cluster # 6680

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Anopheles gambiae
cluster # 6680 cluster # 6680 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6680#0 length = 928 sequences # 4

consensus_6680#1 length = 474 sequences # 1

consensusID : consensus_6680#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 928
fasta sequence

                              [GCCTAGGTTTTGTTCCCGTAGCAGCAGGGACGGTTCGTTTTATCGATTTTTGGTTTCCATATCTCTGGTGCGAGTTAGTACAAGGGAGGAGTGAAAAAAGCCCTTCCCGTTTCTTGGTGAAAACGTGGCCATGAGTGACGGAAGCGGTGGTGGCAGTGTGCGACAGCGCAAGAAAAGCTCCGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGGCAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGGCATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCAGCGGGAGGTGCTCGAGCTGCACATCCCCCCGCTCGACTGCTCCCGCCCCTATCTGGAGGAAATATCCAAGTTTGCCGGCTGCATCCCGAAACGGTGCGGCCGGTTCGTGAGCGACAAGATCGTTTCGCCGGCCGAGGCCGGCATACTGCTCGATCTCGCCCGGGCCGGCTTCGCCCTCGGCCAGTCGGCGGGCGGCGCCTCCATACTGTACCTGCACTCGGGCGCCCTCTCCAAGGGGACGCAGTTCGTGAACGTGTACCGGTTGCCGGAAGCGAAGCAGCTCTTCACCAGCCAACATATCAACGTGTACCGGCACGTCAAGGCGAAGGTGCAGCAGGCGGTGGCGGAAAACTTCCGCCTTAGCGCGGACGCACTGCACCTCACCCATCCGACCTTCTTCTCCCGGCTGACGAACGCGACCGCCAAAACGATCCACGACGAGTACTGGCACGAGCACGTAGACAAGGAAACGTACAACTCGTTCCACTACACCACGCTGCTGTACCTGACAGACTATGGGAAGGATTTTACCGGAGGTCGGTTCGTGTTTATCGACAACGAGGGTAAG]

[+] EMBL CNS09578             [GCCTAGGTTTTGTTCCCGTAGCAGCAGGGACGGTTCGTTTTATCGATTTTTGGTTTCCATATCTCTGGTGCGAGTTAGTACAAGGGAGGAGTGAAAAAAGCCCTTCCCGTTTCTTGGTGAAAACGTGGCCATGAGTGACGGAAGCGGTGGTGGCAGTGTGCGACAGCGCAAGAAAAGCTCCGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGGCAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGGCATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCAGCGGGAGGTGCTCGAGCTGCACATCCCCCCGCTCGACTGCTCCCGCCCCTATCTGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CNS09DER             [                                                                                                                      GAAAACGTGGCCATGAGTGACGGAAGCGGTGGTGGCAGTGTGCGACA CGCAAGAAAAGCTCCGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGGCAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGGCATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCAGCGGGTGGTGCTCGAGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX611863             [                                                                                                                                           GGAAGCGGTGGTGGCAGTGTGCGACAGCGCAAGAAAAGCTCCGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGGCAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGGCATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCAGCGGGAGGTGCTCGAGCTGCGCACCCAGCCGCTCGACTGCTCCCGCCCCTATCTGGAGGAAATATCCAAGTTTGCCGGCTGCATCCCGAAACGGTGCGGCCGGTTCGTGAGCGACAAGATCGTTTCGCCGGCCGAGGCCGGCATACTGCTCGATCTCGCCCGGGCCGGCTTCGCCCTCGGCCAGTCGGCGGGCGGCGCCTCCATACTGTACCTGCACTCGGGCGCCCTCTCCAAGGGGACGCAGTTCGTGAACGTGTACCGGTTGCCGGAAGCGAAGCAGCTCTTCACCAGCCAACATATCAACGTGTACCGGCACGTCAAGGC                                                                                                                                                                                                                                                    ]
[+] EMBL BX609496             [                                                                                                                                                                                                                                                                                                                                                                                                                    GCCCCTATCTGGAGGAAATATCCAAGTTTGCCGGCTGCATCCCGAAACGGTGCGGCCGGTTCGTGAGCGACAAGATCGTTTCGCCGGCCGAGGCCGGCATACTGCTCGATCTCGCCCGGGCCGGCTTCGCCCTCGGCCAGTCGGCGGGCGGCGCCTCCATACTGGACCTGCACTCGGGCGCCCTCTCCAAGGGGACGCAGTTCGTGAACGTGTACCGGTTGCCGGAAGCGAAGCAGCTCTTCACCAGCCAACATATCAACGTGTACCGGCACGTCAAGGCGAAGGTGCAGCAGGCGGTGGCGGAAAACTTCCGCCTTAGCGCGGACGCACTGCACCTCACCCATCCGACCTTCTTCTCCCGGCTGACGAACGCGACCGCCAAAACGATCCACGACGAGTACTGGCACGAGCACGTAGACAAGGAAACGTACAACTCGTTCCACTACACCACGCTGCTGTACCTGACAGACTATGGGAAGGATTTTACCGGAGGTCGGTTCGTGTTTATCGACAACGAGGGTAAG]




