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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 861 fasta sequence
[CCGCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGTAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTGTGTGAGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTGCTTCCGAGCCATTTCTTCGCTGGAAGAGGCCCGTATTCCGTTCTTGTGGGCTTCTTTGTTTAGGGTGTGCAGAGCAGAAGGAGCGCGAAAGAGAAGGAGCGTTGGTGTGCGAAACGAGAGCGAGCGAGCGAGAGCGAACGCGCAGACACACGCACACCGCAGGAGAGCAAGAGCACGAGCGAGAGAAAAAGGAAGAAGAAGAAGAAGAAGAGTAGAAAAACAACATCAACAGCAGCCAACGACCGCGCTTGAACCCATTGGACAAGGTTCTAGAGT]
[+] EMBL BM623472 [CCGCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGTAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTGTGTGAGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAA ]
[+] EMBL BM650329 [ ccgAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTGTGTGAGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTGCTTCCGAGCCATTTCTTCGCTGGAAGAGGCCCGTATTCCGTTCTTGTGGGCTTCTTTGTTTAGGGTGTGCAGAGCAGAAGGAGCGCGAAAGAGAAGGAGCGTTGGTGTGCGAAACGAGAGCGAGCGAGCGAGAGCGAACGCGCAGACACACGCACACCGCAGGAGAGCAAGAGCACGAGCGAGAGAAAAAGGAAGAAGAAGAAGAAGAAGAGTAGAAAAACAACATCAACAGCAGCCAACGACCGCGCTTGAACCCATTGGACAAGGTTCTAGAGT]
consensusID : consensus_6577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence
[CCGCCCACGCGTCCGCACAGCGGACGGACGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAACGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAACAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAATGTGTGGGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTGTTGCTCTGCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCAAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCTGGAAGAAGCCCGTATTCCGTTCTTGTGGGCTTCTT]
[+] EMBL BM648862 [CCGCCCACGCGTCCGCACAGCGGACGGACGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAACGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAACAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAATGTGTGGGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTGTTGCTCTGCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCAAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCT ]
[+] EMBL BM641494 [ ccgCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAGTGTGTGGGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTGTTGCTCTGCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCTGGAAGAAGCCCGTATTCCGTTCTTGTGGGCTTCTT]
consensusID : consensus_6577#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAGTGTGTGGGGGTAGTGTGGGCAGGGGTGG]
[+] EMBL BM581026 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAGTGTGTGGGGGTAGTGTGGGCAGGGGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6577#0 -------------------------CCGCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCG 35
consensus_6577#1 CCGCCCACGCGTCCGCACAGCGGACGGACGTGCGTGTGCGGTACGTGGTCCGTGTGTTCG 60
consensus_6577#2 ------------------------------------------------------------
consensus_6577#0 CTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGTAACAGTGAAGGAGGTCGT 95
consensus_6577#1 CTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGT 120
consensus_6577#2 --------------------------------------------CCGCCCACGCGTCCGC 16
* * * * * **
consensus_6577#0 GCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAA 155
consensus_6577#1 GCAAAGAAGCTGAAACGATCCAACGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAA 180
consensus_6577#2 CCACGCGTCCGGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAA 76
** * *********** *************************************
consensus_6577#0 AGCGG--TGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTG 213
consensus_6577#1 AGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTG 240
consensus_6577#2 AGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTG 136
***** *****************************************************
consensus_6577#0 CACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTG 273
consensus_6577#1 CACTGCGACGAACAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTG 300
consensus_6577#2 CACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTG 196
************ ***********************************************
consensus_6577#0 ATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGAT 333
consensus_6577#1 ATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGAT 360
consensus_6577#2 ATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGAT 256
***************************************** *********** ** ***
consensus_6577#0 TAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTC 393
consensus_6577#1 TAGCGAAAATCATTGGTGCGATAACGCCCCGTG----TGTGTGTGCGTCTGCAAAGTGTC 416
consensus_6577#2 TAGCGAAAATCATTGGTGCGATAACGCCCCGTG----TGTGTGTGCGTCTGCAAAGTGTC 312
********************************* ***********************
consensus_6577#0 CAGCGAAGT---GTGTGAGGGTAGTGTGG-CAGGGGTGGTATCGTGGGCGGTGTATGTGC 449
consensus_6577#1 CAGCGAAGTAATGTGTGGGGGTAGTGTGG-CAGGGGTGGTATCGTGGGCGGTGTATGTGC 475
consensus_6577#2 CAGCGAAGTAGTGTGTGGGGGTAGTGTGGGCAGGGGTGG--------------------- 351
********* ***** *********** *********
consensus_6577#0 GTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAG 509
consensus_6577#1 GTTTGT--------------GTTGCTCTG--------------------CAACACAGAAG 501
consensus_6577#2 ------------------------------------------------------------
consensus_6577#0 GTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATA 569
consensus_6577#1 GTGAGCAGAGTTGAATGAAAAGTGCATCAAATCAGTGCAGAAAAGTCCGCTCGGTGAATA 561
consensus_6577#2 ------------------------------------------------------------
consensus_6577#0 TGTGAAGTGCGTTTTGCTTCCGAGCCATTTCTTCGCTGGAAGAGGCCCGTATTCCGTTCT 629
consensus_6577#1 TGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCTGGAAGAAGCCCGTATTCCGTTCT 621
consensus_6577#2 ------------------------------------------------------------
consensus_6577#0 TGTGGGCTTCTTTGTTTAGGGTGTGCAGAGCAGAAGGAGCGCGAAAGAGAAGGAGCGTTG 689
consensus_6577#1 TGTGGGCTTCTT------------------------------------------------ 633
consensus_6577#2 ------------------------------------------------------------
consensus_6577#0 GTGTGCGAAACGAGAGCGAGCGAGCGAGAGCGAACGCGCAGACACACGCACACCGCAGGA 749
consensus_6577#1 ------------------------------------------------------------
consensus_6577#2 ------------------------------------------------------------
consensus_6577#0 GAGCAAGAGCACGAGCGAGAGAAAAAGGAAGAAGAAGAAGAAGAAGAGTAGAAAAACAAC 809
consensus_6577#1 ------------------------------------------------------------
consensus_6577#2 ------------------------------------------------------------
consensus_6577#0 ATCAACAGCAGCCAACGACCGCGCTTGAACCCATTGGACAAGGTTCTAGAGT 861
consensus_6577#1 ----------------------------------------------------
consensus_6577#2 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||