cluster # 6655

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Anopheles gambiae
cluster # 6655 cluster # 6655 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6655#0 length = 916 sequences # 3

consensus_6655#1 length = 694 sequences # 1
consensus_6655#2 length = 547 sequences # 1

consensusID : consensus_6655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 916
fasta sequence

                              [GAAAAGTCTCACAAAATCCGTGTACACGTGATACCCTTCCTGTGTGTCGATCCTGAATTTGGTGATTCTGTGTTTGTTGTGCTGTGGATTTTGTGCTTAAACTTGGTCCAAATCGATTTTCTATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTACAACGCCCCAAACGCATCGTACAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCGTCTATGCACAGCACCATCAGCTATACGCCGCCCCCGGGAATGGGGGTGCGGGCAGTAGCAGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGCAATGCGCCCCCCAACTTGAGGCTGAACCCGACCAGCATACGGCAGATGCAGCATCAGTATCTTCATCATACAGAATGTTTGGACTCGTCAACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCACCCGTACAATCCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCGCAAACGGATGATGCGTTCCGCCCCGAATGGCAGCATTAATTCGGCGTTCGATGAGCTGCGCGTGCACGTGCCAACGTTTCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGCGGCTAGCGATCGCGTACATTGCACTGCTGCGCGAGGTGCTCGAAGCGGACTACGATCCGCTCACGTACGTGGAAAAGTGTCTGCGGGGGGAAATAAAGGCCGACCGGGCACACTGGAACACGAGCGATTTAACGGCACGACTGTCCTGGATCAATTGGGAAAACTTGGGCGTACATCCGGGCAGACGTACCATCCTGACGTCGCTGGCACTCGGATCGTCGGAGAGTATGGGTGCGTGTGGACCGCCGCCACATTTGATCTAGATTGCAA]

[+] EMBL BX618619             [GAAAAGTCTCACAAAATCCGTGTACACGTGATACCCTTCCTGTGTGTCGATCCTGAATTTGGTGATTCTGTGTTTGTTGTGCTGTGGATTTTGTGCTTAAACTTGGTCCAAATCGATTTTCTATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTACAACGCCCCAAACGCATCGTACAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCGTCTATGCACAGCACCATCAGCTATACGCCGCCCCCGGGAATGGGGGTGCGGGCAGTAGCAGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGCAATGCGCCCCCCAACTTGAGGCTGAACCCGACCAGCATACGGCAGATGCAGCATCAGTATCTTCATCATACAGAATGTTTGGACTCGTCAACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCACCCGTACAATCCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCGCAAACGGATGATGCGTTCCGCCCCGAATGGCAGCATTAATTCGGCGTTCGATGAGCTGCGCGTGCACGTGCCAACGTTTCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGCGGCTAGCGATCGCGTACATTGCACTGCTGCGCGAGGTGCTCGAAGCGGACTACG                                                                                                                                                                                                                        ]
[+] EMBL BX614521             [                                                                                                                                                                                                                                                            CACCATCAGCTAAACACGGCCCCCGGGAATGGAGGTGCGGGTAGTAGCAGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGTAATGCCCCCCCCAACTTGAGGCTGAACCCGACCAGCATAAGGCAGATGCAGCATCAGTATCTTCATCATACAGAATGCTTGGACTCGTCCACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCACCCGTACAATCCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCGCAAACGGATGATGCGTTCCGCCCCGAATGGCAGCATTAATTCGGCGTTCGATGAGCTGCGAGTGCACGTGCCAACGTTTCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGCGGCTAGCGATCGCG                                                                                                                                                                                                                                                                ]
[+] EMBL BX615259             [                                                                                                                                                                                                                                                                                                                                                           CCCCAACTTGAGGCTGAACCCGACCAGCTTACGGCAGATGCAGCATCAGTATCTTCATCATACAGAATGTTTGGACTCGTCAACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCACCCGTACAATCCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCGCAAACGGATGATGCGTTCCGCCCCGAATG   GCATTAATTCGGCGTTCGATGAGCTGCGCGTGCACGTGCCAACGTTTCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGCGGCTAGCGATCGCGTACATTGCACTGCTGCGCGAGGTGCTCGAGGCGGACTACGATCCGCTCACGTACGTGGAAAAGTGTCTGCGGGGGGAAATAAAGGCCGACCGGGCACACTGGAACACGAGCGATTTAACGGCACGACTGTCCTGGATCAATTGGGAAAACTTGGGCGTACATCCGGGCAGACGTACCATCCTGACGTCGCTGGCACTCGGATCGTCGGAGAGTATGGGTGCGTGTGGACCGCCGCCACATTTGATCTAGATTGCAA]




