cluster # 6587

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Anopheles gambiae
cluster # 6587 cluster # 6587 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6587#0 length = 749 sequences # 3

consensus_6587#1 length = 173 sequences # 1
consensus_6587#2 length = 88 sequences # 1

consensusID : consensus_6587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 749
fasta sequence

                              [GCAGCACAACATCATCGCCCAATGTGGTTACAATAAGCTACAATCGTCTTCTTTAAAATAAATACAAAACGGGAAGGAGAGCGAGGGAAAGGAATAGATGGGGTTAAGAAAAGAAGAAGAAAAAACACAAACCCCTAGCTGCCCATCAATCCCAAGGAATT-GGGATCGATCTGTCTCCAGACGCCCTCCTGCAGCATCCCCGTTTTTTCACTTACTTAGTTGCGATGGAATATGGCAGGAGGAAGCGAGTGTGCGTGTGAGTGTGTTTGAATAATTAGACTTACGGCGTATGTGCGTGCGTATGGTTCTTTTTTTGCCACGCCACCGTACCTCAGTTCCATTTCCCTTTTAATCTTCTCTTCTTTCTTCGTGGGCGGTGCTGAGATCGGTAGCGTTATTTATTAAGCAGATTAGCAGAGAGACAGAGAAGCATTATATCATTCATACGAACAGACTTACACACACACACACTCACAACACAGAGCATAGGAGCAACATCAACAAGAAGCATAACAGATGTAAGCATACAACATAAACTAGGCATTAGTGGCAAATGTTTTACACCCGTAACAGGTTAGTTCGACGATGTGCAGATTATTAAATACTTGCAGTACATTTATCGGTACGATTATAAAGTGCCAACATACACACACAACACACATTTCTCCAACACTACTTACTGCTGCAACAGAGCCGTGGGCAGGGTTCGTCGGGCGTGGGATATTTTCGATAATTTCTAGCAAATAATA]

[+] EMBL BM628110             [GCAGCACAACATCATCGCCCAATGTGGTTACAATAAGCTACAATCGTCTTCTTTAAAATAAATACAAAACGGGAAGGAGAGCGAGGGAAAGGAATAGATGGGGTTAAGAAAAGAAGAAGAAAAAACACAAACCCCTAGCTGCCCATCAATCCCAAGGAATTGGGGATCGATCTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX613921             [                                                                                                                                 AACCCCTAGCTGCCCATCAATCCCAAGGAATT GGGATCGATCTGTCTCCAGACGCCCTCCTGCAGCATCCCCGTTTTTTCACTTACTTAGTTGCGATGGAATATGGCAGGAGGAAGCGAGTGTGCGTGTGAGTGTGTTTGAATAATTAGACTTACGGCGTATGTGCGTGCGTATGGTTCTTTTTTTGCCACGCCACCGTACCTCAGTTCCATTTCCCTTTTAATCTTCTCTTCTTTCTTCGTGGGCGGTGCTGAGATCGGTAGCGTTATTTATTAAGCAGATTAGCAGAGAGACAGAGAAGCATTATATCATTCATACGAACAGACTTACACACACACACACTCACAACACAGAGCATAGGAGCAACATCAACAAGAAGCATAACAGATGTAAGCATACAACATAAACTAGGCATTAGTGGCAAATGTTTTACACCCGTAACAGGTTAGTTCGACGATGTGCAGATTATTAAATACTTGCAGTACATTTATCGGTACGATTATAAAGTGCCAACATACACACACAACACACATTTCTCCAACACTACTTACTGCTGCAACAGAGCCGTGGGCAGGGTTCGTCGGGCGTGGGATATTTTCGATAATTTCTAGCAAATAATA]
[+] EMBL BX620449             [                                                                                                                                 AACCCCTAGCTGCCCATCAATCCCAAGGAATT GGGATCGATCTGTCTCCAGACGCCCTCCTGCAGCATCCCCGTTTTTTCACTTACTTAGTTGCGATGGAATATGGCAGGAGGAAGCGAGTGTGCGTGTGAGTGTGTTTGAATAATTAGACTTACGGCGTATGTGCGTGCGTATGGTTCTTTTTTTGCCACGCCACCGTACCTCAGTTCCATTTCCTTTTTAATCTTCTCTTCTTTCTTCGTGGGCGGTGCTGAGATCGGTAGCGTTATTTATTAAGCAGATTAGCAGAGAGACAGAGAAGCATTATATCATTCATACGAACAGACTTACACACACACACACTCACAACACAGAGCATAGGAGCAACATCAACAAGAAGCATAACAGATGTAAGCATACAACATAAACTAGGCATTAGTGGCAAATGTTTTACACCCGTAACAGGTTAGTTCGACGATGTGCAGATTATTAAATACTTGCAGTACATTTATCGGTACGATTATAAAGTGCCAACATACACACACAACACACATTTCTCCAACACTACTTACTGCTGCAACAGAGCCGTGGGCAGGGTTCGTCGGGCGTGGG                             ]




