cluster # 6682

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Anopheles gambiae
cluster # 6682 cluster # 6682 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6682#0 length = 868 sequences # 4

consensus_6682#1 length = 550 sequences # 1

consensusID : consensus_6682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 868
fasta sequence

                              [CCGCCCATTTGCAGCATATTTTGTGGTTTGACCAGTTTCACTACCAAGCATCATTTCGTGCGGGCCGCCTTGGAGGCGGTCTGCTTCCAGACGCGCGACATTATCGAGGCGATGAAGAAGGACTGCGGCATAAACCTTAACAAGCTCCACACGGACGGTATCATGGCGAGCAACAGCCTTCTAATGCAGCTGCAGGCGGATCTGAGCGGCATTCCTGTGTTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTGCTTGCCTCGATACCGGCCGGTCTGTTCCTGGCCACGACCTTCCTGATGTTGGTTCACTCGCAACGGCGGTGATTAGGTGCATCGACCGACACAAAGGCGACATACAACGAGCAGGCGTATGTCGACCTGCTTTCAACTAGTCTGTTAAACCCGTTAACAATCCAGTTTCGGATACGTTCCGTACACATTCGTCGCGATAAAAGACAGGGCCACAATGGCCAAAGCGCGTGCCCAGGTGCTATAGTTAGCTTAGATGCTGCAACGAACTTGCAAATCGTTGCTGCTGTTGTTGAAAGCTACTCA-GGAAAAAGTTTATATGGCAAAACAAAGCCCGTTCTCAAAAGGTGCTACTTTTGACATCCCTTTTGTTCCGTAGAAGGTACTTTTG]

[+] EMBL BM593258             [CCGCCCATTTGCAGCATATTTTGTGGTTTGACCAGTTTCACTACCAAGCATCATTTCGTGCGGGCCGCCTTGGAGGCGGTCTGCTTCCAGACGCGCGACATTATCGAGGCGATGAAGAAGGACTGCGGCATAAACCTTAACAAGCTCCACACGGACGGTATCATGGCGAGCAACAGCCTTCTAATGCAGCTGCAGGCGGATCTGAGCGGCATTCCTGTGTTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTGCTTGCCTCGATACCGGCCGGTCTGTTCCTGGCCACGACCTTCCTGATGTTGGTTCACTCGCAACGGCGGTGATTAGGTGCATCGACCGACACAAAGGCGACATACAACGAGCAGGCGTATGTCGACCTGCTTTCAACTAGTCTGTTAAACCCGTTAA                                                                                                                                                                                                                                        ]
[+] EMBL BM614460             [CCGCCCATTTGCAGCATATTTTGTGGTTTGACCAGTTTCACTACCAAGCATCATTTCGTGCGGGCCGCCTTGGAGGCGGTCTGCTTCCAGACGCGCGACATTATCGAGGCGATGAAGAAGGACTGCGGCATAAACCTTAACAAGCTCCACACGGACGGTATCATGGCGAGCAACAGCCTTCTAATGCAGCTGCAGGCGGATCTGAGCGGCATTCCTGTGTTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTGCTTGCCTCGATACCGGCCG                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM585265             [                                                                                                                                                                                                                            ccgGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTGCTTGCCTCGATACCGGCCGGTCTGTTCCTGGCCACGACCTTCCTGATGTTGGTTCACTCGCAACGGCGGTGATTAGGTGCATCGACCGACACAAAGGCGACATACAACGAGCAGGCGTATGTCGACCTGCTTTCAACTAGTCTGTTAAACCCGTTAACAATCCAGTTTCGGATACGTTCCGTACACATTCGTCGCGATAAAAGACAGGGCCACAATGGCCAAAGCGCGTGCCCAGGTGCTATAGTTAGCTTAGATGCTGCAACGAACTTGCAAATCGTTGCTGCTGTTGTTGAAAGCTACTCA GGAAAAAGTTTATATGGCAAAACAAAGCCCGTTCTCAAAAGGTGCTACTTTTGACATCCCTTTTGTTCCGTAGAAGGTACTTTTG]
[+] EMBL BM618213             [                                                                                                                                                                                                                                                                           GCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGCAGTTTTGGCTGGGCAGTTTCAAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTGCTAGCATCGATACCGGCCGGTCTGTTCCTGGCCACGACCTTCCTGATGTTGGTTCACTCGCAACGGCGGTGATTAGGTGCATCGACCGGCACAAAGGCGACATACAACGA    GCTTATGTCGACCTGCTTTCAACTAGTCTGTTAAACCCGTTAACAATCCAGTTTCGGATACGTTCCGAACACATTCGTCGCGATAAAAGACAGGGCCACAATGGCCAAAGCGCGTGCCCAGGTGCTATAGCTAGCTTAGATGCTGCAACGAACCTGCAAATCGTTGCTGCTGTTGTTGAAAGCTACTCATGGAAAAAGTGTATATGGTAAAACAAAGCCCGTTCTCAAAAGGTGCTACTTTTGAC                              ]




