cluster # 6685

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Anopheles gambiae
cluster # 6685 cluster # 6685 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6685#0 length = 724 sequences # 4

consensus_6685#1 length = 409 sequences # 1

consensusID : consensus_6685#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 724
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACGAGCAACTGCAACTAACTGCAGGCG-TTTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTTACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCGACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTAGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGAGCGCACCGTCAGGGAGCAAACCAATCCAATGGTGCTTCAAAAGAAAGTTCCACCACCAGTGACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACCAAAGAAACAACCCGTTGCAACACC-GGAGGACAACAAGACACTTTCGGTGCCGAAAGCACGGCAAGAGTCTACCGATTCCGAAAACTCTTCCGACGATGAGGAAGACAGCCGTGAGATGGAAGGCAAAACCTTTACCAAAGCTGGTGTGGAGATCGATCGTGCATCGGCTGGCAATACCAAGATC]

[+] EMBL BM600505             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACGAGCAACTGCAACTAACTGCAGGCG TTTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTTACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCGACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTAGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGAGCGCACCGTCAGGGAGCAAACCAATCCAATGGTGCTTCAAAAGAAAGTTCCACCACCAGTGACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACCAAAGAAACAACCCGTTGCAACACC GGAGGACAACA                                                                                                                                                     ]
[+] EMBL BM638540             [                        CCGGCGGTACGAGCAACTGCAACTAACTGCAGGCGTTTTTTTTTCTCCTTATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTTGGTGGCGATGTTACGTCGGGACTGTTCATCAAAAGCATCATTCCGGAAAGTCCGGCCGACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTAGAGCGCACCGTCAGGGAGCAGACCAATCCAATGGTGCTTCAAAAGAAAGTTCCACCACCAGTAACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACCAAAGAAACAACCCGTTGCAACACC GGAGGACAACAAGACAC                                                                                                                                               ]
[+] EMBL BM646007             [                     ccgcttGCGGTACGAGCAACTGCAACTAACTGCAGGCG TTTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTTACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCGACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTAGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGAGCGCACCGTCAGGGAGCAAACCAATCCAATGGTGCTTCAAAAGAAAGTTCCACCACCAGTGACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACCAAAGAAACAACCCGTTGCAACACC GGAGGACAACA                                                                                                                                                     ]
[+] EMBL BM622108             [                              ccgCGAGCAACTGCAACTAACTGCAGGCG TTTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTAACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCAACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGAGCGCACCGTCAGGGAGCAGACCAATCCAATGGTGCTTCAAAAGAAAGTTCCACCACCAGTAACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACCAAAGAAACAACCCGTTGCAACACCGGGAGGACAACAAGACACTTTCGGTGCCGAAAGCACGGCAAGAGTCTACCGATTCCGAAAACTCTTCCGACGATGAGGAAGACAGCCGTGAGATGGAAGGCAAAACCTTTACCAAAGCTGGTGTGGAGATCGATCGTGCATCGGCTGGCAATACCAAGATC]




>consensus_6685#0
CCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACGAGCAACTGCAACTAACTGCAGGCGT
TTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAG
CGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGA
GAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGG
CGATGTTACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCGACAAGTG
TGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTAGAAAATGC
TTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGT
TCAGAGCCTGGAGCGCACCGTCAGGGAGCAAACCAATCCAATGGTGCTTCAAAAGAAAGT
TCCACCACCAGTGACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACC
AAAGAAACAACCCGTTGCAACACCGGAGGACAACAAGACACTTTCGGTGCCGAAAGCACG
GCAAGAGTCTACCGATTCCGAAAACTCTTCCGACGATGAGGAAGACAGCCGTGAGATGGA
AGGCAAAACCTTTACCAAAGCTGGTGTGGAGATCGATCGTGCATCGGCTGGCAATACCAA
GATC

consensusID : consensus_6685#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [CCGCCCACGCGTCCGTGCGTGTTTGTGCACTGCCGTAGCCGTAGGACAGCACGTTTTAGCAGCCACGATCCGCAAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTAACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCAACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGA]

[+] EMBL BM609350             [CCGCCCACGCGTCCGTGCGTGTTTGTGCACTGCCGTAGCCGTAGGACAGCACGTTTTAGCAGCCACGATCCGCAAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTAACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCAACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGA]




>consensus_6685#1
CCGCCCACGCGTCCGTGCGTGTTTGTGCACTGCCGTAGCCGTAGGACAGCACGTTTTAGC
AGCCACGATCCGCAAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGC
TGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCG
GGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTAACGTCGGGACTGTTCA
TCAAAAGCATCATCCCGGAAAGTCCGGCCAACAAGTGTGGCGAACTGAAGATTGGCGATC
GAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGCTTCCCATGAGAAAGCCGTCAATT
ACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6685#0      CCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACGAGCAACTGCAACTAACTGCAGGCGT 60
consensus_6685#1      ------------CCGCCCACGCGTCCG----TGCGTGTTTGTGCACT--GCCGTAGCCGT 42
                                  ***************    * ** *    ****     * * ** ***

consensus_6685#0      TTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAG 120
consensus_6685#1      AGGACAGCACGT--TTTAG---CAGCCACGATCCGCAAGGACGGCAGAGATGACTGTTAG 97
                             * * *  * * *   * ** *  ** *   ***********************

consensus_6685#0      CGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGA 180
consensus_6685#1      CGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGA 157
                      ************************************************************

consensus_6685#0      GAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGG 240
consensus_6685#1      GAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGG 217
                      ************************************************************

consensus_6685#0      CGATGTTACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCGACAAGTG 300
consensus_6685#1      CGATGTAACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCAACAAGTG 277
                      ****** ********************************************* *******

consensus_6685#0      TGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTAGAAAATGC 360
consensus_6685#1      TGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGC 337
                      *************************************************** ********

consensus_6685#0      TTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGT 420
consensus_6685#1      TTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGT 397
                      ************************************************************

consensus_6685#0      TCAGAGCCTGGAGCGCACCGTCAGGGAGCAAACCAATCCAATGGTGCTTCAAAAGAAAGT 480
consensus_6685#1      TCAGAGCCTGGA------------------------------------------------ 409
                      ************                                                

consensus_6685#0      TCCACCACCAGTGACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACC 540
consensus_6685#1      ------------------------------------------------------------
                                                                                  

consensus_6685#0      AAAGAAACAACCCGTTGCAACACCGGAGGACAACAAGACACTTTCGGTGCCGAAAGCACG 600
consensus_6685#1      ------------------------------------------------------------
                                                                                  

consensus_6685#0      GCAAGAGTCTACCGATTCCGAAAACTCTTCCGACGATGAGGAAGACAGCCGTGAGATGGA 660
consensus_6685#1      ------------------------------------------------------------
                                                                                  

consensus_6685#0      AGGCAAAACCTTTACCAAAGCTGGTGTGGAGATCGATCGTGCATCGGCTGGCAATACCAA 720
consensus_6685#1      ------------------------------------------------------------
                                                                                  

consensus_6685#0      GATC 724
consensus_6685#1      ----