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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1141 fasta sequence
[GGATGCTCGAGGCAGAATGCCCGAGGTTTTTATGTGATGTCATTTCAATCGCCCCGCTCCGAGCGCTTTATACCCGTGCACACCCCCATACAGCAAACAAATTCGGCCGCTAACAATAGAATTAATTCAGCAGAGCATTCATGAGCGAGCAAACAGCTCACAAAGTTTTCTTGCAATTAGTGCAACTAGACGAACCGGAGTCCAAAACTCACCCTGCTAAGCGAAACTTTCTGTATTTTAGCAATGGCAGCGATTGAGACCAATTTAACCTGGCGGTCAGCTGTGAGCACTCATCTCAGAGCATCCTGCAGTGGCGAGGCATCAGCATAGGTAGTAGTAATGGTACGTGAGTTAGTTGTAACATGCACATTCACTCGCCTGTGATGTGTCTAAACCTGGACCTGGCAGTGAATCGTCTTCTNTTTCCATTCCCTCCTGCTCNNTGCNNCTTGATTTTGCACCTGTGCCTGTGTGTGACTTCNTGTTGTGCTGCCTCCGTACACGCCATTGNACGCTACTAGGTCTAGGCTATCCTCCTAATACGTAACTATAATGGACCGCGCTNATCAANGCCGGTTGGTACCGCGGCTANCCGCGCGCATTGACTNGATNNTCCCCANTNAACACTCGNACACNNTCGGAACCCCCAAACTGGGCCTAACGTTAGCCNTTGANTNNCTTTATCGTNAGCGNTTCTTANCAACTGGGTTACAGGCCCCAANCAGCATCANCATCCACTCNNACCNANNCANCACANACAAAAGAATAANAATAATNGAAAACCAGTACTAGTATTCTGACNGNATACATAGANAGCCGCATAAGAGTGCCACTATTGGGATTCTGGCCCCGCGCCCNCCAGGTCNNNAANNGNTGCANTATTAAATTTNCCGCNCNCTTGATTCTAAAGTCTGTTNGAANGGGTGTGNTGTTAACAATCACCNNTTGCATCANAAACNTANCCTTATTACTGGCGGCACCCAACACNTNGGCGCANCCANCCCAGGTACCACCGCGACTAAAATGNATTAGNACNAATAATTTGATATTATGATGAATGAGTAACAGCATTTNGGGATGANNAAACAAANGATATNCCNNCCCTACTNTGGCCACGACTATCAACGACCCGANAACAACC]
[+] EMBL AL931329 [GGATGCTCGAGGCAGAATGCCCGAGGTTTTTATGTGATGTCATTTCAATCGCCCCGCTCCGAGCGCTTTATACCCGTGCACACCCCCATACAGCAAACAAATTCGGCCGCTAACAATAGAATTAATTCAGCAGAGCATTCATGAGCGAGCAAACAGCTCACAAAGTTTTCTTGCAATTAGTGCAACTAGACGAACCGGAGTCCAAAACTCACCCTGCTAAGCGAAACTTTCTGTATTTTAGCAATGGCAGCGATTGAGACCAATTTAACCTGGCGGTCAGCTGTGAGCACTCATCTCAGAGCATCCTGCAGTGGCGAGGCATCAGCATAGGTAGTAGTAATGGTACGTGAGTTAGTTGTAACATGCACATTCACTCGCCTGTGATGTGTCTAAACCTGGACCTGGCAGTGAATCGTCTTCTNTTTCCATTCCCTCCTGCTCNNTGCNNCTTGATTTTGCACCTGTGCCTGTGTGTGACTTCNTGTTGTGCTGCCTCCGTACACGCCATTGNACGCTACTAGGTCTAGGCTATCCTCCTAATACGTAACTATAATGGACCGCGCTNATCAANGCCGGTTGGTACCGCGGCTANCCGCGCGCATTGACTNGATNNTCCCCANTNAACACTCGNACACNNTCGGAACCCCCAAACTGGGCCTAACGTTAGCCNTTGANTNNCTTTATCGTNAGCGNTTCTTANCAACTGGGTTACAGGCCCCAANCAGCATCANCATCCACTCNNACCNANNCANCACANACAAAAGAATAANAATAATNGAAAACCAGTACTAGTATTCTGACNGNATACATAGANAGCCGCATAAGAGTGCCACTATTGGGATTCTGGCCCCGCGCCCNCCAGGTCNNNAANNGNTGCANTATTAAATTTNCCGCNCNCTTGATTCTAAAGTCTGTTNGAANGGGTGTGNTGTTAACAATCACCNNTTGCATCANAAACNTANCCTTATTACTGGCGGCACCCAACACNTNGGCGCANCCANCCCAGGTACCACCGCGACTAAAATGNATTAGNACNAATAATTTGATATTATGATGAATGAGTAACAGCATTTNGGGATGANNAAACAAANGATATNCCNNCCCTACTNTGGCCACGACTATCAACGACCCGANAACAACC]
consensusID : consensus_6628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 885 fasta sequence
[CACACCGACCATGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCGCAACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCAAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCGTCACTGCGTAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCGGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTTCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTT]