>consensus_6655#0
GAAAAGTCTCACAAAATCCGTGTACACGTGATACCCTTCCTGTGTGTCGATCCTGAATTT
GGTGATTCTGTGTTTGTTGTGCTGTGGATTTTGTGCTTAAACTTGGTCCAAATCGATTTT
CTATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTACAACGCCCCAAACGCATCG
TACAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGC
GTCTATGCACAGCACCATCAGCTATACGCCGCCCCCGGGAATGGGGGTGCGGGCAGTAGC
AGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGCAATGCGCCCCCCAACTTGAGG
CTGAACCCGACCAGCATACGGCAGATGCAGCATCAGTATCTTCATCATACAGAATGTTTG
GACTCGTCAACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCACCCGTACAAT
CCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCGCAAACGGATG
ATGCGTTCCGCCCCGAATGGCAGCATTAATTCGGCGTTCGATGAGCTGCGCGTGCACGTG
CCAACGTTTCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGCGGCTAGCGATCGCG
TACATTGCACTGCTGCGCGAGGTGCTCGAAGCGGACTACGATCCGCTCACGTACGTGGAA
AAGTGTCTGCGGGGGGAAATAAAGGCCGACCGGGCACACTGGAACACGAGCGATTTAACG
GCACGACTGTCCTGGATCAATTGGGAAAACTTGGGCGTACATCCGGGCAGACGTACCATC
CTGACGTCGCTGGCACTCGGATCGTCGGAGAGTATGGGTGCGTGTGGACCGCCGCCACAT
TTGATCTAGATTGCAA

consensusID : consensus_6655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [AGATNGCCCAGGGTTATGAGTGCAAAATCTGTGAAATTCATAATGAATTCCCTAAAGCGATGGATAAAATTTGCCGCTCACAGTTACCGGATTCATCGTCTTCGCCGCACTGAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCTGTCTATGCACATGCACCATCAGCTAAACACTGGCCCCGGGAATGGATGTGTGCGGGTAGTAGCAGCGCTGGGACACAGTGCCGGACACAGTGTGCACACTGGTAATGCTGCCCCCCAACTTGAGGCTGAACCGACAGCATAAGGCAGATGCACGCATCAGTATCTTCATCATACANGAATGCTTGGACTCGNTCCCACCCCCCAACCACAAGANAGCCAGANACCCTGTCCNNACGANCACNCACTCGGGNCANCACCACCAACCCCNCGGTAGAAACAGACANNCCAACACNGACAACCANACNAAACNACNNNACANCAAACAACACNAAANACAACAAAAAAATAATANCAAAAAAAAACAAACCAACACCAGANNCACATACAANAATAATAAAACAAANCACCAANAANNTGATAAACTCACAAAACAAAANAAAACAAAACACCACACAATAAAANAACCAAAACCNAAAAATAAACATACTANACATTACTAATNCANACCAAACAATNNACCAAAC]

