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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 919 fasta sequence
[CCGGCGCCCAATCGTGTCAGTACTATCCGGCCATCGCTCTGACGCACAAGATGGGATGGCCGGCGTTTTTGAACTTTAGAAAAAATATCCGAACACACGCAGCGTTCGTCGGTGTTATATTGATTCTATATGCGATATTCTCTATCCTTACTGGAGTGGCTTGGTGGTTGGAGGTAAAAGTGCAGACCGGATCGGACAAAATAGATTATGAAGTGAAAGCTGAAGCATTCAGTCCTAAGAGCAAGAGGTCAATTGATGCGGGGTGGTCATTCAATGCAGTGGGCGATGGTGGATCCGGCACAACCAGGTTGCGGAGGTCAATTCGAAAACTGTTTTCTTCGAAGAGTAAAAAGAAAAAGGTTAATACAATGTTCTCGGCATTCGACAATGCCGGAGCCAAAGAAGCCATCAGCCACGAGATCAACCTGGATATCAACCAGAAGTCCACTCAATACATCAACCAGAGGATCAGCCAAGATACCATTCAGAAGGCCATCCAGGAGATCAACCAGGAGATCAACCTGGAGATCATGTTCATCAAAGCAGGCTTCCTCATCATGAGTATTGTGAGTTCGTTCATTACAATTATGTACTGGATCGCGTATCTCAAGCGTCAACA-TTTGTTTCTCGTAATATTCATCGGACTTATGACCATTTGCTTTCGCGGGTCTATTCCATCGGGGATGTTCGTCATGATACAGCAGCAGAAATTCATCTGGGCGTGCGCAATGCTATTCGGATTCCTCTTGAACGGATATGTGCTGACGGTGGCGCTGCAACTACTTTCATATATTGAATCTACCCGGCGACAACACAGTTACGGTGCCAAGATGTGTATGCTTCCAGTGAAGTAATTAGTTACAGATTTGCAACGCTATTCTTGAATATATGAAACATGTTCTCGCCATTGGACTTTGAT]
[+] EMBL BM645237 [CCGGCGCCCAATCGTGTCAGTACTATCCGGCCATCGCTCTGACGCACAAGATGGGATGGCCGGCGTTTTTGAACTTTAGAAAAAATATCCGAACACACGCAGCGTTCGTCGGTGTTATATTGATTCTATATGCGATATTCTCTATCCTTACTGGAGTGGCTTGGTGGTTGGAGGTAAAAGTGCAGACCGGATCGGACAAAATAGATTATGAAGTGAAAGCTGAAGCATTCAGTCCTAAGAGCAAGAGGTCAATTGATGCGGGGTGGTCATTCAATGCAGTGGGCGATGGTGGATCCGGCACAACCAGGTTGCGGAGGTCAATTCGAAAACTGTTTTCTTCGAAGAGTAAAAAGAAAAAGGTTAATACAATGTTCTCGGCATTCGACAATGCCGGAGCCAAAGAAGCCATCAGCCACGAGATCAACCTGGATATCAACCAGAAGTCCACTCAATACATCAACCAGAGGATCAGCCAAGATACCATTCAGAAGGCCATCCAGGAGATCAACCAGGAGATCAACCTGGAGATCATGTTCATCAAAGCAGGCTTCCTCATCATGAGTATTGTGAGTTCGTTCATTACAATTATGTACTGGATCGCGTATCTCAAGCGTCAACATTTTGTTTCTCGTAA ]
[+] EMBL BM646506 [ ccgCTGACGCACAAGATGGGATGGCCGGCGTTTTTGAACTTTAGAAAAAATATCCGAACACACGCAGCGTTCGTCGGTGTTATATTGATTCTATATGCGATATTCTCTATCCTTACTGGAGTGGCTTGGTGGTTGGAGGTAAAAGTGCAGACCGGATCGGACAAAATAGATTATGAAGTGAAAGCTGAAGCATTCAGTCCTAAGAGCAAGAGGTCAATTGATGCGGGGTGGTCATTCAATGCAGTGGGCGATGGTGGATCCGGCACAACCAGGTTGCGGAGGTCAATTCGAAAACTGTTTTCTTCGAAGAGTAAAAAGAAAAAGGTTAATACAATGTTCTCGGCATTCGACAATGCCGGAGCCAAAGAAGCCATCAGCCACGAGATCAACCTGGATATCAACCAGAAGTCCACTCAATACATCAACCAGAGGATCAGCCAAGATACCATTCAGAAGGCCATCCAGGAGATCAACCAGGAGATCAACCTGGAGATCATGTTCATCAAAGCAGGCTTCCTCATCATGAGTATTGTGAGTTCGTTCATTACAATTATGTACTGGATCGCGTATCTCAAGCGTCAACA TTTGTTTCTCGTAATATTCATCGGACTTATGACCATTTGCTTTCGCGGGTCTATTCCATCGGGGATGTTCGTCATGATAC ]