>consensus_6680#0
GCCTAGGTTTTGTTCCCGTAGCAGCAGGGACGGTTCGTTTTATCGATTTTTGGTTTCCAT
ATCTCTGGTGCGAGTTAGTACAAGGGAGGAGTGAAAAAAGCCCTTCCCGTTTCTTGGTGA
AAACGTGGCCATGAGTGACGGAAGCGGTGGTGGCAGTGTGCGACAGCGCAAGAAAAGCTC
CGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGG
CAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGG
CATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCA
GCGGGAGGTGCTCGAGCTGCACATCCCCCCGCTCGACTGCTCCCGCCCCTATCTGGAGGA
AATATCCAAGTTTGCCGGCTGCATCCCGAAACGGTGCGGCCGGTTCGTGAGCGACAAGAT
CGTTTCGCCGGCCGAGGCCGGCATACTGCTCGATCTCGCCCGGGCCGGCTTCGCCCTCGG
CCAGTCGGCGGGCGGCGCCTCCATACTGTACCTGCACTCGGGCGCCCTCTCCAAGGGGAC
GCAGTTCGTGAACGTGTACCGGTTGCCGGAAGCGAAGCAGCTCTTCACCAGCCAACATAT
CAACGTGTACCGGCACGTCAAGGCGAAGGTGCAGCAGGCGGTGGCGGAAAACTTCCGCCT
TAGCGCGGACGCACTGCACCTCACCCATCCGACCTTCTTCTCCCGGCTGACGAACGCGAC
CGCCAAAACGATCCACGACGAGTACTGGCACGAGCACGTAGACAAGGAAACGTACAACTC
GTTCCACTACACCACGCTGCTGTACCTGACAGACTATGGGAAGGATTTTACCGGAGGTCG
GTTCGTGTTTATCGACAACGAGGGTAAG

consensusID : consensus_6680#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence

                              [AATACTGTTTTTCTCGCAATACTTAAAATCATAGCAATACTATAATACAGCTTCCATTTTGGTTAAAACTAAAAAAAACAAAACAGCGTCTCTCTGTAACGTAGGAAGAAGGAACATAAGGAACACTGGAACGCAACATGGAATGTAAGCAGTCGTCTACGCACTAAACTCCTCCAGCGTACGGATCACTAGCACCGTGTCCGCCCTATCTCACGGTTCGGCCGATCTCTCCTCCGCGTTCTGATCGTCCTCATCGTCGTCCAGCGCAAACTTCGGATCGGCCATTGCGTACTCCCGGTCGCACGTGAACGAAATGGTGATCGCGTACCGCACCCCACCCGTCACCTGCTCCACGTGGTGCATATTTTCGGCGCCGGACGTGAACCCACTGACCCGGGCCCGCTTCGGCTCGATGTACACGTGCGTCCGGTTGTGCTTACCCTCGTTGTCGATAAACACGAACCGACCTCCGGT]

[+] EMBL CNS09DES             [AATACTGTTTTTCTCGCAATACTTAAAATCATAGCAATACTATAATACAGCTTCCATTTTGGTTAAAACTAAAAAAAACAAAACAGCGTCTCTCTGTAACGTAGGAAGAAGGAACATAAGGAACACTGGAACGCAACATGGAATGTAAGCAGTCGTCTACGCACTAAACTCCTCCAGCGTACGGATCACTAGCACCGTGTCCGCCCTATCTCACGGTTCGGCCGATCTCTCCTCCGCGTTCTGATCGTCCTCATCGTCGTCCAGCGCAAACTTCGGATCGGCCATTGCGTACTCCCGGTCGCACGTGAACGAAATGGTGATCGCGTACCGCACCCCACCCGTCACCTGCTCCACGTGGTGCATATTTTCGGCGCCGGACGTGAACCCACTGACCCGGGCCCGCTTCGGCTCGATGTACACGTGCGTCCGGTTGTGCTTACCCTCGTTGTCGATAAACACGAACCGACCTCCGGT]




>consensus_6680#1
AATACTGTTTTTCTCGCAATACTTAAAATCATAGCAATACTATAATACAGCTTCCATTTT
GGTTAAAACTAAAAAAAACAAAACAGCGTCTCTCTGTAACGTAGGAAGAAGGAACATAAG
GAACACTGGAACGCAACATGGAATGTAAGCAGTCGTCTACGCACTAAACTCCTCCAGCGT
ACGGATCACTAGCACCGTGTCCGCCCTATCTCACGGTTCGGCCGATCTCTCCTCCGCGTT
CTGATCGTCCTCATCGTCGTCCAGCGCAAACTTCGGATCGGCCATTGCGTACTCCCGGTC
GCACGTGAACGAAATGGTGATCGCGTACCGCACCCCACCCGTCACCTGCTCCACGTGGTG
CATATTTTCGGCGCCGGACGTGAACCCACTGACCCGGGCCCGCTTCGGCTCGATGTACAC
GTGCGTCCGGTTGTGCTTACCCTCGTTGTCGATAAACACGAACCGACCTCCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6680#0      GCCTAGGTTTTGTTCCCGTAGCAGCAGGGACGGTTCGTTTTATCGATTTTTGGTTTCCAT 60
consensus_6680#1      ----------------------------------------------------AATACTGT 8
                                                                            * *  *

