cluster # 6582

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6582 cluster # 6582 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6582#0 length = 1359 sequences # 3

consensus_6582#1 length = 324 sequences # 1
consensus_6582#2 length = 281 sequences # 1

consensusID : consensus_6582#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1359
fasta sequence

                              [TTTTTTATGTTTTGCGCTGCCGGCACGAT-GAAGGAACGAGTTTTAACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAGAGTCGATCCGCCTCGACGGTCGAACGCTGGATGATTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGTACGCATCACCTGCGAGGTGGTGGAACCGAA-GCGATCCGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGAAGGCGGCACCACACTTCGACGGGGGCCGCCAATCGGACGAGTGTGTACAGTTGAACCGTATCCTGGAGCGGGCGCTGAAGGACTCGAACTGTGTCGATCTAGAATCGCTTTTTTGGTGTCGGAGGAAAAGGTGTGGAAGCTGCGCGTAGACGTGACGGTGCTGAACCACGAAGGCAACGCCCAGTGGATTGCTGCTCCATTGCTGCCCTGACCGCGCTGGCACACTTCAAGCGGCCGGACATCACGGTCGACGGCGAGGACGTGATTGTGCACACGATCGAAGAGAAAGATCCGCTGAAAGTGACTCTCTTCCACTATCCGCTGTGCGTGAGCTACGCCATCTTCAACCAGGGCAAGATCGCGATCGCCGATCCCACCTACCTGGAGGAGCGTGTGGCCGAGGCACGGATGGTGTTCGGGCTCAACTCGTACGGCGAGCTGTGTGGGTTGCATCTCGGCGGCACCACGCTGACCAGTGCCGAGCTGCTGCTGCGCACCTCGGCAAAGGCGAGCAAGCGGGCCCGGCTGGTGGTGGAACGCATCAAAGCCGCCATTCAGAAAGATGCCGAGGATCGTGAAAAGGGCCGTCCGGTCGGGGTTTAGCGAGGGCATTGAACGGAACGAGACGACGGTACACGCGCAGGACAGAATGCAGGTGCGGTTGAAACGCTTCAAGCTTCAGATTGAGGGCCAAGAGCGGACTGATCACGATGACGGACAGGATGAGGAAGATGAAGAAGAGGTGGCGCAGGAGGAGATGGAAGCGACCAACGATGCTTCTGCGGATGCGAACGATCCATCGGACGATGTGATGCTGGTGGACGATACGGACGCGGTCGTCGAGGAAGTCGGCGAAACGGCAGCCGTGCTGGTGCCGAAATCCAAGGACGGCGCGAATCAGTGGCTCACCGAGGAGGGACTGGCGGTAGCGAAGGAAAAGACGGGCAAGAAGCGATCGAAAGCGAGCTTGAAGCGCAAGAAGAAGAGCTTACTGTCGAAGCAAGGGACGGGCGAGATGTTGCTGGGCGATAGCAGCGAGGAGGAAACGGTGACGCTAACTTCAACGGATATGTGAATAAA]

