cluster # 6695

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Anopheles gambiae
cluster # 6695 cluster # 6695 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6695#0 length = 766 sequences # 4

consensus_6695#1 length = 475 sequences # 1

consensusID : consensus_6695#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 766
fasta sequence

                              [CCGACCAATCGTACCACAGCAACTGCTGCTATTACTACTTCTTTTACTATATCTACTACTACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTCCGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAATGGCGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACCCGGTAGTAGTATTTACCGATTGGATGTTAATAATTCTTTCCCAAGTATGTAAATATGCGCTAACTCTCTCACTTTCTCTCAATTTCTCAATCACTTTCGCACATACGCAATGCCGTCGTTTGATGCTACTTCTTTGCGCGATTGTGCGCGCAAAAACTGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTATGTTGCCGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCTCTAGAGCTCTAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGCAGGCGAAGGCGCGACCATGCGTCCATACTAAGAAAAAAAAAACAAAGTGCTTTAAAAACTGTGGAAACCTCGGTGTAACCTTGAGATGATTTAGGGAGAAAAAGAAAACATAGAACGACAACAAAAAACATAAGATACACATACACACACGCAAACAATTGTATGTTTTTAATGATATCAATAAAGCAAAAACCACA]

[+] EMBL BM577067             [CCGACCAATCGTACCACAGCAACTGCTGCTATTACTACTTCTTTTACTATATCTACTACTACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTCCGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAATGGCGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACCCGGTAGTAGTATTTACCGATTGGATGTTAATAATTCTTTCCCAAGTATGTAAATATGCGCTAACTCTCTCACTTTCTCTCAATTTCTCAATCACTTTCGCACATACGCAATGCCGTCGTTTGATGCTACTTCTTTGCGCGATTGTGCGCGCAAAAACTGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTATGTTGCCGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCTCTAGAGCTCTAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGCAGGCGAAGGCGCGACCATGCGTC                                                                                                                                                                              ]
[+] EMBL BM577794             [             CCGCAGCAACTGCTGCTATTACTACTTCTTTTACTATATCTACTACTACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTCCGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAATGGCGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACCCGGTAGTAGTATTTACCGATTGGATGTTAATAATTCTTTCCCAAGTATGTAAATATGCGCTAACTCTCTCACTTTCTCTCAATTTCTCAATCACTTTCGCACATACGCAATGCCGTCGTTTGATGCTACTTCTTTGCGCGATTGTGCGCGCAAAAACTGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTATGTTGCCGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCTCTAGAGCTCTAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGCAGGCGAAGGCGCGACCATGCGTCCATACTAAGAAAAAAAAAACAAAGTGCTTTAAAAACTGTGGAAACCT                                                                                                                               ]
[+] EMBL BX613938             [                                      TTCTTTTACTATATCTACTACTACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTCCGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAATGGCGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL BX618933             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAAGGCGCGACCATGCGTCCATACTAAGAAAAAAAAAACAAAGTGCTTTAAAAACTGT GAAACCTCGGTGTAACCTTGAGATGATTTAGGGAGAAAAAGAAAACATAGAACGACAACAAAAAACATAAGATACACATACACACACGCAAACAATTGTATGTTTTTAATGATATCAATAAAGCAAAAACCACA]




>consensus_6695#0
CCGACCAATCGTACCACAGCAACTGCTGCTATTACTACTTCTTTTACTATATCTACTACT
ACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTC
CGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAA
TGGCGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTACCGT
CAAAGTATCTAGCTAGGCGATAGAACCCGGTACCCGGTAGTAGTATTTACCGATTGGATG
TTAATAATTCTTTCCCAAGTATGTAAATATGCGCTAACTCTCTCACTTTCTCTCAATTTC
TCAATCACTTTCGCACATACGCAATGCCGTCGTTTGATGCTACTTCTTTGCGCGATTGTG
CGCGCAAAAACTGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTATGTTGCCGT
TGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCTCTAGAGCTCTAGAGCAGTG
CAGGGCTGTGGTGGAATTTGAATAGTAGCAGGCGAAGGCGCGACCATGCGTCCATACTAA
GAAAAAAAAAACAAAGTGCTTTAAAAACTGTGGAAACCTCGGTGTAACCTTGAGATGATT
TAGGGAGAAAAAGAAAACATAGAACGACAACAAAAAACATAAGATACACATACACACACG
CAAACAATTGTATGTTTTTAATGATATCAATAAAGCAAAAACCACA

consensusID : consensus_6695#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [CCGCGGACGCGTGGGGAGGGTGCGAAGGAGGGAGGAGAAGAGTACCTCTCCTTCCGCCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACGGTAGTAGTATTTACCGATTGGATGTTAATAATTCCTTCCCGAGTATGTAAATATGCGCTAACTCTTTCTCTCTCTCTCTTTCTCAATCACTTTCGCATACGCAATGCCGCAATGTCGTTTGATGCTACTTCTTTGCGCGATTGTGCGCGCAAACCGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTGTATGTTGCTGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCCTAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGAGGGCGAAGGCGCAACCATGCGTCCATACTAAGAAGAAGAAAAAAACAAAGTGCTTTAAAAACTGTGAAACCTCGGTG]