>consensus_6682#0
CCGCCCATTTGCAGCATATTTTGTGGTTTGACCAGTTTCACTACCAAGCATCATTTCGTG
CGGGCCGCCTTGGAGGCGGTCTGCTTCCAGACGCGCGACATTATCGAGGCGATGAAGAAG
GACTGCGGCATAAACCTTAACAAGCTCCACACGGACGGTATCATGGCGAGCAACAGCCTT
CTAATGCAGCTGCAGGCGGATCTGAGCGGCATTCCTGTGTTGAGGACGGAGGTGCACGAA
CCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAG
CTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCG
ACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGC
AGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTG
CTTGCCTCGATACCGGCCGGTCTGTTCCTGGCCACGACCTTCCTGATGTTGGTTCACTCG
CAACGGCGGTGATTAGGTGCATCGACCGACACAAAGGCGACATACAACGAGCAGGCGTAT
GTCGACCTGCTTTCAACTAGTCTGTTAAACCCGTTAACAATCCAGTTTCGGATACGTTCC
GTACACATTCGTCGCGATAAAAGACAGGGCCACAATGGCCAAAGCGCGTGCCCAGGTGCT
ATAGTTAGCTTAGATGCTGCAACGAACTTGCAAATCGTTGCTGCTGTTGTTGAAAGCTAC
TCAGGAAAAAGTTTATATGGCAAAACAAAGCCCGTTCTCAAAAGGTGCTACTTTTGACAT
CCCTTTTGTTCCGTAGAAGGTACTTTTG

consensusID : consensus_6682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [CAAGAATCGGCACGAGGCTTATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGTTTGTAACCGGCAGTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTTGCTTGGCCTCGATACCGGCCGGTCTNGTTCCTGGCCACGAACCTTCCGTGATGTTCGGTTCACTCGCAAACGGCCGGTGATTAGGTGGCCATCGACCGACACAAAAGGCGACTAGTACAACGNAGGCAGGCGTAATTGTCGACCTGCTTTGCAACTAGTCTGTTAAACCCGGTTAACGAATCCAGTTACGGGGATACGTTCCGTACACAAT]

[+] EMBL BX468696             [CAAGAATCGGCACGAGGCTTATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGTTTGTAACCGGCAGTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTTGCTTGGCCTCGATACCGGCCGGTCTNGTTCCTGGCCACGAACCTTCCGTGATGTTCGGTTCACTCGCAAACGGCCGGTGATTAGGTGGCCATCGACCGACACAAAAGGCGACTAGTACAACGNAGGCAGGCGTAATTGTCGACCTGCTTTGCAACTAGTCTGTTAAACCCGGTTAACGAATCCAGTTACGGGGATACGTTCCGTACACAAT]