[+] EMBL AGA280906            [TTTTTTATGTTTTGCGCTGCCGGCACGAT GAAGGAACGAGTTTTAACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAGAGTCGATCCGCCTCGACGGTCGAACGCTGGATGATTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGTACGCATCACCTGCGAGGTGGTGGAACCGAAGGCGATCCGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGAAGGCGGCACCACACTTCGACGGGGGCCGCCAATCGGACGAGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CNS09FP7             [                      GCACGATAGAAGGAACGAGTTTTAACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAGAGTCGATCCGCCTCGACGGTCGAACGCTCGATGAGTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGCACGCATCACCTGCGAGGTGGTGGAACCGAA GCGACCCGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGATGGCGGCACCACACTTCGACGGAGGCCGCCAATCGGACGAGTGTGTACAGTTGAACCGTATCCTGGAGCGGGCGCTGAAGGACTCGAACTGTGTCGATCTAGAATCGCTTTTTTGGTGTCGGAGGAAAAGGTGTGGAAGCTGCGCGTAGACGTGACGGTGCTGAACCACGAAGGCAACGCCCAGTGGATTGCTGCTCCATTGCTGCCCTGACCGCGCTGGCACACTTCAAGCGGCCGGACATCACGGTCGACGGCGAGGACGTGATTGTGCACACGATCGAAGAGAAAGATCCGCTGAAAGTGACTCTCTTCCACTATCCGCTGTGCGTGAGCTACGCCATCTTCAACCAGGGCAAGATCGCGATCGCCGATCCCACCTACCTGGAGGAGCGTGTGGCCGAGGCACGGATGGTGTTCGGGCTCAACTCGTACGGCGAGCTGTGTGGGTTGCATCTCGGCGGCACCACGCTGACCAGTGCCGAGCTGCTGCTGCGCACCTCGGCAAAGGCGAGCAAGCGGGCCCGGCTGGTGGTGGAACGCATCAAAGCCGCCATTCAGAAAGATGCCGAGGATCGTGAAAAGGGCCGTCCGGTCGGGGTTTAGCGAGGGCATTGAACGGAACGAGACGACGGTACACGCGCAGGACAGAATGCAGGTGCGGTTGAAACGCTTCAAGC                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CNS09FP8             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGGCAACG CCA TCGATTGCTGCTCCATTGCTGCCCTGACCGCGCTGGCACACTTCAAGCGGCCGGACATCACGGTCGACGGCGAGGACGTGATTGTGCACACGATCGAAGAGAAAGATCCGCTGAAAGTAACTCTCTTCCACTATCCGCTGTGCGTGAG TACGCCATCTTCAACCAGGGCAAGATCGCGATCGCCGATCCCACCTACCTGGAGGAGCGTGTGGCCGAGGCACGGATGGTGTTCGGGCTCAACTCGTACGGCGAGCTGTGTGGGTTGCATCTCGGCGGCACCACGCTGACCAGTGCCGAGCTGCT CTGCGCACCTCGGCAAAGGCGAGCAAGCGGGCCCGGCTGGTGGTGGAACGCATCAAAGCCGCCATTCAGAAAGATGCCGAGGATCGTGAAAAGGGCCGTCCGGTC GGGTTTAGCGAGGGCATTGAACGGAACGAGACGACCCCACACGCGCAGGACAGAATGCAGGTGCGGTTGAAACGCTTCAAGCTTCAGATTGAGGGCCAAGAGCGGACTGATCACGATGACGGACAGGATGAGGAAGATGAAGAAGAGGTGGCGCAGGAGGAGATGGAAGCGACCAACGATGCTTCTGCGGATGCGAACGATCCATCGGACGATGTGATGCTGGTGGACGATACGGACGCGGTCGTCGAGGAAGTCGGCGAAACGGCAGCCGTGCTGGTGCCGAAATCCAAGGACGGCGCGAATCAGTGGCTCACCGAGGAGGGACTGGCGGTAGCGAAGGAAAAGACGGGCAAGAAGCGATCGAAAGCGAGCTTGAAGCGCAAGAAGAAGAGCTTACTGTCGAAGCAAGGGACGGGCGAGATGTTGCTGGGCGATAGCAGCGAGGAGGAAACGGTGACGCTAACTTCAACGGATATGTGAATAAA]