[+] EMBL AL695835             [AGATNGCCCAGGGTTATGAGTGCAAAATCTGTGAAATTCATAATGAATTCCCTAAAGCGATGGATAAAATTTGCCGCTCACAGTTACCGGATTCATCGTCTTCGCCGCACTGAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCTGTCTATGCACATGCACCATCAGCTAAACACTGGCCCCGGGAATGGATGTGTGCGGGTAGTAGCAGCGCTGGGACACAGTGCCGGACACAGTGTGCACACTGGTAATGCTGCCCCCCAACTTGAGGCTGAACCGACAGCATAAGGCAGATGCACGCATCAGTATCTTCATCATACANGAATGCTTGGACTCGNTCCCACCCCCCAACCACAAGANAGCCAGANACCCTGTCCNNACGANCACNCACTCGGGNCANCACCACCAACCCCNCGGTAGAAACAGACANNCCAACACNGACAACCANACNAAACNACNNNACANCAAACAACACNAAANACAACAAAAAAATAATANCAAAAAAAAACAAACCAACACCAGANNCACATACAANAATAATAAAACAAANCACCAANAANNTGATAAACTCACAAAACAAAANAAAACAAAACACCACACAATAAAANAACCAAAACCNAAAAATAAACATACTANACATTACTAATNCANACCAAACAATNNACCAAAC]




>consensus_6655#1
AGATNGCCCAGGGTTATGAGTGCAAAATCTGTGAAATTCATAATGAATTCCCTAAAGCGA
TGGATAAAATTTGCCGCTCACAGTTACCGGATTCATCGTCTTCGCCGCACTGAGTGGCAT
CGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCTGTCTATGCAC
ATGCACCATCAGCTAAACACTGGCCCCGGGAATGGATGTGTGCGGGTAGTAGCAGCGCTG
GGACACAGTGCCGGACACAGTGTGCACACTGGTAATGCTGCCCCCCAACTTGAGGCTGAA
CCGACAGCATAAGGCAGATGCACGCATCAGTATCTTCATCATACANGAATGCTTGGACTC
GNTCCCACCCCCCAACCACAAGANAGCCAGANACCCTGTCCNNACGANCACNCACTCGGG
NCANCACCACCAACCCCNCGGTAGAAACAGACANNCCAACACNGACAACCANACNAAACN
ACNNNACANCAAACAACACNAAANACAACAAAAAAATAATANCAAAAAAAAACAAACCAA
CACCAGANNCACATACAANAATAATAAAACAAANCACCAANAANNTGATAAACTCACAAA
ACAAAANAAAACAAAACACCACACAATAAAANAACCAAAACCNAAAAATAAACATACTAN
ACATTACTAATNCANACCAAACAATNNACCAAAC

consensusID : consensus_6655#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [GCTCACAGTTACCGGATTCATCGTCTTCGCCGCCACTGAGGTTATCATCGATATTGCTGTGATCCGTTTAGTTATTTTCTCGAAAAATATATCCCCAAAACTCCTCCCGTCGGTTTGTGATATTGTGTGGACTGTAAATGAGATTTTTCGATGATTTTTTAAACCGAAAAGTCTCACAAAATCCGTGTACACGTGATACTCTTCCTGTGTGTCGATCCTAAATTTGGTGATTCTGTGTTTGTTGTGCTGTGGATTTTGAGCGTTCTGTTTGTGCTTAAACTTGGTCCAAATCGATTTTCTATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTACAACGCCCCAAACGCATCGTACAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCGTCTATGCACAGCACCATCAGCTAAACACGGCCCCCGGGAATGGAGGTGCGGGTAGTAGCAGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGTAATGCGCCCCCCAACTTGAGGCTGAACCCG]