[+] EMBL CNS09KSN [CACACCGACCATGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCGCAACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCAAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCGTCACTGCGTAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCGGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTTCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTT]
consensusID : consensus_6628#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence
[CCGCCCACGCGTCCGGAAAACCCTGTAATGTTTGACGCAGAAAGTACAAATACAATGTAAAAGATAGTTATAATATATTTTACAAATCATTCCGTTGCAAATTCACATCAATGTTAACAAGTATAAAAATCATCAAATGACGATGTATTAGATGATTGGCGGTGTTCTCGTAAATCCAGCGTTTGCCTATTCCGTTGTTCTCGTAAATTTAAATTCATCGCAAGTTGATTATGATTTAGGAGTATTTTCCCATCAGACATTAAGTGCCATCAAGTACCAGATTATACCTCATTTACTTTTTACAAAAGTTCTAGCATACATCAAAACCAACACATAACTAAGCGAATATGGAAGTAAGTTGCACGAGCCACATGAACTGTTGTTCATAAATACTGATAGAGTTTCAAAAATCAATTAAAGTATAGGGAAAATAGTAATGTGATAATGAAAGCAATTCGGTTCAAACAAGAAGTTTGTGAATCAATATTGAAGATTAGAAAATAATTAAGTAATTAAGTAAAGATCATGTTGCCGGTGATACAGTTTGCAGCAGAAAGGCCTGATAGAAACTTGTTCAAATAACAACCGTACACATTTTGAGCAGAGAAAATCCATCATCGATCTCCCGGATTTGTGCTAGGTTTCCCAACTGATTTCTCTATAGATTCTGACCATGTTTTTAAGTGAAACATAACATTAGAGTCTTATACAATAGAGACATATATAATGGGCCGGTCCCAGTCGTCAACTCGTACGTTTCAATGGTATGCTT]
[+] EMBL BM634595 [CCGCCCACGCGTCCGGAAAACCCTGTAATGTTTGACGCAGAAAGTACAAATACAATGTAAAAGATAGTTATAATATATTTTACAAATCATTCCGTTGCAAATTCACATCAATGTTAACAAGTATAAAAATCATCAAATGACGATGTATTAGATGATTGGCGGTGTTCTCGTAAATCCAGCGTTTGCCTATTCCGTTGTTCTCGTAAATTTAAATTCATCGCAAGTTGATTATGATTTAGGAGTATTTTCCCATCAGACATTAAGTGCCATCAAGTACCAGATTATACCTCATTTACTTTTTACAAAAGTTCTAGCATACATCAAAACCAACACATAACTAAGCGAATATGGAAGTAAGTTGCACGAGCCACATGAACTGTTGTTCATAAATACTGATAGAGTTTCAAAAATCAATTAAAGTATAGGGAAAATAGTAATGTGATAATGAAAGCAATTCGGTTCAAACAAGAAGTTTGTGAATCAATATTGAAGATTAGAAAATAATTAAGTAATTAAGTAAAGATCATGTTGCCGGTGATACAGTTTGCAGCAGAAAGGCCTGATAGAAACTTGTTCAAATAACAACCGTACACATTTTGAGCAGAGAAAATCCATCATCGATCTCCCGGATTTGTGCTAGGTTTCCCAACTGATTTCTCTATAGATTCTGACCATGTTTTTAAGTGAAACATAACATTA ]
[+] EMBL BX618592 [ CGTAAATCCAGCGTTTGCCTATTCCGTTGTTCTCGTAAATTTAAATTCATCGCAAGTTGATTATGATTTAGGAGTATTTTCCCATCAGACATTAAGTGCCATCAAGTACCAGATTATACCTCATTTACTTTTTACAAATGTTCTAGCATACATCAAAACCAACACATAACTAAGCGAATATGGATGTAAGTTGCACGAGCCACATGAACTGTTGTTCATAAATACTGATAGAGTTTCAAAAATCAATTGAAGTATAGGGAAAATAGTAATGTGATAATGAAAGCAATTCGGTTCAAACAAGAAGTTTGTAAATCAATATTGAAGATTAGAAAATAATTAAGTA T CAAAGATCATGTTGCCGGTGATACAGTTTGCAGCAGATAGGCCTGATAGAAACTTGTTGAAATAACAACCGTACACATTTTGAGCAGAGAAAAACCATCATCGATCTCCCGGATTTGTGCTAGGTTTCCCAACTGATTTCTCTATAGATTCTGACCATGTTTTTAAGTGAAACATAACATTAGAGTCTTATACAATAGAGACATATATAATGGGCCGGTCCCAGTCGTCAACTCGTACGTTTCAATGGTATGCTT]
consensusID : consensus_6628#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence
[CCGCGGACGCGTGGGTTTTGCATATGATCGCTCAACTGCAAAACATTTAGGTTCCACCTACTTCGTAATATCGAAACGTATCTTGAAGCAGGTGGAACCTAAATGTTTTGCATATGATCGCTCAACTGCTGGAGAGTTCAGCTGCTATGATCCAAAATCAATTGTTTTGTTTGAATAATAAATTGAGAGCTTTTGC]
[+] EMBL BM607366 [CCGCGGACGCGTGGGTTTTGCATATGATCGCTCAACTGCAAAACATTTAGGTTCCACCTACTTCGTAATATCGAAACGTATCTTGAAGCAGGTGGAACCTAAATGTTTTGCATATGATCGCTCAACTGCTGGAGAGTTCAGCTGCTATGATCCAAAATCAATTGTTTTGTTTGAATAATAAATTGAGAGCTTTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6628#0 GGATGCTCGAGGCAGAATGCCCGAGGTTTTTATGTGATGTCATTTCAATCGCCCCGCTCC 60