consensus_6680#0      ATCTCTGGTGCGAGTTAGTACAAGGGAGGAGTGAAAAAAGCCCTTCCCGTTTCTTGGTGA 120
consensus_6680#1      TTTTCTCGCAATACTTAAAATCATAGCAATACTATAATACAGCTTCCA---TTTTGGTTA 65
                       * *** *    * ***  *  *  *       * ** *   *****    * ***** *

consensus_6680#0      AAACGTGGCCATGAGTGACGGAAGCGGTGGTGGCAGTGTGCGACAGCGCAAGAAAAGCTC 180
consensus_6680#1      AAAC-----TAAAAAAAACAAAA----CAGCGTCTCTCTGTAACGTAGGAAGAAGGAACA 116
                      ****      *  *   **  **      * * *  * **  **   * *****      

consensus_6680#0      CGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGG 240
consensus_6680#1      TAAGGA--ACACTGGAAC---GCAACATGGAATGTAAGCAGTCGTCTACGCA----CTAA 167
                          **   *** ** **   *  **    *    *****   * *  * *     *   

consensus_6680#0      CAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGG 300
consensus_6680#1      ACTCCTCCAGCGTACGGATCACTAGCACCG--TGTCCGCCCT-ATCTCACGGTT------ 218
                         *   * * ** * *  **  ******   ***  ****  ***  ** * *      

consensus_6680#0      CATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCA 360
consensus_6680#1      -----CGGCCGATCT---CTCCTCCGCGTTCTGATCGTCCTCA-------TCGTCGTCCA 263
                           *****    *   **   ** ***** *  **             * * *  ***

consensus_6680#0      GCGGGAGGTGCTCGAGCTGCACATCCCCCCGCTCGACTGCTCCCGCCCCTATCTGGAGGA 420
consensus_6680#1      GCG---------CAAACTTCGGATCGGCC--ATTGCGTACTCCCGGTCGCACGTGAACGA 312
                      ***         * * ** *  ***  **   * *  * ******  *  *  ** * **

consensus_6680#0      AATATCCAAGTTTGCCGGCTGCATCCCGAAACGGTGCGGCCGGTTCGTGAGCGACAAGAT 480
consensus_6680#1      AATG---GTGATCGCGTACCGCACCCC--ACCCGT-CACCTGCTCCACGTGGTGC---AT 363
                      ***      * * **   * *** ***  * * ** *  * * * *  * *   *   **

consensus_6680#0      CGTTTCGCCGGCCGAGGCCGGCATACTG-CTCGATCTCGCCCGGGCCGGCTTCGCCCTCG 539
consensus_6680#1      ATTTTCGGCGCCGGACGTGAACCCACTGACCCGGGCCCGCTTCGGCTCGATGTACACGTG 423
                        ***** ** * ** *    *  **** * **  * ***   ***  * *   * *  *

consensus_6680#0      GCCAGTCGGCGGGCGGCGCCTCCATACTGTACCTGCACTCGGGCGCCCTCTCCAAGGGGA 599
consensus_6680#1      ------CGTCCGGTTGTGCTTACCCTCGTTGTCGATAAACACGAACCGACCTCCGGT--- 474
                            ** * **  * ** * *   *  *  *   *  *  *  **  *  *  *    

consensus_6680#0      CGCAGTTCGTGAACGTGTACCGGTTGCCGGAAGCGAAGCAGCTCTTCACCAGCCAACATA 659
consensus_6680#1      ------------------------------------------------------------
                                                                                  

consensus_6680#0      TCAACGTGTACCGGCACGTCAAGGCGAAGGTGCAGCAGGCGGTGGCGGAAAACTTCCGCC 719
consensus_6680#1      ------------------------------------------------------------
                                                                                  

consensus_6680#0      TTAGCGCGGACGCACTGCACCTCACCCATCCGACCTTCTTCTCCCGGCTGACGAACGCGA 779
consensus_6680#1      ------------------------------------------------------------
                                                                                  

consensus_6680#0      CCGCCAAAACGATCCACGACGAGTACTGGCACGAGCACGTAGACAAGGAAACGTACAACT 839
consensus_6680#1      ------------------------------------------------------------
                                                                                  

consensus_6680#0      CGTTCCACTACACCACGCTGCTGTACCTGACAGACTATGGGAAGGATTTTACCGGAGGTC 899
consensus_6680#1      ------------------------------------------------------------
                                                                                  

consensus_6680#0      GGTTCGTGTTTATCGACAACGAGGGTAAG 928
consensus_6680#1      -----------------------------