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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[GCCAAGAATTCGGCACGAGGGTGTGCGGAACATGAATGTTCGAGTATTACGGCAAAGTGTGTGCGAGTTTTTGAGTGGCGGTGGTGGGTATGGAGGGTTGGGAAATCGCTCATGCAACAATGAAAAACTGGAAACATTTATACACAACAATGCATACCGTCTAGTGTGTTAATGTATGTGAGCGTGTGTATGTATGTATGAAATTGTTGTTTTGAGGCTCACATTAAAACGTCGAATAAAAACCGCACACAATCAAAACAGGCCAAGTTACGAAACCAAAACAAAGTACCCCCCCCCCCCCCTGAAATCAGCTGTCAAACGCCTGGTGCTGTCAAAGCAGATCTGCTTTGGATATTTCAAAATCGAGAACAGGNACCCGGGAAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGGCACCGGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATTAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGGTTGGTGTACGACAGAAGGGGATGCAACGGATTGTCCTACACGGCTGGATTACGCTGTCAAACGAANGGATCANACACTGGACCGAGGAAAGTACGTNGCAAGGACCGGTGTGAAAAGTACTGATCCAAAAAAGGGACAATGTCCCTTTAGGCACGGAAATGATACTTAAGTCNCTTTNATTTGTAATCNAATCAGGCATTGTTG]
[+] EMBL BX467592 [GCCAAGAATTCGGCACGAGGGTGTGCGGAACATGAATGTTCGAGTATTACGGCAAAGTGTGTGCGAGTTTTTGAGTGGCGGTGGTGGGTATGGAGGGTTGGGAAATCGCTCATGCAACAATGAAAAACTGGAAACATTTATACACAACAATGCATACCGTCTAGTGTGTTAATGTATGTGAGCGTGTGTATGTATGTATGAAATTGTTGTTTTGAGGCTCACATTAAAACGTCGAATAAAAACCGCACACAATCAAAACAGGCCAAGTTACGAAACCAAAACAAAGTACCCCCCCCCCCCCCTGAAATCAGCTGTCAAACGCCTGGTGCTGTCAAAGCAGATCTGCTTTGGATATTTCAAAATCGAGAACAGGNACCCGGGAAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGGCACCGGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATTAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGGTTGGTGTACGACAGAAGGGGATGCAACGGATTGTCCTACACGGCTGGATTACGCTGTCAAACGAANGGATCANACACTGGACCGAGGAAAGTACGTNGCAAGGACCGGTGTGAAAAGTACTGATCCAAAAAAGGGACAATGTCCCTTTAGGCACGGAAATGATACTTAAGTCNCTTTNATTTGTAATCNAATCAGGCATTGTTG]
consensusID : consensus_6678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 769 fasta sequence
[CCGGTGCGGCCGAAGGAAAACAATTGTTGTGAAATAGTGATCGAAAACGTAAATAAAATAGTCATCTCCACGCATCGCTCGCTACAGAACAGCACCCGGG-AAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGAGGATGCAACGGATTGTCCTACACGCTGGATTACGCCGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAATACGAAAAACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGAGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGTGTAATAAATTAGCCGNGGTTGAGTACCT]
[+] EMBL BM612488 [CCGGTGCGGCCGAAGGAAAACAATTGTTGTGAAATAGTGATCGAAAACGTAAATAAAATAGTCATCTCCACGCATCGCTCGCTACAGAACAGCACCCGGG AAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGAGGATGCAACGGATTGTCCTACACGCTGGATTACGCCGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAATACGAAAAACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAAC ]
[+] EMBL BX615910 [ GTTGTGAAATAGTGATCGAAAACGTAAATAAAATAGTCATCTCCACGCATCTCTCGCTACAGAACAGCACCCGGG AAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGGGGATGCAACGGATTGTCCTACACGCTGGATTACGCTGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAAAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTCTTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGGCAGAGCAGCAAACACGAAACACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGTACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGA ]
[+] EMBL BX623214 [ TCATCTCCACGCATCGCTCGCTACAGAACAGCACCCGGGNAAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGAGGATGCAACGGATTGTCCTACACGCTGGATTACGCCGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAATACGAAAAACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGAGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGTGTAATAAATTAGCCGNGGTTGA ]