[+] EMBL BM646886 [ ccgATTGATGCGGGGTGGTCATTCAATGCAGTGGGCGATGGTGGATCCGGCACAACCAGGTTGCGGAGGTCAATTCGAAAACTGTTTTCTTCGAAGAGTAAAAAGAAAAAGGTTAATACAATGTTCTCGGCATTCGACAATGCCGGAGCCAAAGAAGCCATCAGCCACGAGATCAACCTGGATATCAACCAGAAGTCCACTCAATACATCAACCAGAGGATCAGCCAAGATACCATTCAGAAGGCCATCCAGGAGATCAACCAGGAGATCAACCTGGAGATCATGTTCATCAAAGCAGGCTTCCTCATCATGAGTATTGTGAGTTCGTTCATTACAATTATGTACTGGATCGCGTATCTCAAGCGTCAACA TTTGTTTCTCGTAATATTCATCGGACTTATGACCA TTGCTTTCGCGGGTCTA TCCATC GGGATGTTCGTCATGATACAGCAGCAGAAATTCATCTGGGCGTGCGCAATGCTATTCGGATTCCTCTTGAACGGATATGTGCTGACGGTGGCGCTGCAACTACTTTCATATATTGAATCTACCCGGCGACAACACAGTTACGGTGCCAAGATGTGTATGCTTCCAGTGAAGTAATTAGTTACAGATTTGCAACGCTATTCTTGAATATATGAAACATGTTCTCGCCATTGGACTTTGAT]
consensusID : consensus_6590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[CCGCTCTGACGCACAAGATGGGATGGCCGGCGTTTTTGAACTTTAGAAAGAATATCCGAACACACGCAGCGTTCGTCGGTGTGATATTGATTCTATATGCGATATTCTCTATCCTTGCTGGAGTGGCTTGGTGGTTGGAGGTAAAAGTGCAGACCGGATTGGACAAAATAGATTATGAAGTGAAAGCTGATGCATCCAGTCCTAAGAGCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAGGCATGCCGTTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGACGAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATTGGACTTTGACAGAATCAGAGAAGCCATCAGCCACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCAACCAGAAGTCCACTCAATATATCAACCAGGAGACCATTGAGAAGACCATTCAGGAGATCAGCCAGGAGATCAGCCAGGAGATTTACACGGAGATCATGTTCATCAAGGTAGACTTCCTCATCATGAGCATTGTGAGTTCGTTCACTACAATCATCTACTGGATCGCGTATCTCAAGCGTCAACAGTTGTTTCTCGTAATATTTATCGGACTTATGACCTTTGCTTTTGTGGCTCTATCCAT]
[+] EMBL BM629373 [CCGCTCTGACGCACAAGATGGGATGGCCGGCGTTTTTGAACTTTAGAAAGAATATCCGAACACACGCAGCGTTCGTCGGTGTGATATTGATTCTATATGCGATATTCTCTATCCTTGCTGGAGTGGCTTGGTGGTTGGAGGTAAAAGTGCAGACCGGATTGGACAAAATAGATTATGAAGTGAAAGCTGATGCATCCAGTCCTAAGAGCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAGGCATGCCGTTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGACGAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATTGGACTTTGACAGAATCAGAGAAGCCATCAGCCACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCAACCAGAAGTCCACTCAATATATCAACCAGGAGACCATTGAGAAGACCATTCAGGAGATCAGCCAGGAGATCAGCCAGGAGATTTACACGGAGATCATGTTCATCAAGGTAGACTTCCTCATCATGAGCATTGTGAGTTCGTTCACTACAATCATCTACTGGATCGCGTATCTCAAGCGTCAACAGTTGTTTCTCGTAATATTTATCGGACTTATGACCTTTGCTTTTGTGGCTCTATCCAT]
consensusID : consensus_6590#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[CAGAATNGCCCGAGGTTATTATGAAGTGAAAGCTGATGCATCCAGTCTAAGATGCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAGTGCATGCCGTTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGACGAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATNTGGACTTTGACNAGAATCAGAGAAGCCATCAGCACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCAACCAGAAGTCCACTCAATATATCAACCAGGAGANCATTGAGAAGACATATCAGGAGATCAGCCAGGAGATCAGCCAGCGAGCATTTACACGGAGATCATGTTCATCAAGGTACGACTATCCTCATCATGAGCCATTGTAGCAGTTCGTTCACTACAATCATCTACTTGGATCGCGTATCTCAAGCGTCAACAGTAGTACTCGTAATCATNTATCGGACTNNTATGACCTATTGCTCAAGTAGGATCTATCCATCGGGATGTTCGTCATGATTACAGCCAGCTAGCAAATTACATCTGNGGCGATGCGCAATTGCTATCGGAT]