>consensus_6682#1
CAAGAATCGGCACGAGGCTTATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTTTT
TTTTGTTTGTAACCGGCAGTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCG
ATGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCT
ACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGA
ACGCTCGGTACACCAAGTGGAAAATGGCAGTTGCAGCGCAGTTTGGGCTGGGCAGTTTCG
AAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTTGCTTGGCCTCGATACCGGCCG
GTCTNGTTCCTGGCCACGAACCTTCCGTGATGTTCGGTTCACTCGCAAACGGCCGGTGAT
TAGGTGGCCATCGACCGACACAAAAGGCGACTAGTACAACGNAGGCAGGCGTAATTGTCG
ACCTGCTTTGCAACTAGTCTGTTAAACCCGGTTAACGAATCCAGTTACGGGGATACGTTC
CGTACACAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6682#0      CCGCCCATTTGCAGCATATTTTGTGGTTTGACCAGTTTCACTACCAAGCATCATTTCGTG 60
consensus_6682#1      ------------------------------------------------------------
                                                                                  

consensus_6682#0      CGGGCCGCCTTGGAGGCGGTCTGCTTCCAGACGCGCGACATTATCGAGGCGATGAAGAAG 120
consensus_6682#1      ------------------------------------------------------------
                                                                                  

consensus_6682#0      GACTGCGGCATAAACCTTAACAAGCTCCACACGGACGGTATCATGGCGAGCAACAGCCTT 180
consensus_6682#1      -----------------CAAGAATCGGCACGAGGCTTATGTTGGAGCG-GCCGCAACATG 42
                                        ** ** *  ***  **    * *    *** **  ** * * 

consensus_6682#0      CTAATGCAGCTGCAGGCGGATCTGAGCGGCATTCCTGTGTTGAGGACGGAGGTGCACGAA 240
consensus_6682#1      CC--TGTTTTTTTTTTTTTTTTTTGTTTGTAA-CCGGCAGTGAGGACGGAGGTGCACGAA 99
                      *   **    *         * *     * *  ** *   ********************

consensus_6682#0      CCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAG 300
consensus_6682#1      CCGGCTGCTCTCGGGACGGCGATG-CCGCTGCACAGGCGAACGGGGTGGATCTGTACAAG 158
                      ************************ ***********************************

consensus_6682#0      CTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCG 360
consensus_6682#1      CTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCG 218
                      ************************************************************

consensus_6682#0      ACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGT-GCAGCG 419
consensus_6682#1      ACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTTGCAGCG 278
                      ***************************************************** ******

consensus_6682#0      CAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTT 479
consensus_6682#1      CAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTT 338
                      ************************************************************

consensus_6682#0      -GCTTG-CCTCGATACCGGCCGGTCTG-TTCCTGGCCACGA-CCTTCC-TGATGTT-GGT 533
consensus_6682#1      TGCTTGGCCTCGATACCGGCCGGTCTNGTTCCTGGCCACGAACCTTCCGTGATGTTCGGT 398
                       ***** *******************  ************* ****** ******* ***

consensus_6682#0      TCACTCGCAA-CGGC-GGTGATTAGGTG--CATCGACCGACACAAA-GGCGAC--ATACA 586
consensus_6682#1      TCACTCGCAAACGGCCGGTGATTAGGTGGCCATCGACCGACACAAAAGGCGACTAGTACA 458
                      ********** **** ************  **************** ******   ****

consensus_6682#0      ACGA--GCAGGCGTA--TGTCGACCTGCTTT-CAACTAGTCTGTTAAACCCG-TTAAC-A 639
consensus_6682#1      ACGNAGGCAGGCGTAATTGTCGACCTGCTTTGCAACTAGTCTGTTAAACCCGGTTAACGA 518
                      ***   *********  ************** ******************** ***** *

consensus_6682#0      ATCCAGTTTCGG--ATACGTTCCGTACACATTCGTCGCGATAAAAGACAGGGCCACAATG 697
consensus_6682#1      ATCCAGTTACGGGGATACGTTCCGTACACAAT---------------------------- 550
                      ******** ***  **************** *                            

consensus_6682#0      GCCAAAGCGCGTGCCCAGGTGCTATAGTTAGCTTAGATGCTGCAACGAACTTGCAAATCG 757
consensus_6682#1      ------------------------------------------------------------
                                                                                  

consensus_6682#0      TTGCTGCTGTTGTTGAAAGCTACTCAGGAAAAAGTTTATATGGCAAAACAAAGCCCGTTC 817
consensus_6682#1      ------------------------------------------------------------
                                                                                  

consensus_6682#0      TCAAAAGGTGCTACTTTTGACATCCCTTTTGTTCCGTAGAAGGTACTTTTG 868
consensus_6682#1      ---------------------------------------------------