>consensus_6582#0
TTTTTTATGTTTTGCGCTGCCGGCACGATGAAGGAACGAGTTTTAACCACTAATGAAAAA
TCCTTCGTTCAAAAGGCCATTCTAGAGTCGATCCGCCTCGACGGTCGAACGCTGGATGAT
TTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGT
GAGACGCGAGCCCTGGTACGCATCACCTGCGAGGTGGTGGAACCGAAGCGATCCGCCCGA
ACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGAAGGCGGCACCACACTTCGACG
GGGGCCGCCAATCGGACGAGTGTGTACAGTTGAACCGTATCCTGGAGCGGGCGCTGAAGG
ACTCGAACTGTGTCGATCTAGAATCGCTTTTTTGGTGTCGGAGGAAAAGGTGTGGAAGCT
GCGCGTAGACGTGACGGTGCTGAACCACGAAGGCAACGCCCAGTGGATTGCTGCTCCATT
GCTGCCCTGACCGCGCTGGCACACTTCAAGCGGCCGGACATCACGGTCGACGGCGAGGAC
GTGATTGTGCACACGATCGAAGAGAAAGATCCGCTGAAAGTGACTCTCTTCCACTATCCG
CTGTGCGTGAGCTACGCCATCTTCAACCAGGGCAAGATCGCGATCGCCGATCCCACCTAC
CTGGAGGAGCGTGTGGCCGAGGCACGGATGGTGTTCGGGCTCAACTCGTACGGCGAGCTG
TGTGGGTTGCATCTCGGCGGCACCACGCTGACCAGTGCCGAGCTGCTGCTGCGCACCTCG
GCAAAGGCGAGCAAGCGGGCCCGGCTGGTGGTGGAACGCATCAAAGCCGCCATTCAGAAA
GATGCCGAGGATCGTGAAAAGGGCCGTCCGGTCGGGGTTTAGCGAGGGCATTGAACGGAA
CGAGACGACGGTACACGCGCAGGACAGAATGCAGGTGCGGTTGAAACGCTTCAAGCTTCA
GATTGAGGGCCAAGAGCGGACTGATCACGATGACGGACAGGATGAGGAAGATGAAGAAGA
GGTGGCGCAGGAGGAGATGGAAGCGACCAACGATGCTTCTGCGGATGCGAACGATCCATC
GGACGATGTGATGCTGGTGGACGATACGGACGCGGTCGTCGAGGAAGTCGGCGAAACGGC
AGCCGTGCTGGTGCCGAAATCCAAGGACGGCGCGAATCAGTGGCTCACCGAGGAGGGACT
GGCGGTAGCGAAGGAAAAGACGGGCAAGAAGCGATCGAAAGCGAGCTTGAAGCGCAAGAA
GAAGAGCTTACTGTCGAAGCAAGGGACGGGCGAGATGTTGCTGGGCGATAGCAGCGAGGA
GGAAACGGTGACGCTAACTTCAACGGATATGTGAATAAA

consensusID : consensus_6582#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [TCGCCAGGNTATTTACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAAGTCGATCCGCCTCGACGGTCGAACGCTGGATGAGTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGCACGCATTAACTGCGAAGTGGTGGGAANCCGAAAGGCGAACCCGGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGATGTGCGGCACCACACTTCGACGGGGGCCGCCAAATCGGACGAGTGTGTTACAGTTGAACCGCATCCTGGAA]

[+] EMBL AL932278             [TCGCCAGGNTATTTACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAAGTCGATCCGCCTCGACGGTCGAACGCTGGATGAGTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGCACGCATTAACTGCGAAGTGGTGGGAANCCGAAAGGCGAACCCGGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGATGTGCGGCACCACACTTCGACGGGGGCCGCCAAATCGGACGAGTGTGTTACAGTTGAACCGCATCCTGGAA]




>consensus_6582#1
TCGCCAGGNTATTTACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAAGTCGAT
CCGCCTCGACGGTCGAACGCTGGATGAGTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGA
ATGGGGCCTGGTGCACGTCATCCTGGGTGAGACGCGAGCCCTGGCACGCATTAACTGCGA
AGTGGTGGGAANCCGAAAGGCGAACCCGGCCCGAACGAGGGTATGCTGTTCTTGAACGTC
GAGCTGGGCCCGATGTGCGGCACCACACTTCGACGGGGGCCGCCAAATCGGACGAGTGTG
TTACAGTTGAACCGCATCCTGGAA

