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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1154 fasta sequence
[AAATCAAGAAAGAAAGAAATAGAAAAAGAGAGAGAGAGAGATTATAGATTGAGCGAGAATGTGTGAGAGATGTTACAAAACAAAAAAGAAAAGAAGTTTAAGAGGATAAGTAAAGTGGACGTAATACGTTAACATTGAATTATTGAAGAAAACAAAAAACATTGAAACGTGCTTTTTAAATATTTTCTATATGAAGACATTACATTATATAGATATATATACATATATACAATTACCGAAACGACAAAAGAGGAAACCGGCGAGAAGAAGAAAGAAGAAAAAAAACGGAAATCACAATACACTCACTAAACAAAGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGCACAAATACACAGCAATCGCATAATGGTTGAATCGGAAGGAAACAAGAAAGTAAAACAAAAAAAACAAAAACAAAACCAAAAGAAAACAAATACAAACAGCATAAAACAAGACGCGAAAGTAGTCAGCGACAATGCGGTGAAACTAAAACAAATCAAAACACACAACAACATGACGACAGCCCGAAGACAAGAGCGTAGTAGGCGCGTTAGCGTTGCCGTTGCGTTAGCGTTGCATAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATAGATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAAAAACAAACCCGTGTACAATGCTAAGTCTCTATTCGTTATGACTA-AATGTTAGGATCATGCACCCAGTACGATCATCCCCGCGGTCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCCATTACCTACACACTCGCGTTTCTAAAGCAAAAAGGCTCAGTTTCTGTAATGTTACTCCTGTCACGAAAACACACACATACACACACAGCTAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTTTCTTTCTCTGCCTCACACAGTTTACCCAGCTAGAATCATGCGGATACGCGTTTGCGAACACGCCGTTTATTGCCCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGTGGTGGTGTGTGGTGGTGTACTGTGCATCAT]
[+] EMBL BX614447 [AAATCAAGAAAGAAAGAAATAGAAAAAGAGAGAGAGAGAGATTATAGATTGAGCGAGAATGTGTGAGAGATGTTACAAAACAAAAAAGAAAAGAAGTTTAAGAGGATAAGTAAAGTGGACGTAATACGTTAACATTGAATTATTGAAGAAAACAAAAAACATTGAAACGTGCTTTTTAAATATTTTCTATATGAAGACATTACATTATATAGATATATATACATATATACAATTACCGAAACGACAAAAGAGGAAACCGGCGAGAAGAAGAAAGAAGAAAAAAAACGGAAATCACAATACACTCACTAAACAAAGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGCACAAATACACAGCAATCGCATAATGGTTGAATCGGAAGGAAACAAGAAAGTAAAACAAAAAAAACAAAAACAAAACCAAAAGAAAACAAATACAAACAGCATAAAACAAGACGCGAAAGTAGTCAGCGA ]
[+] EMBL BX611967 [ ATACAATTACCGAAACGACAAAAGAGGAAACCGGCGAGAAGAAGAAAGAAG AAAAAAACGGAAATCACAATACACTCACTAAACAAAGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGCACAAATACACAGCAATCGCATAATGGTTGAATCGGAAGGAAACAAGAAAGTAAAACAAAAAAAACAAAAACAAAACCAAAAGAAAACAAATACAAACAGCATAAAACAAGACGCGAAAGTAGTCAGCGACAATGCGGTGAAACTAAAACAAATCAAAACACACAACAACATGACGACAGCCCGAAGACAAGAGCGTAGTAGGCGCGTTAGCGTTGCCGTTGCGTTAGCGTTGCATAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATAGATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAAAAACAAACCCGTGTACAATGCTAAGTCTCTATTCGTTATGACTA AATGTTAGGATCATGCACCCAGTACGATCATCCCCGCGGTCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCCATTACCTACACACTCGCG ]
[+] EMBL BX614932 [ ACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAAAAACAAACCCTTGTACAATGCTAAGTCTCTATTCGTTACGACTAGAATGTTAGGATCATGCACCCAGTACGATCATCCCCGCGGTCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCCATTACCTACACTCTCGCGTTTCTAAAGCAAAAAGGCTCAGTTTCTGTAATGTTACTCCTGTCACGAAAACACACACATACACACACAGCTAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTTTCTTTCTCTGCCTCACACAGTTTACCCAGCTAGAATCATGCGGATACGCGTTTGCGAACACGCCGTTTATTGCCCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGTGGTGGTGTGTGGTGGTGTACTGTGCATCAT]
consensusID : consensus_6694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 935 fasta sequence
