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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 924 fasta sequence
[CAGAATCCCCCCGAGGTTTGGTAGCTGGTTAGCCATCGTCTTCCTGCTCGTTTGGCAAGCAGAATGAGATGGTTGTGTGCTGCACGGCTGAGAATATGTTACGAGACGAGGAACATCGTGAGCAACTATCTGCAAGCGATCGAAGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTTAGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAACTATCCGTACATGGCTTTTATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTAACTACTGCTTCTTGCTATCAACAGTATATCCCAGGATAACGTTACAGTTGTGTNGGGCAATAGTACGCAGCAAACTATCGCCTATTTCAGCGAACATTCATTGCACCCGGAATACAGCAACGTATCGACACGAGTCTCTCAATCTGATACTCTTGAAGCTAGCTACGGTGGCTACGGTCCAACAATGAANACTATCCCTGGCATGTNCTATGGCATAATCAGACACAATACACCTTTGAGATTNGGCAGGAGCGTGTACATTGCANGGANAAAGAANACAGTAAAAGCATCATCAGAACGGTTATCCACTGTACAACGAGGCATTGCCTTGCAGCAATGGATCCCAGGNTTCTAATGTGACTGGCCTGCCAGCTCAGTGTCGTGGAGCACGACAGAAAGTACTATCNAGCCGTACTGTATTCGTTCCAAGAGGATTGCCGGCCAAAATGTACTAGGTAAACCCATTANTTGCACAGGGAGTCCAACGAATATCAAGTGACCTATCTGGTGNGGACATGTCANTTGGGTATCCGGGNGTCCGGTATAGCTACGACCAAANACCGAATGGGCGANTGAAGCGACGAGACTANGAAACACCACACTTAATACCCCCTATAATNCAGGA]
[+] EMBL AL697298 [CAGAATCCCCCCGAGGTTTGGTAGCTGGTTAGCCATCGTCTTCCTGCTCGTTTGGCAAGCAGAATGAGATGGTTGTGTGCTGCACGGCTGAGAATATGTTACGAGACGAGGAACATCGTGAGCAACTATCTGCAAGCGATCGAAGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTTAGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAACTATCCGTACATGGCTTTTATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTAACTACTGCTTCTTGCTATCAACAGTATATCCCAGGATAACGTTACAGTTGTGTNGGGCAATAGTACGCAGCAAACTATCGCCTATTTCAGCGAACATTCATTGCACCCGGAATACAGCAACGTATCGACACGAGTCTCTCAATCTGATACTCTTGAAGCTAGCTACGGTGGCTACGGTCCAACAATGAANACTATCCCTGGCATGTNCTATGGCATAATCAGACACAATACACCTTTGAGATTNGGCAGGAGCGTGTACATTGCANGGANAAAGAANACAGTAAAAGCATCATCAGAACGGTTATCCACTGTACAACGAGGCATTGCCTTGCAGCAATGGATCCCAGGNTTCTAATGTGACTGGCCTGCCAGCTCAGTGTCGTGGAGCACGACAGAAAGTACTATCNAGCCGTACTGTATTCGTTCCAAGAGGATTGCCGGCCAAAATGTACTAGGTAAACCCATTANTTGCACAGGGAGTCCAACGAATATCAAGTGACCTATCTGGTGNGGACATGTCANTTGGGTATCCGGGNGTCCGGTATAGCTACGACCAAANACCGAATGGGCGANTGAAGCGACGAGACTANGAAACACCACACTTAATACCCCCTATAATNCAGGA]
consensusID : consensus_6647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 774 fasta sequence
[CGGCTGAGAATGTGTTACTAGACGAGGAACATCGTGAGCAACTATCGCAAGCGATCGAGGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTTAGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAACCTATCCGTACATGGCTTTTATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTAACTACTGCTTCTTGCTATCAAAGCATAGCCCAGGATAACGTTACGGTTGTGTTGGGCAATAGTACGCAGCAAACTATCGCTATCCAGCGCACATTCATGCACCCGGAGTACAGCAACGTATCGACAGAGTTTAATCTGATACTGTTGAAGCTAGCTACGGTGGCTACGGTCAACAATGAAACTATCCCTGCATGTTTATGGCATAATCAGACACATACACCTTTGAGATTGGAGGAGGTGTACATTGAAGGAAAAGAAAAAGTAAAGCATCATCAGAACGGTTTTCCACTGTACAACGAGGCATGCCTGAGAATGGATCCCGGTTCTAATGTGACCGGCCTGCAGTTGTGTGTGGAGCACGACAGAAAGTACTATCAGCGTTCTGTATTCTTCCAAGAGGATGCCGGCAATGTCCTAGTAAGTCATTTTGCACAGGGAGTCAACGAATATCAAGTGACCTATCTGGTGGGAATGTATGGATCGGGTCGTATAGCTCGACNAACCGATGGCGACGAGGAGGATAGAAACACATTTTACCATATTTACCAACGAATTAGTG]