[+] EMBL AL697414 [CAGAATNGCCCGAGGTTATTATGAAGTGAAAGCTGATGCATCCAGTCTAAGATGCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAGTGCATGCCGTTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGACGAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATNTGGACTTTGACNAGAATCAGAGAAGCCATCAGCACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCAACCAGAAGTCCACTCAATATATCAACCAGGAGANCATTGAGAAGACATATCAGGAGATCAGCCAGGAGATCAGCCAGCGAGCATTTACACGGAGATCATGTTCATCAAGGTACGACTATCCTCATCATGAGCCATTGTAGCAGTTCGTTCACTACAATCATCTACTTGGATCGCGTATCTCAAGCGTCAACAGTAGTACTCGTAATCATNTATCGGACTNNTATGACCTATTGCTCAAGTAGGATCTATCCATCGGGATGTTCGTCATGATTACAGCCAGCTAGCAAATTACATCTGNGGCGATGCGCAATTGCTATCGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6590#1 ---------------------------------CCGCTCTGACGCACAAGATGGGATGGC 27
consensus_6590#2 ------------------------------------------------------------
consensus_6590#0 CCGGCGCCCAATCGTGTCAGTACTATCCGGCCATCGCTCTGACGCACAAGATGGGATGGC 60
consensus_6590#1 CGGCGTTTTTGAACTTTAGAAAGAATATCCGAACACACGCAGCGTTCGTCGGTGTGATAT 87
consensus_6590#2 ------------------------------------------------------------
consensus_6590#0 CGGCGTTTTTGAACTTTAGAAAAAATATCCGAACACACGCAGCGTTCGTCGGTGTTATAT 120
consensus_6590#1 TGATTCTATATGCGATATTCTCTATCCTTGCTGGAGTGGCTTGGTGGTTGGAGGTAAAAG 147
consensus_6590#2 ------------------------------------------------------------
consensus_6590#0 TGATTCTATATGCGATATTCTCTATCCTTACTGGAGTGGCTTGGTGGTTGGAGGTAAAAG 180
consensus_6590#1 TGCAGACCGGATTGGACAAAATAGATTATGAAGTGAAAGCTGATGCATCCAGTCCTAAGA 207
consensus_6590#2 -------CAGAATNGCCCGAGGTTATTATGAAGTGAAAGCTGATGCATCCAGTCTAAGAT 53
consensus_6590#0 TGCAGACCGGATCGGACAAAATAGATTATGAAGTGAAAGCTGAAGCATTCAGTCCTAAGA 240
* ** * * * ******************* **** ***** *
consensus_6590#1 GCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAG-GCATGCCG 266
consensus_6590#2 GCAAGAGGTCAATTGATGCGTGGTGGTCATTCAATGGCCAATCTATATCAGTGCATGCCG 113
consensus_6590#0 GCAAGAGGTCAATTGATGCGGGGTGGTCATTCAATG--CAGTGGGCGATGGTGGAT-CCG 297
******************** *************** ** * * * ** ***
consensus_6590#1 TTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGAC 326
consensus_6590#2 TTATCTTCGAAGAGTAAAAAGAAAATGGTTAATGCAATGTTCTCGCTATTGGAGATTGAC 173
consensus_6590#0 GCACAACCAGGTTGCGGAGGTCAATTCGAAAAC----TGTTTTCT---TCGAAGAGTAA- 349
* * * * ** * * ** **** ** * * *** * *
consensus_6590#1 GAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATT-GGACTTTGACA-GAA 384
consensus_6590#2 GAAATCAAAGAAGCCATGAGCCAGCACAGCATGTTCTCGCTATNTGGACTTTGACNAGAA 233
consensus_6590#0 ------AAAGAA---AAAGGTTAATACA--ATGTTCTCGGCATT-CGACAATGCCG-GAG 396
