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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence
[CCGGTCGTACCGTGCGCCCCGAGGTTGCCCTGTTAGAACGCCCTATATACAAACAAATCGTCCGAAGGGACAACAGCGCTACAACCACGCAACACGCAAACGAACACCCGGTCGGCACACTGCACTACACAGTTGCGCATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCACGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAAGAAAGTGGCACAGATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCTAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAAACAGCCTATTGCTTTTGCAGTGGCAAACAGTGTGCGCATATGTAACGTGCTATAACACGGCCTACTGTGTCTGGGTGACGCTGTAAGATCACGT]
[+] EMBL BM632350 [CCGGTCGTACCGTGCGCCCCGAGGTTGCCCTGTTAGAACGCCCTATATACAAACAAATCGTCCGAAGGGACAACAGCGCTACAACCACGCAACACGCAAACGAACACCCGGTCGGCACACTGCACTACACAGTTGCGCATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAGAAAGTGGCACAAATATCGAAA ]
[+] EMBL BM621394 [ ccgATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCACGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAAGAAAGTGGCACAGATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCTAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAAACAGCCTATTGCTTTTGCAGTGGCAAACAGTGTGCGCATATGTAACGTGCTATAACACGGCCTACTGTGTCTGGGTGACGCTGTAAGATCACGT]
[+] EMBL BM579582 [ ccgCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCACGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCGGAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAAGAAAGTGGCACAGATATCGAAAATAACCACTTAACTAAA ]
consensusID : consensus_6626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAGAAAGTGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCCAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAGCCTATTGGCTTTTGCAGTGGCAAACAGTGTGCGCGTATGTAACGTGCTGTAACACGGCCTACT]
[+] EMBL BM635541 [CCGCGGACGCGTGGGCGGACGCGTGGGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAGAAAGTGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCCAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAGCCTATTGGCTTTTGCAGTGGCAAACAGTGTGCGCGTATGTAACGTGCTGTAACACGGCCTACT]
consensusID : consensus_6626#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[GATCGCCGAGGGTTTGTACACTGCACATACAATTAGTCAGTGATCACGCTCTGCTGGAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAGAAAAAAAACAAACCAAGTGCANAAAGGGTATTAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAACGAAAGTGGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCAT]
[+] EMBL AL930883 [GATCGCCGAGGGTTTGTACACTGCACATACAATTAGTCAGTGATCACGCTCTGCTGGAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAGAAAAAAAACAAACCAAGTGCANAAAGGGTATTAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAACGAAAGTGGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6626#1 ------------------------------------------------------------
consensus_6626#2 ------------------------------------------------------------
consensus_6626#0 CCGGTCGTACCGTGCGCCCCGAGGTTGCCCTGTTAGAACGCCCTATATACAAACAAATCG 60
consensus_6626#1 ------------------------------------------------------------
consensus_6626#2 ------------------------------------------------------------
consensus_6626#0 TCCGAAGGGACAACAGCGCTACAACCACGCAACACGCAAACGAACACCCGGTCGGCACAC 120
consensus_6626#1 --CCGCGGACGCGTGGGCGGACGCGTGGGCTCGAGGCGGAAGTACCTCCATCAGTGGTGT 58
consensus_6626#2 ------------------------------------------GATCGCCGAGGGTT-TGT 17
consensus_6626#0 TGCACTACACAGTTGCGCATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGT 180
* * ** ** ***
consensus_6626#1 ACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACA 118
consensus_6626#2 AC-ACTGCACA-TACAATTAGTCAGTGATCA-CGCTC-TGCTGGAA-GGTGTGTGACACA 72
consensus_6626#0 ACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACA 240
** ******** ******************* ***** ******** *************
consensus_6626#1 ACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAA 178
consensus_6626#2 ACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAA-GAAAAAAAACAAACC-AAGTGCAN 130
consensus_6626#0 ACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAA 300
*********************************** *************** *******
consensus_6626#1 AAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCA 238
consensus_6626#2 AAAGGGTATTAAA-TATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCA 189
consensus_6626#0 AAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCA 360
******* * *** **** **** *********************** ************
consensus_6626#1 CGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGA 298
consensus_6626#2 CGTGGTCGGCC-ACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGA 248
consensus_6626#0 CGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGA 420
********** ************************** *********************
consensus_6626#1 AGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTG 358
consensus_6626#2 AGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTG 308
consensus_6626#0 AGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTG 480
************************************************************
consensus_6626#1 TGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTT 418
consensus_6626#2 TGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTT 368
consensus_6626#0 TGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTT 540
************************************************************
consensus_6626#1 ACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAA-GAAAGTGG 477
consensus_6626#2 ACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAACGAAAGTGG 428
consensus_6626#0 ACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAA-GAAAGTGG 599
******************************* **** ** ****** ** ********
consensus_6626#1 -CACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAA-CGAAA 535
consensus_6626#2 GCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAA-CGAAA 487
consensus_6626#0 -CACAGATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAAACGAAA 658
**** ************************************************ *****
consensus_6626#1 AAACATAAATCCAAGAACCATCGTCATCATTTCCGCCAAAAGTGCAAATAACAGCGATTC 595
consensus_6626#2 AAACATAAATCCAAGAACCATCGTCAT--------------------------------- 514
consensus_6626#0 AAACATAAATCCAAGAACCATCGTCATCATTTCCGCTAAAAGTGCAAATAACAGCGATTC 718
***************************
consensus_6626#1 TCTCGATTGATACAGCCAACAGCCTAT---TGGCTTTTGCAGTGGCAAACAGTGTGCGCG 652
consensus_6626#2 ------------------------------------------------------------
consensus_6626#0 TCTCGATTGATACAGCCAACAAACAGCCTATTGCTTTTGCAGTGGCAAACAGTGTGCGCA 778
consensus_6626#1 TATGTAACGTGCTGTAACACGGCCTACT---------------------------- 680
consensus_6626#2 --------------------------------------------------------
consensus_6626#0 TATGTAACGTGCTATAACACGGCCTACTGTGTCTGGGTGACGCTGTAAGATCACGT 834
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||