[+] EMBL BX628346 [CGGCTGAGAATGTGTTACTAGACGAGGAACATCGTGAGCAACTATCGCAAGCGATCGAGGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTTAGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAACCTATCCGTACATGGCTTTTATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTAACTACTGCTTCTTGCTATCAAAGCATAGCCCAGGATAACGTTACGGTTGTGTTGGGCAATAGTACGCTGCAAACTATCGCTATCCAGCGCACATTCATGCACCCGGAGTACAGCAACGTATCGACAGAGTTTAATCTGATACTGTTGAAGCTAGCTACGGTGGCTACGGTCAACAATGAAACTATCCCTGCATGTTTATGGCATAATCAGACACATACACCTTTGAGATTGGAGGAGGTGTACATTGAAGGAAAAGAAAAAGTAAAGCATCATCAGAACGGTTTTCCACTGTACAACGAGGCATGCCTGAGAATGGATCCCGGTTCTAATGTGACCGGCCTGCAGTTGTGTGTGGAGCACGACAGAAAGTACTATCAGCGTTCTGTATTCTTCCAAGAGGATGCCGGCAATGTCCTAGTAAGTCATTTTGCACAGGGAGTCAACGAATATCAAGTGACCTATCTGGTGGGAATGTATGGATCGGGTCGTATAGCTCGACNAACCGATGGCGACGAGGAGGATAGAAACACATTTTACCATATTTACCAACGAATTAGTG]
[+] EMBL BX603805 [ ACGCTGGTAGCTAAGCAATTCGTCCTAACTACTGCTTCTTGCTATCAAAGCATAGCCCAGGATAACGTTACGGTTGTGTTGGGCAATAGTACGCAGCAAACTATCGCTATCCAGCGCACATTCATGCACCCGGAGTACAGCAACGTATCGACAGAGTTTAATCTGATACTGTTGAAGCTATCTACGGTGGCTACGGTCAACAATGAAACTATCCCTGCATGTTTATGGCATAACCAGACACATGCATCTTTGAGATTGGAGGAGGTGTACATTGAAGGAAAAGAAAAAGTAAAGCATCATCTAAACGGTTTTCCACTGTACAACGAGGCATGCCTGAGAATGGATC ]
[+] EMBL BX613526 [ TGTGTTGGGCAATAGTACGCAGCAAACTATCGCTATTCAGCGAACATTCATGCACCCGGAATACAGCAACGTATCGACAGAGTTTAATCTGATACTCTTGAAGCTAGCTACGGTGGCTACGGTCAACAATGAAACTATCCCTGCATGTTTATGGCATAATCAGACACATACACCTTTGAGATTGGAGGAGGTGTACATTGAAGGAAAAGAAAAAGTAAAGCATCATCAGAACGGTTTTCCACTGTACAACGAGGCATGCCTGAGAATGGATCCCGGTTCTAATGTGACCGGCCTGCAGTTGTGTGTGGAGCACGACAGAAAGTACTATCAGCGTTCTGTATTCTTCCAAGAGGATG ]
consensusID : consensus_6647#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence
[CCCAGGAGAACGTTACAGTTGGGTGGGGCAATAGTACGCAGCAAACTATCGCTATGCAGCGAACATTCAGGCACCCGGAATACAGCAACGTATCGACAGAGTGAAATCTGATACTCGTGAAGCTAGCTACGGGGGCGACGGTCAACAATGAA]
[+] EMBL BX609639 [CCCAGGAGAACGTTACAGTTGGGTGGGGCAATAGTACGCAGCAAACTATCGCTATGCAGCGAACATTCAGGCACCCGGAATACAGCAACGTATCGACAGAGTGAAATCTGATACTCGTGAAGCTAGCTACGGGGGCGACGGTCAACAATGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6647#0 CAGAATCCCCCCGAGGTTTGGTAGCTGGTTAGCCATCGTCTTCCTGCTCGTTTGGCAAGC 60
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 ------------------------------------------------------------
consensus_6647#0 AGAATGAGATGGTTGTGTGCTGCACGGCTGAGAATATGTTACGAGACGAGGAACATCGTG 120
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 ------------------------CGGCTGAGAATGTGTTACTAGACGAGGAACATCGTG 36
consensus_6647#0 AGCAACTATCTGCAAGCGATCGAAGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTT 180
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 AGCAACTATC-GCAAGCGATCGAGGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTT 95
consensus_6647#0 AGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAAC-TATCCGTACATGGCTTTT 239