[+] EMBL BX612088             [GCTCACAGTTACCGGATTCATCGTCTTCGCCGCCACTGAGGTTATCATCGATATTGCTGTGATCCGTTTAGTTATTTTCTCGAAAAATATATCCCCAAAACTCCTCCCGTCGGTTTGTGATATTGTGTGGACTGTAAATGAGATTTTTCGATGATTTTTTAAACCGAAAAGTCTCACAAAATCCGTGTACACGTGATACTCTTCCTGTGTGTCGATCCTAAATTTGGTGATTCTGTGTTTGTTGTGCTGTGGATTTTGAGCGTTCTGTTTGTGCTTAAACTTGGTCCAAATCGATTTTCTATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTACAACGCCCCAAACGCATCGTACAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCGTCTATGCACAGCACCATCAGCTAAACACGGCCCCCGGGAATGGAGGTGCGGGTAGTAGCAGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGTAATGCGCCCCCCAACTTGAGGCTGAACCCG]




>consensus_6655#2
GCTCACAGTTACCGGATTCATCGTCTTCGCCGCCACTGAGGTTATCATCGATATTGCTGT
GATCCGTTTAGTTATTTTCTCGAAAAATATATCCCCAAAACTCCTCCCGTCGGTTTGTGA
TATTGTGTGGACTGTAAATGAGATTTTTCGATGATTTTTTAAACCGAAAAGTCTCACAAA
ATCCGTGTACACGTGATACTCTTCCTGTGTGTCGATCCTAAATTTGGTGATTCTGTGTTT
GTTGTGCTGTGGATTTTGAGCGTTCTGTTTGTGCTTAAACTTGGTCCAAATCGATTTTCT
ATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTACAACGCCCCAAACGCATCGTA
CAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCGT
CTATGCACAGCACCATCAGCTAAACACGGCCCCCGGGAATGGAGGTGCGGGTAGTAGCAG
CGCGGGACACAGTGCCGGACACAGCGGCCACACTGGTAATGCGCCCCCCAACTTGAGGCT
GAACCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6655#0      ------------------------------------------------------------
consensus_6655#2      GCTCACAGTTACCGGATTCATCGTCTTCGCCGCCACTGAGGTTATCATCGATATTGCTGT 60
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      ------------------------------------------------------------
consensus_6655#2      GATCCGTTTAGTTATTTTCTCGAAAAATATATCCCCAAAACTCCTCCCGTCGGTTTGTGA 120
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      ---------------------------------------------GAAAAGTCTCACAAA 15
consensus_6655#2      TATTGTGTGGACTGTAAATGAGATTTTTCGATGATTTTTTAAACCGAAAAGTCTCACAAA 180
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      ATCCGTGTACACGTGATACCCTTCCTGTGTGTCGATCCTGAATTTGGTGATTCTGTGTTT 75
consensus_6655#2      ATCCGTGTACACGTGATACTCTTCCTGTGTGTCGATCCTAAATTTGGTGATTCTGTGTTT 240
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      GTTGTGCTGTGGATTTTG-------------TGCTTAAACTTGGTCCAAATCGATTTTCT 122
consensus_6655#2      GTTGTGCTGTGGATTTTGAGCGTTCTGTTTGTGCTTAAACTTGGTCCAAATCGATTTTCT 300
consensus_6655#1      AGATNGCCCAGGGTTATGA-------------GTGCAAAATCTGTGAAATTCATAATGAA 47
                           **   ** ** **              *   *** *  **  ** **    *   

consensus_6655#0      ATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTAC--AACGCCCCAAACGCATCG 180
consensus_6655#2      ATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTAC--AACGCCCCAAACGCATCG 358
consensus_6655#1      TTCCCTAAAGCGATGGATAAAATTTGCCGCTCACAGTTACCGGATTCATCGTCTTCGCCG 107
                       * ****   *    *   *** * *  *  *  *  ***   *  *  *     *  **

consensus_6655#0      TAC--AGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGT 238
consensus_6655#2      TAC--AGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGT 416
consensus_6655#1      CACTGAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGT 167
                       **  *******************************************************