consensusID : consensus_6582#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [AGGAGGAAATGGAAGCAACCAATGATGCTTTTGCGGATGCGAACGATCCATCGGACGATGTGATGCTGGTGGACGATACGGACGCGGTAGTCGAGGAAGTCGGCGAAACAGCAGCCGTGCTGGTGCCGAAATCCGGCGCAAATCAGTGGCTCACGGAGGAGGAACTGGCGGCGGCTAAAGAAAAGACGGGCAAGAAGCGATCGAAAGCAAGCTTGAAGCGCAAGAAGAAGAGCTTACTGTTGAAGCAAGGGACAAGCGAAATGTTGCTGGACGATAGCAGC]

[-] EMBL AGA282534            [AGGAGGAAATGGAAGCAACCAATGATGCTTTTGCGGATGCGAACGATCCATCGGACGATGTGATGCTGGTGGACGATACGGACGCGGTAGTCGAGGAAGTCGGCGAAACAGCAGCCGTGCTGGTGCCGAAATCCGGCGCAAATCAGTGGCTCACGGAGGAGGAACTGGCGGCGGCTAAAGAAAAGACGGGCAAGAAGCGATCGAAAGCAAGCTTGAAGCGCAAGAAGAAGAGCTTACTGTTGAAGCAAGGGACAAGCGAAATGTTGCTGGACGATAGCAGC]




>consensus_6582#2
AGGAGGAAATGGAAGCAACCAATGATGCTTTTGCGGATGCGAACGATCCATCGGACGATG
TGATGCTGGTGGACGATACGGACGCGGTAGTCGAGGAAGTCGGCGAAACAGCAGCCGTGC
TGGTGCCGAAATCCGGCGCAAATCAGTGGCTCACGGAGGAGGAACTGGCGGCGGCTAAAG
AAAAGACGGGCAAGAAGCGATCGAAAGCAAGCTTGAAGCGCAAGAAGAAGAGCTTACTGT
TGAAGCAAGGGACAAGCGAAATGTTGCTGGACGATAGCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6582#0      TTTTTTATGTTTTGCGCTGCCGGCACGATGAAGGAACGAGTTTTAACCACTAATGAAAAA 60
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      TCCTTCGTTCAAAAGGCCATTCTAGAGTCGATCCGCCTCGACGGTCGAACGCTGGATGAT 120
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      TTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGTGCACGTCATCCTGGGT 180
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      GAGACGCGAGCCCTGGTACGCATCACCTGCGAGGTGGTGGAACCGAAGCGATCCGCCCGA 240
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      ACGAGGGTATGCTGTTCTTGAACGTCGAGCTGGGCCCGAAGGCGGCACCACACTTCGACG 300
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      GGGGCCGCCAATCGGACGAGTGTGTACAGTTGAACCGTATCCTGGAGCGGGCGCTGAAGG 360
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      ACTCGAACTGTGTCGATCTAGAATCGCTTTTTTGGTGTCGGAGGAAAAGGTGTGGAAGCT 420
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      GCGCGTAGACGTGACGGTGCTGAACCACGAAGGCAACGCCCAGTGGATTGCTGCTCCATT 480
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      GCTGCCCTGACCGCGCTGGCACACTTCAAGCGGCCGGACATCACGGTCGACGGCGAGGAC 540
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      GTGATTGTGCACACGATCGAAGAGAAAGATCCGCTGAAAGTGACTCTCTTCCACTATCCG 600
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      CTGTGCGTGAGCTACGCCATCTTCAACCAGGGCAAGATCGCGATCGCCGATCCCACCTAC 660
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      CTGGAGGAGCGTGTGGCCGAGGCACGGATGGTGTTCGGGCTCAACTCGTACGGCGAGCTG 720
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      TGTGGGTTGCATCTCGGCGGCACCACGCTGACCAGTGCCGAGCTGCTGCTGCGCACCTCG 780
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      GCAAAGGCGAGCAAGCGGGCCCGGCTGGTGGTGGAACGCATCAAAGCCGCCATTCAGAAA 840
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      GATGCCGAGGATCGTGAAAAGGGCCGTCCGGTCGGGGTTTAGCGAGGGCATTGAACGGAA 900
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      CGAGACGACGGTACACGCGCAGGACAGAATGCAGGTGCGGTTGAAACGCTTCAAGCTTCA 960
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------------------
                                                                                  