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 ------------------------------------------------------------
consensus_6628#1 ------------------------------------------------------------
consensus_6628#0 GAGCGCTTTATACCCGTGCACACCCCCATACAGCAAACAAATTCGGCCGCTAACAATAGA 120
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 ------------------------------------------------------------
consensus_6628#1 ------------------------------------------------------------
consensus_6628#0 ATTAATTCAGCAGAGCATTCATGAGCGAGCAAACAGCTCACAAAGTTTTCTTGCAATTAG 180
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 ------------------------------------------------------------
consensus_6628#1 ------------------------------------------------------------
consensus_6628#0 TGCAACTAGACGAACCGGAGTCCAAAACTCACCCTGCTAAGCGAAACTTTCTGTATTTTA 240
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 ------------------------------------------------------------
consensus_6628#1 -----------------------------------------------------CACACCG 7
consensus_6628#0 GCAATGGCAGCGATTGAGACCAATTTAACCTGGCGGTCAGCTGTGAGCACTCATCTCAGA 300
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 ------------------------------------------------------------
consensus_6628#1 ACCATGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCG 67
consensus_6628#0 GCATCCTGCAGTGGCGAGGCATCAGCATAGGTAGTAGTAATGGTACGTGAGTTAGTTGTA 360
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 ----------------------------------------------------------CC 2
consensus_6628#1 CAACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCAAACGAA 127
consensus_6628#0 ACATGCACATTCACTCGCCTGTGATGTGTCTAAACCTGGACCTGGCAGTGAATCGTCTTC 420
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 GCCCACGCGTCCGGAAAACCCTGTAATGTTTGACGCAGAAAGTACAAATACAATGTAAAA 62
consensus_6628#1 GCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGC 187
consensus_6628#0 TNTTTCCATTCCCTCCTGCTCNNTGCNNCTTGATTTTGCACCTGTGCCTGTGTGTGACTT 480
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 GATAGTTATAATATATTTTACAAATCATTCCG---TTGCAAATTCACATCAATGTTAACA 119
consensus_6628#1 TGCCCTCGGAGAAG---GAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGG 244
consensus_6628#0 CNTGTTGTGCTGCCTCCGTACACGCCATTGNACGCTACTAGGTCTAGGCTATCCTCCTAA 540
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 AGTATAAAAATCAT------CAAATGACGATGTATTAGATGATTGGCGGTGTTCTCGTAA 173
consensus_6628#1 ACCACATCGTGGCCA--AGTCGCGCTTCTGGTACTTCCTGCGTCACTGCGTAAGTTCAAG 302
consensus_6628#0 TACGTAACTATAATGGACCGCGCTNATCAANGCCGGTTGGTACCGCGGCTANCCGCGCGC 600
consensus_6628#3 ------------------------------------------CCGCGG--ACGCGTGGGT 16
consensus_6628#2 -ATCCAGCGTTTGCCTATTCCGTTGTTCTCGTAAATTTAAATTCATCGCAAGTTGATTAT 232
consensus_6628#1 AAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGC-TGAAGGT 361
* *