consensus_6655#0      GC-GTCTATGCACA-GCACCATCAGCTATACGCCGCCCCCGGGAATGGGGGTG--CGGGC 294
consensus_6655#2      GC-GTCTATGCACA-GCACCATCAGCTAAACACGGCCCCCGGGAATGGAGGTG--CGGGT 472
consensus_6655#1      GCTGTCTATGCACATGCACCATCAGCTAAACACTGGCCCCGGGAATGGATGTGTGCGGGT 227
                      ** *********** ************* ** * * ************  ***  **** 

consensus_6655#0      AGTAGCAGCGC-GGGACACAGTGCCGGACACAGCGGCCACACTGGCAATGC-GCCCCCCA 352
consensus_6655#2      AGTAGCAGCGC-GGGACACAGTGCCGGACACAGCGGCCACACTGGTAATGC-GCCCCCCA 530
consensus_6655#1      AGTAGCAGCGCTGGGACACAGTGCCGGACACAGTGTGCACACTGGTAATGCTGCCCCCCA 287
                      *********** ********************* *  ******** ***** ********

consensus_6655#0      ACTTGAGGCTGAACCCGACCAGCATACGGCAGATGCA-GCATCAGTATCTTCATCATACA 411
consensus_6655#2      ACTTGAGGCTGAACCCG------------------------------------------- 547
consensus_6655#1      ACTTGAGGCTGAACCGA--CAGCATAAGGCAGATGCACGCATCAGTATCTTCATCATACA 345
                      ***************                                             

consensus_6655#0      G-AATGTTTGGACTCGTCAACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCA 470
consensus_6655#2      ------------------------------------------------------------
consensus_6655#1      NGAATGCTTGGACTCGNTCCCACCCCCCAACCACAAGANAGCCAGANACCCTGTCCNNAC 405
                                                                                  

consensus_6655#0      CCCGTACAATCCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCG 530
consensus_6655#2      ------------------------------------------------------------
consensus_6655#1      GANCACNCACTCGGGNCANCACCACCAACCCCNCGGTAGAAACAGACANNCCAACACNGA 465
                                                                                  

consensus_6655#0      CAAACGGATGATGCG-TTCCGCCCCGAATGGCAGCATTAATTCGGCGTTCGATGAGCTGC 589
consensus_6655#2      ------------------------------------------------------------
consensus_6655#1      CAACCANACNAAACNACNNNACANCAAACAACACNAAANACAACAAAAAAATAATANCAA 525
                                                                                  

consensus_6655#0      GCGTGCACGTGCCAACGTT---TCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGC 646
consensus_6655#2      ------------------------------------------------------------
consensus_6655#1      AAAAAAACAAACCAACACCAGANNCACATACAANAATAATAAAACAAANCACCAANAANN 585
                                                                                  

consensus_6655#0      GGCTAGCGATCGCGTACATTGCACTGCTGCGCGAGGTGCTCGAAGCGGACTACGATCCGC 706
consensus_6655#2      ------------------------------------------------------------
consensus_6655#1      TGATAAACTCACAAAACAAAANAAAACAAAACACCACACAATAAAANAACCAAAACCNAA 645
                                                                                  

consensus_6655#0      TCACGTACGTGGAAAAGTGTCTGCGGGGGGAAATAAAGGCCGACCGGGCACACTGGAACA 766
consensus_6655#2      ------------------------------------------------------------
consensus_6655#1      AAATAAACATACTANACATTACTAATNCANACCAAACAATNNACCAAAC----------- 694
                                                                                  

consensus_6655#0      CGAGCGATTTAACGGCACGACTGTCCTGGATCAATTGGGAAAACTTGGGCGTACATCCGG 826
consensus_6655#2      ------------------------------------------------------------
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      GCAGACGTACCATCCTGACGTCGCTGGCACTCGGATCGTCGGAGAGTATGGGTGCGTGTG 886
consensus_6655#2      ------------------------------------------------------------
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      GACCGCCGCCACATTTGATCTAGATTGCAA 916
consensus_6655#2      ------------------------------
consensus_6655#1      ------------------------------