cluster # 6677

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Anopheles gambiae
cluster # 6677 cluster # 6677 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6677#0 length = 974 sequences # 3

consensus_6677#1 length = 676 sequences # 2

consensusID : consensus_6677#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 974
fasta sequence

                              [GGTGAAGCGATCGTGACGGGGGCAGGGGACGAAACGCTGCGCTTCTGGAACGTCTTCAGCAAGGCACGGTCGCAGAAGGAAAACAAGAGCGTGCTGAATCTGTTCACCAACATTCGGTAAAACCCTTCGCGACCTGGAGCTCGCGCAAAGCCCGCGGACGGGAAAGGGATATCTGTACATAGTGTCTAGCATCGAAGCGTATAGCGATTTTAAGCGAATGCGTGTATGTGTGTGGTTTTTCCTTTTTGCTATAGGAATATTTTATATTCTATATATATTTTCATTCCCGTTTTTTGCACTACTACCCACAAATCTTTCGTAATTTTTTGTTGTTTTAAGCTAGTTTTCCTCC-GCTTTTTCCAATGCAAGAAGAAA-ATCGGGATAATCACAGCATTATGCA-GTAGCAACGAAACTTGCGCGTCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTT-TGTTTTGC-TACGCTTTTCTTTTTTTTAATTCTT-GTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTAATGCAATGAAATCGCCACAATCTCTTTCT-GTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGT-GTTGCTGTTCGATGGAAAAGAGGGTTATA-TAGTT-TATGATGCATCATTTCTT-GTATAATGCAGCACAGTCGCATCGACTTATGTANTATACTCTCTCTTTATTCTTTTCATTTTTNTCATCTCNGGGATTGAATAGTGTTAAAGAAGTTATANNTCCAGCGCATTTGACGCTGTTATTGTCATTGGGCCGNTAGGTATCATATCACCTATTCTTCAAGGGCAAGCGTAGGGTTACACTTTTTAANGNCTACTACTAAGAATATAATCANGCGCGCTCTCACGCGCTATCATAAAGCAACTTACNGGGCCCCCTTAACCAATATCCACACATCCCNTCTNCGGTNACCTGGGTANCTCAAAACGCTTC]

[+] EMBL BM618225             [GGTGAAGCGATCGTGACGGGGGCAGGGGACGAAACGCTGCGCTTCTGGAACGTCTTCAGCAAGGCACGGTCGCAGAAGGAAAACAAGAGCGTGCTGAATCTGTTCACCAACATTCGGTAAAACCCTTCGCGACCTGGAGCTCGCGCAAAGCCCGCGGACGGGAAAGGGATATCTGTACATAGTGTCTAGCATCGAAGCGTATAGCGATTTTAAGCGAATGCGTGTATGTGTGTGGTTTTTCCTTTTTGCTATAGGAATATTTTATATTCTATATATATTTTCATTCCCGTTTTTTGCACTACTACCCACAAATCTTTCGTAATTTTTTGTTGTTTTAAGCTAGTTTTCCTCC GCTTTTTCCAATGCAAGAAGAAA ATCGGGATAATCACAGCATTATGCA GTAGCAACGAAACTTGCGCGTCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTT TGTTTTGC TACGCTTTTCTTTTTTTTAATTCTT GTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTAATGCAATGAAATCGCCACAATCTCTTTCT GTTCGTTCGGA                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM621193             [                                                                     cCGCAGAAGGAAAACAAGAGCGTGCTGAATCTGTTCACCAACATTCGGTAAAACCCTTCGCGACCTGGAGCTCGCGCAAAGCCCGCGGACGGGAAAGGGATATCTGTACATAGTGTCTAGCATCGAAGCGTATAGCGATTTTAAGCGAATGCGTGTATGTGTGTGGTTTTTCCTTTTTGCTATAGGAATATTTTATATTCTATATATATTTTCATTCCCGTTTTTTGCACTACTACCCACAAATCTTTCGTAATTTTTTGTTGTTTTAAGCTAGTTTTCCTCC GCTTTTTCCAATGCAAGAAGAAA ATCGGGATAATCACAGCATTATGCA GTAGCAACGAAACTTGCGCGTCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTT TGTTTTGC TACGCTTTTCTTTTTTTTAATTCTT GTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTAATGCAATGAAATCGCCACAATCTCTTTCT GTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGT GTTGCTGTTCGATGGAAAAGAGGGTTATA TAGTT TATGATGCATCATTTCTT GTATAATGCAGCACAGTCGCATCGACTT                                                                                                                                                                                                                                                                                               ]
[+] EMBL AL930417             [                                                                                                                                                                                                                                                                                                                               ccgaggTTTGTTG TTTAAGCTAGTTTTCCTCCGGCTTTTTCCAATGCAAGAAGAAACATCGGGATAATCACAGCATTATGCACGTAGCAACGAAACTTGCGCGTCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTTCTGTNTTGCGTACGCTTTTCTTTTTTTTAATTCTTGGTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTAATGCAATGAAATCGCCACAATCTCTTTCTGGTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGTGGTTGCTGGTCGATGGAAAAGAGGGTTATACTAGTTCTATGATGCATCATTTCTTGGTATAATGCAGCACAGTCGCATCGACCTATGTANTATACTCTCTCTTTATTCTTTTCATTTTTNTCATCTCNGGGATTGAATAGTGTTAAAGAAGTTATANNTCCAGCGCATTTGACGCTGTTATTGTCATTGGGCCGNTAGGTATCATATCACCTATTCTTCAAGGGCAAGCGTAGGGTTACACTTTTTAANGNCTACTACTAAGAATATAATCANGCGCGCTCTCACGCGCTATCATAAAGCAACTTACNGGGCCCCCTTAACCAATATCCACACATCCCNTCTNCGGTNACCTGGGTANCTCAAAACGCTTC]