[CCGAGGAAACTGACGGGAAGAAGAAGAAAAAAGGAAATCACAATACACTCACAAAACAAAACGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGCACAAATACACAGCAATCGCATAATGGTTGGATCGGAAGAAAACAAGAAAGTAAAACAAAGAAACAAAACCAAAAGAAAACAAACACAAACAGCATAAAACAAGACGCGAAAGTAGTCAGCGACAATGCGGTGAAACAAAAACAAATCAAAACACACACAACAAACGGACGACAGCCGGAAGACAAGAGCAAACGTAGTAGGCGCAAACGTTGCCGTTGCGTTAGCGTTGCAGAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATAGATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAACAAACCCGTGTACAATGCTAAGTCTCTATTCGTTACGACTAGAATGTTAGGATCATGCACACCCAGTACGATCATCCCCGCGGATCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCATTACCTACACTCTCGCGTTTCTAAAGCAAAAAGGCTCAGTTTCTGTAATGGTACTCCTGTCACGAAAACACTCACACTCACACACACACACAGAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTTTCCTTCTCTGCCTCACCAGTTTACCCAGCTAGAATCATGCCCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGTGGTGCTGTGTGGTGGTGTACTGTGCATCATTAACTTTAGTTTACCTGTTTCAGTTATCTTCGCGCTTTCTCCGCACCAACCAAGCGCGCCACAAT]
[+] EMBL BM635791 [CCGAGGAAACTGACGGGAAGAAGAAGAAAAAAGGAAATCACAATACACTCACAAAACAAAACGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGCACAAATACACAGCAATCGCATAATGGTTGGATCGGAAGAAAACAAGAAAGTAAAACAAAGAAACAAAACCAAAAGAAAACAAACACAAACAGCATAAAACAAGACGCGAAAGTAGTCAGCGACAATGCGGTGAAACAAAAACAAATCAAAACACACACAACAAACGGACGACAGCCGGAAGACAAGAGCAAACGTAGTAGGCGCAAACGTTGCCGTTGCGTTAGCGTTGCAGAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATAGATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAACAAACCCGTGTACAATGCTAAGTCTCTATTCGTTACGACTAGAATGTTAGGATCATGCACACCCAGTACGATCATCCCCGCGGATCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCATTACCTACACTCTCGCGTTTCTAAAGCAAAAAGGCTCAGTTTCTGTAATGGTACTCCTGTCACGAAAACACTCACACTCACACACACACACAG ]
[+] EMBL BX627440 [ AACGGACGACAGCCGGAAGACAAGAGCAAACGTAGTAGGCGCAAACGTTGCCGTTGCGTTAGCGTTGCAGAATGCAAACAAACAAAACAAGCAGAAACAACCGGAAGACGACGCAGTGTTAGCGAAATAGATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAACAAACCCGTGTACAATGCTAAGTCTCTATTCGTTACGACTAGAATGTTAGGATCATGCACACCCAGTACGATCATCCCCGCGGATCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCATTACCTACACTCTCGCGTTTCTAAAGCAAAATGGCTCAGTTTCTGTAATGTTACTCCTGTCACGAAAACACTCACACTCACACACACACAGCTAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTTTCCTTCTCTGCCTCACCAGTTTACCCAGCTAGAATCATGCCCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGTGGTGCTGTGTGGTGGTGTACTGTGCATCATTAACTTTAGTTTACCTGTTTCAGTTATCTTCGCGCTTTCTCCGCACCAACCAAGCGCGCCACAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6694#0 AAATCAAGAAAGAAAGAAATAGAAAAAGAGAGAGAGAGAGATTATAGATTGAGCGAGAAT 60
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 GTGTGAGAGATGTTACAAAACAAAAAAGAAAAGAAGTTTAAGAGGATAAGTAAAGTGGAC 120
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 GTAATACGTTAACATTGAATTATTGAAGAAAACAAAAAACATTGAAACGTGCTTTTTAAA 180
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 TATTTTCTATATGAAGACATTACATTATATAGATATATATACATATATACAATTACCGAA 240
consensus_6694#1 ------------------------------------------------------------
consensus_6694#0 ACGACAAAAGAGGAAACCGGCGAGAAGAAGAAAGAAGAAAAAAAACGGAAATCACAATAC 300
consensus_6694#1 -------CCGAGGAAACTGACGGGAAGAAGAAGAAAAAA-------GGAAATCACAATAC 46
******** * ** ********* ** ** **************
consensus_6694#0 ACTCACTAAACAAA--GCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGC 358
consensus_6694#1 ACTCACAAAACAAAACGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGC 106