****** * * * *** ********* ** *** ** * **
consensus_6590#1 TCAGAGAAGCCATCAGCCACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCA 444
consensus_6590#2 TCAGAGAAGCCATCAGC-ACGAGATCAACCAGGAGAACCATGAGATCAGCCAGGATATCA 292
consensus_6590#0 CCAAAGAAGCCATCAGC---------------------CACGAGATCAACCTGGATATCA 435
** ************* ** ******* ** ********
consensus_6590#1 ACCAGAAGTCCACTCAATATATCAACCAGGAGACCATTGAGAAGACCATTCAGGAGATCA 504
consensus_6590#2 ACCAGAAGTCCACTCAATATATCAACCAGGAGANCATTGAGAAGACATATCAGGAGATCA 352
consensus_6590#0 ACCAGAAGTCCACTCAATACATCAACCAGAGGATCAGCCAAGATACCATTCAGAAGGCCA 495
******************* ********* ** ** * * ** **** ** **
consensus_6590#1 GCCAGGAGATCAGCCAG-GAG-ATTTACACGGAGATCATGTTCATCAAGGTA-GACT-TC 560
consensus_6590#2 GCCAGGAGATCAGCCAGCGAGCATTTACACGGAGATCATGTTCATCAAGGTACGACTATC 412
consensus_6590#0 TCCAGGAGATCAACCAG-GAG-ATCAACCTGGAGATCATGTTCATCAAAGCA-GGCT-TC 551
*********** **** *** ** ** ****************** * * * ** **
consensus_6590#1 CTCATCATGAGC-ATTGTG--AGTTCGTTCACTACAATCATCTACT-GGATCGCGTATCT 616
consensus_6590#2 CTCATCATGAGCCATTGTAGCAGTTCGTTCACTACAATCATCTACTTGGATCGCGTATCT 472
consensus_6590#0 CTCATCATGAGT-ATTGTG--AGTTCGTTCATTACAATTATGTACT-GGATCGCGTATCT 607
*********** ***** ********** ****** ** **** *************
consensus_6590#1 CAAGCGTCAACAGTTGTTTCTCGTAAT-ATTTATCGGACTTAT--GACCT-TTGCTTTTG 672
consensus_6590#2 CAAGCGTCAACAGTAGTA-CTCGTAATCATNTATCGGACTNNTATGACCTATTGCTCAAG 531
consensus_6590#0 CAAGCGTCAACATTTGTTTCTCGTAAT-ATTCATCGGACTTAT--GACCATTTGCTTTCG 664
************ * ** ******** ** ******** * **** ***** *
consensus_6590#1 T-GGCTCTATCCAT---------------------------------------------- 685
consensus_6590#2 TAGGATCTATCCATCGGG-ATGTTCGTCATGATTACAGCCAGCTAGCAAATTACATCTGN 590
consensus_6590#0 CGGGTCTATTCCATCGGGGATGTTCGTCATGATA-----CAGCAGCAGAAATTCATCTGG 719
** *****
consensus_6590#1 ------------------------------------------------------------
consensus_6590#2 GGCGATGCGCAATTGCTATCGGAT------------------------------------ 614
consensus_6590#0 G--CGTGCGCAATGCTATTCGGATTCCTCTTGAACGGATATGTGCTGACGGTGGCGCTGC 777
consensus_6590#1 ------------------------------------------------------------
consensus_6590#2 ------------------------------------------------------------
consensus_6590#0 AACTACTTTCATATATTGAATCTACCCGGCGACAACACAGTTACGGTGCCAAGATGTGTA 837
consensus_6590#1 ------------------------------------------------------------
consensus_6590#2 ------------------------------------------------------------
consensus_6590#0 TGCTTCCAGTGAAGTAATTAGTTACAGATTTGCAACGCTATTCTTGAATATATGAAACAT 897
consensus_6590#1 ----------------------
consensus_6590#2 ----------------------
consensus_6590#0 GTTCTCGCCATTGGACTTTGAT 919
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||