>consensus_6677#0
GGTGAAGCGATCGTGACGGGGGCAGGGGACGAAACGCTGCGCTTCTGGAACGTCTTCAGC
AAGGCACGGTCGCAGAAGGAAAACAAGAGCGTGCTGAATCTGTTCACCAACATTCGGTAA
AACCCTTCGCGACCTGGAGCTCGCGCAAAGCCCGCGGACGGGAAAGGGATATCTGTACAT
AGTGTCTAGCATCGAAGCGTATAGCGATTTTAAGCGAATGCGTGTATGTGTGTGGTTTTT
CCTTTTTGCTATAGGAATATTTTATATTCTATATATATTTTCATTCCCGTTTTTTGCACT
ACTACCCACAAATCTTTCGTAATTTTTTGTTGTTTTAAGCTAGTTTTCCTCCGCTTTTTC
CAATGCAAGAAGAAAATCGGGATAATCACAGCATTATGCAGTAGCAACGAAACTTGCGCG
TCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTTTGTTTTGCTACGCTTTTCTTTT
TTTTAATTCTTGTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTAATGCAA
TGAAATCGCCACAATCTCTTTCTGTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAA
CGCGGGTGTTGCTGTTCGATGGAAAAGAGGGTTATATAGTTTATGATGCATCATTTCTTG
TATAATGCAGCACAGTCGCATCGACTTATGTANTATACTCTCTCTTTATTCTTTTCATTT
TTNTCATCTCNGGGATTGAATAGTGTTAAAGAAGTTATANNTCCAGCGCATTTGACGCTG
TTATTGTCATTGGGCCGNTAGGTATCATATCACCTATTCTTCAAGGGCAAGCGTAGGGTT
ACACTTTTTAANGNCTACTACTAAGAATATAATCANGCGCGCTCTCACGCGCTATCATAA
AGCAACTTACNGGGCCCCCTTAACCAATATCCACACATCCCNTCTNCGGTNACCTGGGTA
NCTCAAAACGCTTC

consensusID : consensus_6677#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 676
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTGATTAATGCAATGAAATCGCCACAATCTCTTTCTGTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGTGTTGCTGTTCGATGGAAAAGAGGGTTATATAGTTTATGATGCATCATTTCTTGTATAATGCAGCACAGTCGCATCGACTTTGTTTTTTTTTTTTCTTTTCATTTTTTTTTTGGGATTGAATAGTGTTAAAGAAGTTTTTCCAGCGCATTGAGTGTTTTGTCATTGCGTGTTTTCTTTTTGCAGTGTAATTAGCTTTAGTTTAGGGTTAGGTTTAGATAGGCCCTACATTTTTTTTGTCTGTTTAAGTCAAAATTCTCACGTTATGGTTCAGTATGCGTGCTGAAAAAGCATGCGTGCACGCGACTGTGTTCAAATTGCATAGGAATAAATGATTAAGGCGCATAATCAATCATTCACCACTTTGCTACGGCTTCCCCCCCCCCCCCCTCCTTTGGTTTGGTGAGCCAATGCGAACTTGCTTCCTTGGCAGAAGAAGAGCCGGGGAGCGTACTGTATCTTTCAAGGCAAGAATGAAACCCTTCGCGGGTTTGTAAGGAGCGTTTGCGGCATTTAATTGCAAAAGTTTTGCATTGTACGCGTTTAAAACTCATAATCCTTAACGCTGGTCA]