consensus_6582#0      GATTGAGGGCCAAGAGCGGACTGATCACGATGACGGACAGGATGAGGAAGATGAAGAAGA 1020
consensus_6582#2      ------------------------------------------------------------
consensus_6582#1      ------------------------------------------------TCGCCAGGNTAT 12
                                                                                  

consensus_6582#0      GGTGGCGCAGGAGGAGATGGAAGCGACCAACGATGCTTCTGCG--GATGCGAACGATCCA 1078
consensus_6582#2      --------AGGAGGAAATGGAAGCAACCAATGATGCTTTTGCG--GATGCGAACGATCCA 50
consensus_6582#1      TTACCACTAATGAAAAATCCTTCGTTCAAAAGGCCATTCTAAGTCGATCCGCCTCGACGG 72
                              *     * **        * ** *    ** *  *  *** **      *  

consensus_6582#0      TCGGACGATGTGATGCTGGTGGACGATACGGACG-----CGGTCGTCGAGGAAGTCGGCG 1133
consensus_6582#2      TCGGACGATGTGATGCTGGTGGACGATACGGACG-----CGGTAGTCGAGGAAGTCGGCG 105
consensus_6582#1      TCGAACGCTGGATGAGTTCCGCAAGCTGCGGATAAGCTTCGGCAGCGAATGGGGCCTGGT 132
                      *** *** **      *   * * * * ****       ***  *   * *  * * *  

consensus_6582#0      AAACGGCAGCCGTGCTGGTGCCGAAATCCAAGGACGGCGCGAATCAGTGGCTCACCGAGG 1193
consensus_6582#2      AAACAGCAGCCGTGCTGGTGCCGAAATC------CGGCGCAAATCAGTGGCTCACGGAGG 159
consensus_6582#1      GCACGTCATCCTGGGTGAGACGCGAGCCC-----TGGCACGCATTAACTGCGAAGTGGTG 187
                        **  ** **  * **   *   *  *       *** *  ** *   **  *  *  *

consensus_6582#0      AGGGACTGGCGG-------TAGCGAAGGAAAAGACGGGCAAGAAGCGATCG--AAAGCGA 1244
consensus_6582#2      AGGAACTGGCGG-------CGGCTAAAGAAAAGACGGGCAAGAAGCGATCG--AAAGCAA 210
consensus_6582#1      GGAANCCGAAAGGCGAACCCGGCCCGAACGAGGGTATGCTGTTCTTGAACGTCGAGCTGG 247
                       *   * *   *         **       * *    **       ** **   *     

consensus_6582#0      GCTTGAAGCGCAAGAAGAAGAGCTTACTGTCGAAGCAAG---GGACGGGCGAGATGTTGC 1301
consensus_6582#2      GCTTGAAGCGCAAGAAGAAGAGCTTACTGTTGAAGCAAG---GGACAAGCGAAATGTTGC 267
consensus_6582#1      GCCCGATGTGCGGCACCACACTTCGACGGGGGCCGCCAAATCGGACGAGTGTGTTACAGT 307
                      **  ** * **   *  *       ** *  *  ** *    ****  * *   *   * 

consensus_6582#0      TGGGCGATAGCAGCGAGGAGGAAACGGTGACGCTAACTTCAACGGATATGTGAATAAA 1359
consensus_6582#2      TGGACGATAGCAGC-------------------------------------------- 281
consensus_6582#1      TGAACCGCATCCTGGAA----------------------------------------- 324
                      **  *   * *