTGTTAAGAATATCCGTGTGCGCTGGTATGGAAAGCGAGCATAAAAGATAGTTATATCCGTTA]
[+] EMBL AL931011 [TGAAGGTTTAGTCTTTATTTTAAGGTTGGCAATTACCGGGGTTCGGGCATCCAAAAACAACGGCAGCACAGAAATGCTCCAGGTTCCGGTACGGTGCGCGAGAGGTGTTTTCCGAATGGCAAAGAAACGGTACGGTAAATGTAATGTACGCAAGCCAGCTAGCAGTTTAAGGGGGTTTGTTGATAAGTGTCTTTATACGTTTTATGTTGTTTTTTATTGCCCGACTTTTAAGCAGATGACAGATTAGCGTTATAAGAATGCTGTTAGTTTCTTCGTACCTTGTTAAGAATATCCGTGTGCGCTGGTATGGAAAGCGAGCATAAAAGATAGTTATATCCGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6571#0 TCTTTATTTTAGTGCATTACGGGTTCGACATCCAAACACGCAGCGCAGAATGCTCCAGTT 60
consensus_6571#1 ------------------------------------------------------------
consensus_6571#2 ------------------------------------------------------------
consensus_6571#0 CGTACGTGCGCGAGAGTGTTTTCGATGCAAGAAACGGTACGAATGTAATGTACGCAAGCC 120
consensus_6571#1 ------------------------------------------------------------
consensus_6571#2 ------------------------------------------------------------
consensus_6571#0 AGCTAGCAGTTTAAGGGGGTTTTGTTGATAAGTGTCTTTATACGTTTTAATTGTTTGTTT 180
consensus_6571#1 -----------------------GTTGATAAGTGTCTTTAAACGTTTTAATTGTTTGTTT 37
consensus_6571#2 ------------------------------------------------------------
consensus_6571#0 TTTTAATTTGCCCGACCTTTTAAGCAGATGACAGAATTAGCGTTATAAGAATGCTGTTTA 240
consensus_6571#1 TTTTAATTTGCCCGACCTTTTAAGCAGATGACAGATTTAGCGTTATAAGAATGCTGTTTA 97
consensus_6571#2 ------------------------------------------------------------
consensus_6571#0 GTTTCTTCGTACCTTGTTAAGAATATCCGTGTGCGCCGATAAGAAGATAGTTGTATCCGT 300
consensus_6571#1 GTTTCTTCGTACCTTGTTAAGAATATCCGTGTGCTCCGGTATGGAAAGCGA-GCATAAGA 156
consensus_6571#2 ---------------------------------------------------------TGA 3
*
consensus_6571#0 TTAAATTTTAGCACGATGGCGCAGCGTTGGACCGACTAAACCGATGATCCGGCATCGCTT 360
consensus_6571#1 AGATAGTTGTATCCGTTTACATT---TTAGCACGACTAAACCGATGATCCGGCATCGCTT 213
consensus_6571#2 AGGT-TTAGTCTTTATTTTAAGG---TTGGCA--ATT--ACCGGGGTTCGGGCATCCAAA 55
* * ** * * * **** * ** ******
consensus_6571#0 TACAGGATGATAAGGGGTTTGTTTATAAATACTGCTGCAAAATGCGCCAATTGATGCACT 420
consensus_6571#1 TACAGTATGATTAGGGGTTTGTTTTTAAATACTGCTGCATAATGCGCCAATTGATGCACT 273
consensus_6571#2 AACAACGGCAGCACAGAAATGCTCC---AGGTTCCGGTACGGTGCGCGA---GAGGTG-- 107
*** * * * ** * * * * * * ***** * ** *
consensus_6571#0 TCTTTTTTGTTATTGTGAAGTAAAGGCTGCAGTACCTGTG-TGTGGG-CTACTATTTGTC 478
consensus_6571#1 T-TTTTTTGTTATTGTGAAGAAAAGGCTGCAGTACCTGTG-TGTGGGGCTACTATTTGTC 331
consensus_6571#2 ---TTTTCCGAATGGCAAAGAAACGG-TACGGTAAATGTAATGTACGCAAGCCAGCTAGC 163
**** ** * *** ** ** * * *** *** *** * * * * *
consensus_6571#0 CCGCGAAGAACGAATCAGCAACCAAACACATGCAAAGGGTTTCAAAATAATGTAGGTTGT 538
consensus_6571#1 CCGCGAAGAACGAATCAGTAACCAAACACATGCAAAGGGTTTCAAAATAATGTAGGTTGT 391
consensus_6571#2 AGTTTAAGG--GGGTTTGTTGATAAGTGTCTTTATACGTTTT----ATGTTGTTTTTTAT 217
*** * * * ** * * * * *** ** *** ** *
consensus_6571#0 TTGGCCTAATTTTGGAGCAGTTAGTACAGCCACACACATTGCTCTCGAGTTAACTGTGCC 598
consensus_6571#1 TTGGCCTAATTTTGGAGCAGTTAGTACAGCCACACACATTGCTCTCGAGTTAACTGTGCC 451
consensus_6571#2 T--GCCCGACTTTTAAGCAGATG--ACAG--ATTAGCGTTATAAGAATGCTGTTAGTTTC 271
* *** * *** ***** * **** * * ** * * ** *
consensus_6571#0 CCTCTGTGCGTTGACGGCAACCAGCAGCAGCACACGGCGGTTGTGGAAACAAAAAA-GGT 657
consensus_6571#1 CCT--GTGCGTTGACGGCAACCTGCAGCAGCACACGGCGGTTGTGCAAACAAAAAAAGGT 509
consensus_6571#2 TTC--GTACCTTGTTAAGAATATCCGTGTGCGCTGGTATGGAAAGCGAGCATAAAAGATA 329
** * *** ** * ** * * * * * ** ****
consensus_6571#0 CCTAGCAGAGCGAGTGCAATTTATATGTTCCCCCGAAAGAGTCAGGCCTAGTAGATCACA 717
consensus_6571#1 CCTAGCAGAGCGAGTGCAATTTATATGTTCCCCCGAAAGAGTCAGGCCTAGTAGATCACA 569
consensus_6571#2 GTTATATCCGTTA----------------------------------------------- 342
** * *
consensus_6571#0 ATCAAACGGGGGATGGATACGATTTTTGAACGTGATAAGATTATTCTGATGCCATCAAAC 777
consensus_6571#1 ATCAAATGGG--ATGGATACGATTTTTGAACGTGATAAGATTATTCTGATGCCATCAAAC 627
consensus_6571#2 ------------------------------------------------------------
consensus_6571#0 NAACGTGCAACTATGAGAAGAATATAGAGTTAAGACAAAAGAAAACGCAAGATGCAATTT 837
consensus_6571#1 AAACGTGCAACTATGAGAAGAGTATAGAGTTAAGACAAAAGAAAACGCAAGATGCAATTT 687
consensus_6571#2 ------------------------------------------------------------
consensus_6571#0 ATTGTTTACAGAAGAAGTGGCGGTGTTATGAAAACTGCTTCCACACGCGCGCGCACCCGT 897
consensus_6571#1 ATTGTTTACGCAGAGAGTGGCGGTGC-ATGAAAACTGCTTCCACACGCGCGTGCACCCGT 746
consensus_6571#2 ------------------------------------------------------------
consensus_6571#0 TTGGAGTTACGATTTTCGTGTACTGG-------------------------- 923
consensus_6571#1 TTGGAGCTACGATTTTCGTGTACTGTAAGTGTGGTGCAACNAATTCTGCTCT 798
consensus_6571#2 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||