[+] EMBL BM600656             [CCGCCCACGCGTCCGCCCACGCGTCCGGTGATTAATGCAATGAAATCGCCACAATCTCTTTCTGTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGTGTTGCTGTTCGATGGAAAAGAGGGTTATATAGTTTATGATGCATCATTTCTTGTATAATGCAGCACAGTCGCATCGACTTTGTTTTTTTTTTTTCTTTTCATTTTTTTTTTGGGATTGAATAGTGTTAAAGAAGTTTTTCCAGCGCATTGAGTGTTTTGTCATTGCGTGTTTTCTTTTTGCAGTGTAATTAGCTTTAGTTTAGGGTTAGGTTTAGATAGGCCCTACATTTTTTTTGTCTGTTTAAGTCAAAATTCTCACGTTATGGTTCAGTATGCGTGCTGAAAAAGCATGCGTGCACGCGACTGTGTTCAAATTGCATAGGAATAAATGATTAAGGCGCATAATCAATCATTCACCACTTTGCTACGGCTTCCCCCCCCCCCCCCTCCTTTGGTTTGGTGAGCCAATGCGAACTTGCTTCCTTGGCAGAAGAAGAGCCGGGGAGCGTACTGTATCTTTCAAGGCAAGAATGAAACCCTTCGCGGGTTTGTAAGGAGCGTTTGCGGCATTTAATTGCAAAAGTTTTGCATTGTACGCGTTTAAAACTCATAATCCTTAACG       ]
[+] EMBL BX617441             [                                                                                                                                                                                                                                                                                                       TTAGCTTTAGTTTAGGGTTAGGTTTAGATAGGCCCTACATTTTTTTTGTCTGTTTAAGTCAAAATTCTCACGTTATGGTTCAGTATGTGTGCTG AAAAGCATGCGTGCACGCGACTGTTTTCAAATTGCATAGGAATAAATGATTAAGGCGCATAATCAATCATTCACCACTTTGCTACGGCTTCCCCCCCCCCCCCCTCCTTTGGTTTGGTGAGCCAATGCGAACTTGCTTCCTTGGCAGAAGAAGAGCCGGGGAGCGTACTGTATCTTTCAAGGCAAGAATGAAACCCTTCGCGGGTTTGTAAGGAGCGTTTGCGGCATTTAATTGCAAAAGTTTTGCATTGTACGCGTTTAAAACTCATAATCCTTAACGCTGGTCA]




>consensus_6677#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTGATTAATGCAATGAAATCGCCACAATCTCTT
TCTGTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGTGTTGCTGTTCGAT
GGAAAAGAGGGTTATATAGTTTATGATGCATCATTTCTTGTATAATGCAGCACAGTCGCA
TCGACTTTGTTTTTTTTTTTTCTTTTCATTTTTTTTTTGGGATTGAATAGTGTTAAAGAA
GTTTTTCCAGCGCATTGAGTGTTTTGTCATTGCGTGTTTTCTTTTTGCAGTGTAATTAGC
TTTAGTTTAGGGTTAGGTTTAGATAGGCCCTACATTTTTTTTGTCTGTTTAAGTCAAAAT
TCTCACGTTATGGTTCAGTATGCGTGCTGAAAAAGCATGCGTGCACGCGACTGTGTTCAA
ATTGCATAGGAATAAATGATTAAGGCGCATAATCAATCATTCACCACTTTGCTACGGCTT
CCCCCCCCCCCCCCTCCTTTGGTTTGGTGAGCCAATGCGAACTTGCTTCCTTGGCAGAAG
AAGAGCCGGGGAGCGTACTGTATCTTTCAAGGCAAGAATGAAACCCTTCGCGGGTTTGTA
AGGAGCGTTTGCGGCATTTAATTGCAAAAGTTTTGCATTGTACGCGTTTAAAACTCATAA
TCCTTAACGCTGGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6677#0      GGTGAAGCGATCGTGACGGGGGCAGGGGACGAAACGCTGCGCTTCTGGAACGTCTTCAGC 60
consensus_6677#1      ------------------------------------------------------------
                                                                                  

consensus_6677#0      AAGGCACGGTCGCAGAAGGAAAACAAGAGCGTGCTGAATCTGTTCACCAACATTCGGTAA 120
consensus_6677#1      ------------------------------------------------------------
                                                                                  

consensus_6677#0      AACCCTTCGCGACCTGGAGCTCGCGCAAAGCCCGCGGACGGGAAAGGGATATCTGTACAT 180
consensus_6677#1      ------------------------------------------------------------
                                                                                  

consensus_6677#0      AGTGTCTAGCATCGAAGCGTATAGCGATTTTAAGCGAATGCGTGTATGTGTGTGGTTTTT 240
consensus_6677#1      ------------------------------------------------------------
                                                                                  