[+] EMBL BM630070 [ ccgGCAACGGATTGTCCTACACGCTGGATTACGCTGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAAAACGAAACACTTTTAGACGTACCGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCAACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGAGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGTGTAATAAATTAGCCG TGTTGAGTACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6678#0 --------------GCCAAGAATTCGGCACGAGGGTGTG-CGGAACATGAATGTTCGAGT 45
consensus_6678#1 CCGGTGCGGCCGAAGGAAAACAATTGTTGTGAAATAGTGATCGAAAACGTAAATAAAATA 60
* ** * * * ** *** *** * * * * *
consensus_6678#0 ATTACGGCAAAGTGTGTGCGAGTTTTTGAGTGGCGGTGGTGGGTATGGAGGGTTGGGAAA 105
consensus_6678#1 GTCATCTCCACGCAT-CGCTCGCTACAGAACAGCACCCGGGAAAGGGCGAGGGCAGTAAA 119
* * * * * * ** * * ** ** * * * ** * ***
consensus_6678#0 TCGCTCATGCAACAATGAAAAACTGGAAACATTTATAC-ACAACAATGCATACCGTCTAG 164
consensus_6678#1 TTTCCAGTGAAACAATGGCCT-CCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAG 178
* * ** ******* * * * * ** * ** *** * **** **
consensus_6678#0 TGTGTTAATGTA-TGTGAGCGTGTGTATGTATGTATGAAATTGTTGTTTTGAGGCTCACA 223
consensus_6678#1 CATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGG 238
* ** * ** * * * * *** * * **
consensus_6678#0 TTAAAACGTCGAATAAAAACCGCACACAATCAAAACAGGC-CAAGTTACGAAACCAAAAC 282
consensus_6678#1 ATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAG 298
**** * * * ** * * ** * * * * * **** * * * * *
consensus_6678#0 AAAGTACCCCCCCCCCCCCCTGAAATCAGCTGTCAAACGCCTGGTGCTGTCAAAGCAGAT 342
consensus_6678#1 AGAGGATGCAACGGATTGTCCTACAC--GCTGGATTACGCC--GCAACGAAAGATAAAAT 354
* ** * * * * * * **** ***** * * * * * **
consensus_6678#0 CTGCTTTGGA-TATTTCAAAATCGAGAACAGGNACC---CGGGAAAGGGCGAGGGCAGTA 398
consensus_6678#1 GGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTC 414
* * * ** * ** * * * * * ** ** ** * * * **
consensus_6678#0 AATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGGCACCGGTGCGTGCCGTGA 458
consensus_6678#1 CCTTTTAGGCACGGAAATGGATTACGTTGAAACGGAC-CTGTCGGCGGAATTTGTATTCA 473
*** * ***** * * ** * * * * *** ** * *
consensus_6678#0 AGCATCGGAAGCTGCTGCCGATTAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACA 518
consensus_6678#1 ACAATCCCAA--CATCAAGGGCACGTGCGGC--TGTGGC-GAATCGTTCAGCATCTAAC- 527
* *** ** * * ** ** *** ** ** * ***** ***
consensus_6678#0 GGATAAAGGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGGTTGGTGTACG 578
consensus_6678#1 GAGTCAGAGCAGC-----AAATACGAAAA-ACTTTTAGACGTACTGTAAGTTGCTTCGCG 581
* * * *** * ** * **** **** ** **** * **
consensus_6678#0 ACAGAAGGGGATGCAACGGATTGTCCTACACGGCTGGATTACGCTGTCAAACGAANGGAT 638
consensus_6678#1 ATAGAAAA--ATG----GGATCGCTCC-----------CTTCCTTCTCGGGACGACGGTC 624
* **** *** **** * * * * * ** * **
consensus_6678#0 CANACACTGGACCGAGGAAAGTACGTNGCAAGGACCGGTGTGAAA-AGTACTGATCCAAA 697
consensus_6678#1 CCGCTACTTTCTCGTGGCTTGT-TGTTTTA--GATTTGTAAAATCTAGCGTTGAACAAAG 681
* *** ** ** ** ** * ** ** * ** *** * **
consensus_6678#0 AAAGGGACAATGT-CCCTTTAGGCACGGAAATGATACTTA--AGTCNCTTTNATTTGTA- 753
consensus_6678#1 AGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGT 741
* ** ** * *** ** * *** *** *** * ** ****
consensus_6678#0 --ATCNAATCAGGCATTGTTG------- 772
consensus_6678#1 GTAATAAATTAGCCGNGGTTGAGTACCT 769
* *** ** * ****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||