consensus_6628#0 ATTG-ACTNGATNNTCC--CCANTNAAC-ACTCGNACACNNTCGGAACCCCCAA--ACTG 654
consensus_6628#3 TTTGCATATGATCGCTCAACTGCAAAAC-ATTTAGGTTCCACCTACTTCGTAAT--ATCG 73
consensus_6628#2 GATT--TAGGAGTATTTTCCCATCAGAC-ATT-AAGTGCCATCAAG--TACCAG--ATTA 284
consensus_6628#1 GAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCG 421
** * * * * *
consensus_6628#0 GGCCTAACGTTAGCCNTTGANTNNCTTTATCGTNAGCGNTTCTTANCAACTGGGTTACAG 714
consensus_6628#3 A----AACGT--ATCTTGAAGCAGGTGGAACCTAAATGTTTTGCATATGATCGCTCAACT 127
consensus_6628#2 TACCTCATTTACTTTTTACAAAAGTTCTAGCATACATCAAAACCAACACATAACTAAGCG 344
consensus_6628#1 CGAGTACCGT-GACCTGACCGTTGGCGGTGCCGTCACGCAGTCTAC--AGTGACATGGCC 478
* * * *
consensus_6628#0 GCCCCAANCAGCATCANCATCCACTCNNACCNANNCANCACANACAAAAGAATAANAATA 774
consensus_6628#3 GCTGGAGAGTTCAGCTGCTATGATCCAAAATCAATTGTTTTGTTT----GAATAATAA-- 181
consensus_6628#2 AATATGGAAGTAAGTTGCA-CGAGCCACA-TGAACTGTTGTTCATAAATACTGATAGAGT 402
consensus_6628#1 TCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCG 538
* *
consensus_6628#0 ATNGAAAACCAGTACTAGTATTCTGACNGNATACATAGANAGCCGCATAAGAGT--GCCA 832
consensus_6628#3 ATTGAGAGCTTTTGC--------------------------------------------- 196
consensus_6628#2 TTCAAAAATCAATTAAAGTATAGGGAAAATAGTAATGTGATAATGAAAGCAATTCGGTTC 462
consensus_6628#1 TCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTG 598
* *
consensus_6628#0 CTATTGGGATTCTGGCCCCGCGCCCNCCAGGTCNNNAANNGNTGCANTATTAAA------ 886
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 AAACAAGAAGTTTGTGAATCAATATTGAAGATTAGAAAATAATTAAGTAATTAA------ 516
consensus_6628#1 GTGCGGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACC 658
consensus_6628#0 -TTTNCCGCNCNCTTGATTCTAAAGTCTGTTNGAANGGGTGTGNTGTTAACAATCACCNN 945
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 -GTAAAGATCATGTTGCCGGTGATA-CAGTTTGCAGCAGAAAGGCCTGATAGAAACTTGT 574
consensus_6628#1 TTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCAT 718
consensus_6628#0 TTGCATCANAAACNTANCCTTATT-ACTGGCGGCACCCAACACNTNGGCGCANCCANCCC 1004
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 TCAAATAACAACCGTACACATTTTGAGCAGAGAAAATCCATCATCGATCTCCCGGATTTG 634
consensus_6628#1 ACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTG 778
consensus_6628#0 AGGTACCACCGCGACTAAAATGNATTAGNACNAATAATTTGATATTATGATGAATGAGTA 1064
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 TGCTAGGTTTCCCAACTGATTTCTCTATAGATTCTGACCATGTTTTTAAGTGAA-ACATA 693
consensus_6628#1 GAGTGAGTTCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACG 838
consensus_6628#0 ACAGCATTTNGGGATGANNAAACAAANGATATNCCNNCCCTACTNTGGCCACGACTATCA 1124
consensus_6628#3 ------------------------------------------------------------
consensus_6628#2 ACATTAGAGTCTTATACAATAGAGACATATATAATGGGCCGGTCCCAGTCGTCAACTCGT 753
consensus_6628#1 GTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTT------------- 885
consensus_6628#0 ACGACCCGANAACAACC-- 1141
consensus_6628#3 -------------------
consensus_6628#2 ACGTTTCAATGGTATGCTT 772
consensus_6628#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||