****** ******* ********************************************
consensus_6694#0 ACAAATACACAGCAATCGCATAATGGTTGAATCGGAAGGAAACAAGAAAGTAAAACAAAA 418
consensus_6694#1 ACAAATACACAGCAATCGCATAATGGTTGGATCGGAAGAAAACAAGAAAGTAAAACAA-- 164
***************************** ******** *******************
consensus_6694#0 AAAACAAAAACAAAACCAAAAGAAAACAAATACAAACAGCATAAAACAAGACGCGAAAGT 478
consensus_6694#1 -----AGAAACAAAACCAAAAGAAAACAAACACAAACAGCATAAAACAAGACGCGAAAGT 219
* *********************** *****************************
consensus_6694#0 AGTCAGCGACAATGCGGTGAAACTAAAACAAATCAAAACACACA--ACAACATGACGACA 536
consensus_6694#1 AGTCAGCGACAATGCGGTGAAACAAAAACAAATCAAAACACACACAACAAACGGACGACA 279
*********************** ******************** **** *******
consensus_6694#0 GCCCGAAGACAAGAGC----GTAGTAGGCGCGTTAGCGTTGCCGTTGCGTTAGCGTTGCA 592
consensus_6694#1 GCCGGAAGACAAGAGCAAACGTAGTAGGCGCA--AACGTTGCCGTTGCGTTAGCGTTGCA 337
*** ************ *********** * ************************
consensus_6694#0 TAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATA 652
consensus_6694#1 GAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATA 397
***********************************************************
consensus_6694#0 GATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATA 712
consensus_6694#1 GATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATA 457
************************************************************
consensus_6694#0 CATAGAGAACGTTAATCTGTAAGAAAAAAAACAAACCCGTGTACAATGCTAAGTCTCTAT 772
consensus_6694#1 CATAGAGAACGTTAATCTGTAAGAAAAA---CAAACCCGTGTACAATGCTAAGTCTCTAT 514
**************************** *****************************
consensus_6694#0 TCGTTATGACTA-AATGTTAGGATCATGCAC--CCAGTACGATCATCCCCGCGG-TCGAA 828
consensus_6694#1 TCGTTACGACTAGAATGTTAGGATCATGCACACCCAGTACGATCATCCCCGCGGATCGAA 574
****** ***** ****************** ********************* *****
consensus_6694#0 GCGCGAAACAGCAGTACGGCGGCCATTACCCATTACCTACACACTCGCGTTTCTAAAGCA 888
consensus_6694#1 GCGCGAAACAGCAGTACGGCGGCCATTACC-ATTACCTACACTCTCGCGTTTCTAAAGCA 633
****************************** *********** *****************
consensus_6694#0 AAAAGGCTCAGTTTCTGTAATGTTACTCCTGTCACGAAAACACACACAT----ACACACA 944
consensus_6694#1 AAAAGGCTCAGTTTCTGTAATGGTACTCCTGTCACGAAAACACTCACACTCACACACACA 693
********************** ******************** **** *******
consensus_6694#0 CAGCTAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTT 1004
consensus_6694#1 CACAGAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTT 753
** *******************************************************
consensus_6694#0 TCTTTCTCTGCCTCACACAGTTTACCCAGCTAGAATCATGCGGATACGCGTTTGCGAACA 1064
consensus_6694#1 TCCTTCTCTGCCTCAC-CAGTTTACCCAGCTAGAATCATGC------------------- 793
** ************* ************************
consensus_6694#0 CGCCGTTTATTGCCCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGT 1124
consensus_6694#1 -------------CCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGT 840
***********************************************
consensus_6694#0 GGTGGTGTGTGGTGGTGTACTGTGCATCAT------------------------------ 1154
consensus_6694#1 GGTGCTGTGTGGTGGTGTACTGTGCATCATTAACTTTAGTTTACCTGTTTCAGTTATCTT 900
**** *************************
consensus_6694#0 -----------------------------------
consensus_6694#1 CGCGCTTTCTCCGCACCAACCAAGCGCGCCACAAT 935
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||