>consensus_6587#0
GCAGCACAACATCATCGCCCAATGTGGTTACAATAAGCTACAATCGTCTTCTTTAAAATA
AATACAAAACGGGAAGGAGAGCGAGGGAAAGGAATAGATGGGGTTAAGAAAAGAAGAAGA
AAAAACACAAACCCCTAGCTGCCCATCAATCCCAAGGAATTGGGATCGATCTGTCTCCAG
ACGCCCTCCTGCAGCATCCCCGTTTTTTCACTTACTTAGTTGCGATGGAATATGGCAGGA
GGAAGCGAGTGTGCGTGTGAGTGTGTTTGAATAATTAGACTTACGGCGTATGTGCGTGCG
TATGGTTCTTTTTTTGCCACGCCACCGTACCTCAGTTCCATTTCCCTTTTAATCTTCTCT
TCTTTCTTCGTGGGCGGTGCTGAGATCGGTAGCGTTATTTATTAAGCAGATTAGCAGAGA
GACAGAGAAGCATTATATCATTCATACGAACAGACTTACACACACACACACTCACAACAC
AGAGCATAGGAGCAACATCAACAAGAAGCATAACAGATGTAAGCATACAACATAAACTAG
GCATTAGTGGCAAATGTTTTACACCCGTAACAGGTTAGTTCGACGATGTGCAGATTATTA
AATACTTGCAGTACATTTATCGGTACGATTATAAAGTGCCAACATACACACACAACACAC
ATTTCTCCAACACTACTTACTGCTGCAACAGAGCCGTGGGCAGGGTTCGTCGGGCGTGGG
ATATTTTCGATAATTTCTAGCAAATAATA

consensusID : consensus_6587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence

                              [CCGGGCAAATGTTTTATGCTTACATCTGTTATGCTTCTTGTTGATGTTGCTCCTATGCTCTGTGTTGCGAGTGTGCGTGTGAGTGTGTTTGAATAATTAGACTTACGCGGTATGTGCGTGCGTATGGTTCTTTTTTTTTTGCCACGCCACCGTACCTCAGTTCCATTTCCCTT]

[+] EMBL BM629919             [CCGGGCAAATGTTTTATGCTTACATCTGTTATGCTTCTTGTTGATGTTGCTCCTATGCTCTGTGTTGCGAGTGTGCGTGTGAGTGTGTTTGAATAATTAGACTTACGCGGTATGTGCGTGCGTATGGTTCTTTTTTTTTTGCCACGCCACCGTACCTCAGTTCCATTTCCCTT]




>consensus_6587#1
CCGGGCAAATGTTTTATGCTTACATCTGTTATGCTTCTTGTTGATGTTGCTCCTATGCTC
TGTGTTGCGAGTGTGCGTGTGAGTGTGTTTGAATAATTAGACTTACGCGGTATGTGCGTG
CGTATGGTTCTTTTTTTTTTGCCACGCCACCGTACCTCAGTTCCATTTCCCTT

consensusID : consensus_6587#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 88
fasta sequence

                              [GCCCAAGGAATTGGGGACGATCTGTCTCCAGACGCCCTCCAGCAGCATCCCCGTTATTTCACTTACTCAGCTGCGAAGGAATATGGCA]

[+] EMBL BX613922             [GCCCAAGGAATTGGGGACGATCTGTCTCCAGACGCCCTCCAGCAGCATCCCCGTTATTTCACTTACTCAGCTGCGAAGGAATATGGCA]