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 AGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAACCTATCCGTACATGGCTTTT 155
consensus_6647#0 ATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTA 299
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 ATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTA 215
consensus_6647#0 ACTACTGCTTCTTGCTATCAACAGTATATCCCAGGATAACGTTACAGTTGTGTNGGGCAA 359
consensus_6647#2 -----------------------------CCCAGGAGAACGTTACAGTTGGGTGGGGCAA 31
consensus_6647#1 ACTACTGCTTCTTGCTATCAA-AGCATAGCCCAGGATAACGTTACGGTTGTGTTGGGCAA 274
******* ******** **** ** ******
consensus_6647#0 TAGTACGCAGCAAACTATCGCCTATTTCAGCGAACATTCATTGCACCCGGAATACAGCAA 419
consensus_6647#2 TAGTACGCAGCAAACTATCGCTA--TGCAGCGAACATTCAG-GCACCCGGAATACAGCAA 88
consensus_6647#1 TAGTACGCAGCAAACTATCGCTA--TCCAGCGCACATTCAT-GCACCCGGAGTACAGCAA 331
********************* * ***** ******* ********* ********
consensus_6647#0 CGTATCGACACGAGTCTCTCAATCTGATACTCTTGAAGCTAGCTACGGTGGCTACGGTCC 479
consensus_6647#2 CGTATCGACA-GAGTGA---AATCTGATACTCGTGAAGCTAGCTACGGGGGCGACGGTC- 143
consensus_6647#1 CGTATCGACA-GAGTTT---AATCTGATACTGTTGAAGCTAGCTACGGTGGCTACGGTC- 386
********** **** *********** *************** *** ******
consensus_6647#0 AACAATGAANACTATCCCTGGCATGTNCTATGGCATAATCAGACACAATACACCTTTGAG 539
consensus_6647#2 AACAATGAA--------------------------------------------------- 152
consensus_6647#1 AACAATGAAA-CTATCCCTG-CATGTT-TATGGCATAATCAGACACA-TACACCTTTGAG 442
*********
consensus_6647#0 ATTNGGCAGGAGCGTGTACATTGCANGGANAAAGAANACAGTAAAAGCATCATCAGAACG 599
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 ATTGG--AGGAG-GTGTACATTGAAGGAAAAGAAAAAGTA----AAGCATCATCAGAACG 495
consensus_6647#0 GTTATCCACTGTACAACGAGGCATTGCCTTGCAGCAATGGATCCCAGGNTTCTAATGTGA 659
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 GTTTTCCACTGTACAACGAGGCAT-GCCT---GAGAATGGATCCC--GGTTCTAATGTGA 549
consensus_6647#0 CTGGCCTGCCAGCTCAGTGTCGTGGAGCACGACAGAAAGTACTATCNAGCCGTACTGTAT 719
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 CCGGCCTGC-AGTT--GTGT-GTGGAGCACGACAGAAAGTACTATCAG--CGTTCTGTAT 603
consensus_6647#0 TCGTTCCAAGAGGATTGCCGGCCAAAATGTACTAGGTAAACCCATTANTTGCACAGGGAG 779
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 TC-TTCCAAGAGGAT-GCCGGC---AATGTCCTAGT--AAGTCATT--TTGCACAGGGAG 654
consensus_6647#0 TCCAACGAATATCAAGTGACCTATCTGGTGNGGACATGTCANTTGGGTATCCGGGNGTCC 839
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 TC-AACGAATATCAAGTGACCTATCTGGTGGGAATGTATGGATCGGGTC----------- 702
consensus_6647#0 GGTATAGCTACGACCAAANACCGAATGGGCGANTGAAGCGACGAGACTANGAAACACCAC 899
consensus_6647#2 ------------------------------------------------------------
consensus_6647#1 -GTATAGCT-CGACNAA---CCGAT--GGCGACGAGGAGGATAGAAACACATTTTACCAT 755
consensus_6647#0 ACTTAATACCCCCTATAATNCAGGA 924
consensus_6647#2 -------------------------
consensus_6647#1 ATTTACCAACGAAT-TAGTG----- 774
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||