consensus_6677#0      CCTTTTTGCTATAGGAATATTTTATATTCTATATATATTTTCATTCCCGTTTTTTGCACT 300
consensus_6677#1      ----------------------------CCGCCCACGCGTCCGCCCACGCGTCCGGTGAT 32
                                                  *     *    * *   * **  *   *   *

consensus_6677#0      ACTACCCACAAATCTTTCGTAATTTTTTGTTGTT---TTAAGCTAGTTTTCCTCCGCTTT 357
consensus_6677#1      TAATGCAATGAAATCGCCACAATCTCTTTCTGTTCGTTCGGAGAAGCATCACACCTCGTT 92
                           * *  **     *  *** * **  ****   *      **  *  * ** * **

consensus_6677#0      TTCCAATGCAAGAAGAAAATCG---GGATAATCACAGCATTATGCAGTAGCAACGAAACT 414
consensus_6677#1      ACCCAAAACGCGGGTGTTGCTGTTCGATGGAAAAGAGGGTTATATAGT--TTATGA---- 146
                        ****  *  *         *   *    *  * **  ****  ***    * **    

consensus_6677#0      TGCGCGTCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTTTGTTTTGCTACGCTTT 474
consensus_6677#1      TGCATCATTTCTTGTATAATGCAGCACAGTCGCATCGACTTTGTTTTTTTTTTTTCTTTT 206
                      ***     *  * *   **   * ** * *   * *  **** ** ****  *    ***

consensus_6677#0      TCTTTTTTTTAATTCTTGTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTA 534
consensus_6677#1      CATTTTTTTT--TTGGGATTGAATAGTGTTAAAGAAGTTTTTCCAGC------GCATTGA 258
                        ********  **    *  **** * **     * *** *           *   * *

consensus_6677#0      ATGCAATGAAATCGCCACAATCTCTTTCTGTTCGTTCGGAGAAGCATCACACCTCGTTAC 594
consensus_6677#1      GTGTTTTGTCATTGC-GTGTTTTCTTTTTGC-----------AGTGTAA-------TTAG 299
                       **   **  ** **     * ***** **            **  * *       *** 

consensus_6677#0      CCAAAACGCGGGTGTTGCTGTTCGATGGAAAAGAGGGTTATATAGTTTATGATGCATCAT 654
consensus_6677#1      CTTTAGTTTAGG-GTTAGGTTTAGATAGGCCCTACATTTTTTTTGTCTGTT-TAAGTCAA 357
                      *   *     ** ***    ** *** *     *   ** * * ** * *  *   *** 

consensus_6677#0      TTCTTGTATAATGCAGCACAGTCGCATCGACTTATGTANTATACTCTCTCTTTATTCTTT 714
consensus_6677#1      AATTCTCACGTTATGGTTCAGT-ATGCGTGCTGAAAAAGCATGCGTGCACGCGACTGTGT 416
                         *   *   *   *  ****        ** *   *  ** *   * *   * * * *

consensus_6677#0      TCATTTTTNTCATC--TCNGGGATTGAATAGTGTTA--AAGAAGTTATANNT---CCAGC 767
consensus_6677#1      TCAAATTGCATAGGAATAAATGATTAAGGCGCATAATCAATCATTCACCACTTTGCTACG 476
                      ***  **    *    *    **** *   *  * *  **  * * *    *   * *  

consensus_6677#0      GCATTTGACGCTGTTATTGTCATTGGGCCGNTAGGTATCATATCACCTATTCTTCAAGGG 827
consensus_6677#1      GCTTCCCCCCCCCCCCCCTCCTTTGGTTTGGTGAGC-CAATGCGAACT-TGCTTCCTTGG 534
                      ** *    * *         * ****   * *  *    **   * ** * ****   **

consensus_6677#0      CAAGCGTAGGGTTACACTTTTTAANGNCTACTACTAAGAATATAATCANGCGCGCTCTCA 887
consensus_6677#1      CAGAAGAAGAGCCGGGGAGCGTACTGTAT-CTTTCAAGGCAAGAATGAAAC---CCTTCG 590
                      **   * ** *          **  *  * **   ***   * *** *  *   *  ** 

consensus_6677#0      CGCGCTATCATAAAGCAACTTACNGGGCCCCCTTAACCAATATCCACACATCCCNTCTNC 947
consensus_6677#1      CGGGTTTGTAAGGAGCG-TTTGCGGCATTTAATTGCAAAAGTTTTGCATTGTACGCGTTT 649
                      ** * *   *   ***   ** * *       **    **  *   **     *   *  

consensus_6677#0      GGTNACCTGGGTANCTCAAAACGCTTC- 974
consensus_6677#1      AA-AACTCATAATCCTTAACGCTGGTCA 676
                          **        ** **  *   **