>consensus_6587#2
GCCCAAGGAATTGGGGACGATCTGTCTCCAGACGCCCTCCAGCAGCATCCCCGTTATTTC
ACTTACTCAGCTGCGAAGGAATATGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6587#0      GCAGCACAACATCATCGCCCAATGTGGTTACAATAAGCTACAATCGTCTTCTTTAAAATA 60
consensus_6587#2      ------------------------------------------------------------
consensus_6587#1      ------------------------------------------------------------
                                                                                  

consensus_6587#0      AATACAAAACGGGAAGGAGAGCGAGGGAAAGGAATAGATGGGGTTAAGAAAAGAAGAAGA 120
consensus_6587#2      ------------------------------------------------------------
consensus_6587#1      ------------------------------------------------------------
                                                                                  

consensus_6587#0      AAAAACACAAACCCCTAGCTGCCCATCAATCCCAAGGAATTGGGATCGATCTGTCTCCAG 180
consensus_6587#2      -----------------------------GCCCAAGGAATTGGGGACGATCTGTCTCCAG 31
consensus_6587#1      ---------------------------CCGGGCAAATGTTTTATGCTTACATCTGTTATG 33
                                                      ***    **       *  * * *   *

consensus_6587#0      ACGCCCTCCTGCAGCATCCCCGTTTTTTCACTTACTTAGTTGCGATGGAATATGGCAGGA 240
consensus_6587#2      ACGCCCTCCAGCAGCATCCCCGTTATTTCACTTACTCAGCTGCGAAGGAATATGGCA--- 88
consensus_6587#1      CTTCTTGTTGATGTTGCTCCTATGCTCTGTGTTGCGAGTGTGCGTGTGAGTGTGTTTGAA 93
                         *              **  *  * *   ** *     ****   ** * **      

consensus_6587#0      GGAAGCGAGTGTGCGTGTGAGTGTGTTTGAATAATTAGACTTACGGCGTATGTGCGTGCG 300
consensus_6587#2      ------------------------------------------------------------
consensus_6587#1      TAATTAGACTTACGCGGTATGTGCGTGCGTATGGTTCTTTTTTTTTTGCCACGCCACCGT 153
                                                                                  

consensus_6587#0      TATGGTTCTTTTTTTGCCACGCCACCGTACCTCAGTTCCATTTCCCTTTTAATCTTCTCT 360
consensus_6587#2      ------------------------------------------------------------
consensus_6587#1      ACCTCAGTTCCATTTCCCTT---------------------------------------- 173
                                                                                  

consensus_6587#0      TCTTTCTTCGTGGGCGGTGCTGAGATCGGTAGCGTTATTTATTAAGCAGATTAGCAGAGA 420
consensus_6587#2      ------------------------------------------------------------
consensus_6587#1      ------------------------------------------------------------
                                                                                  

consensus_6587#0      GACAGAGAAGCATTATATCATTCATACGAACAGACTTACACACACACACACTCACAACAC 480
consensus_6587#2      ------------------------------------------------------------
consensus_6587#1      ------------------------------------------------------------
                                                                                  

consensus_6587#0      AGAGCATAGGAGCAACATCAACAAGAAGCATAACAGATGTAAGCATACAACATAAACTAG 540
consensus_6587#2      ------------------------------------------------------------
consensus_6587#1      ------------------------------------------------------------
                                                                                  

consensus_6587#0      GCATTAGTGGCAAATGTTTTACACCCGTAACAGGTTAGTTCGACGATGTGCAGATTATTA 600
consensus_6587#2      ------------------------------------------------------------
consensus_6587#1      ------------------------------------------------------------
                                                                                  

consensus_6587#0      AATACTTGCAGTACATTTATCGGTACGATTATAAAGTGCCAACATACACACACAACACAC 660
consensus_6587#2      ------------------------------------------------------------
consensus_6587#1      ------------------------------------------------------------
                                                                                  

consensus_6587#0      ATTTCTCCAACACTACTTACTGCTGCAACAGAGCCGTGGGCAGGGTTCGTCGGGCGTGGG 720
consensus_6587#2      ------------------------------------------------------------
consensus_6587#1      ------------------------------------------------------------
                                                                                  

consensus_6587#0      ATATTTTCGATAATTTCTAGCAAATAATA 749
consensus_6587#2      -----------------------------
consensus_6587#1      -----------------------------