[+] EMBL BM619350             [CCGCGGACGCGTGGGGAGGGTGCGAAGGAGGGAGGAGAAGAGTACCTCTCCTTCCGCCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACGGTAGTAGTATTTACCGATTGGATGTTAATAATTCCTTCCCGAGTATGTAAATATGCGCTAACTCTTTCTCTCTCTCTCTTTCTCAATCACTTTCGCATACGCAATGCCGCAATGTCGTTTGATGCTACTTCTTTGCGCGATTGTGCGCGCAAACCGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTGTATGTTGCTGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCCTAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGAGGGCGAAGGCGCAACCATGCGTCCATACTAAGAAGAAGAAAAAAACAAAGTGCTTTAAAAACTGTGAAACCTCGGTG]




>consensus_6695#1
CCGCGGACGCGTGGGGAGGGTGCGAAGGAGGGAGGAGAAGAGTACCTCTCCTTCCGCCGC
TGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACGGTAGTAG
TATTTACCGATTGGATGTTAATAATTCCTTCCCGAGTATGTAAATATGCGCTAACTCTTT
CTCTCTCTCTCTTTCTCAATCACTTTCGCATACGCAATGCCGCAATGTCGTTTGATGCTA
CTTCTTTGCGCGATTGTGCGCGCAAACCGCTAAGCAATGGATACATTTGACCGTGTGGGA
CCGTGTGTATGTTGCTGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCCT
AGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGAGGGCGAAGGCGCAACCATGCGT
CCATACTAAGAAGAAGAAAAAAACAAAGTGCTTTAAAAACTGTGAAACCTCGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6695#0      CCGACCAATCGTACCACAGCAACTGCTGCTATTACTACTTCTTTTACTATATCTACTACT 60
consensus_6695#1      ------------------------------------------------------------
                                                                                  

consensus_6695#0      ACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTC 120
consensus_6695#1      ------------------------------------------------------------
                                                                                  

consensus_6695#0      CGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAA 180
consensus_6695#1      --------------------------------------------CCGCGGACGCGTGGGG 16
                                                                        *  * *    

consensus_6695#0      TGG---CGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTAC 237
consensus_6695#1      AGGGTGCGAAGGAGGGAGGAGAAGAGTACCTCTCCTTCCGCCGCTGTGGCCCTCCGGTAC 76
                       **   *** ** * ** *    ****************  *******************

consensus_6695#0      CGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACCCGGTAGTAGTATTTACCGATTGG 297
consensus_6695#1      CGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTAC--GGTAGTAGTATTTACCGATTGG 134
                      ************************************  **********************

consensus_6695#0      ATGTTAATAATTCTTTCCCAAGTATGTAAATATGCGCTAACTCTCTCACTTTCTCTCAAT 357
consensus_6695#1      ATGTTAATAATTCCTTCCCGAGTATGTAAATATGCGCTAACTCTTTCTCTCTCTCTC--T 192
                      ************* ***** ************************ ** ** ******  *

consensus_6695#0      TTCTCAATCACTTTCGCACATACGCAATGCCG-----TCGTTTGATGCTACTTCTTTGCG 412
consensus_6695#1      TTCTCAATCACTTTCGCA--TACGCAATGCCGCAATGTCGTTTGATGCTACTTCTTTGCG 250
                      ******************  ************     ***********************

consensus_6695#0      CGATTGTGCGCGCAAAAACTGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGT-- 470
consensus_6695#1      CGATTGTGCGCGCAAA--CCGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTGT 308
                      ****************  * **************************************  

consensus_6695#0      ATGTTGCCGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCTCTAGAGCTC 530
consensus_6695#1      ATGTTGCTGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGC---------C 359
                      ******* ******************************************         *

consensus_6695#0      TAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGCAGGCGAAGGCGCGACCATGCG 590
consensus_6695#1      TAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGAGGGCGAAGGCGCAACCATGCG 419
                      **************************************  *********** ********

consensus_6695#0      TCCATACTAAGAAAAA---AAAAACAAAGTGCTTTAAAAACTGTGGAAACCTCGGTGTAA 647
consensus_6695#1      TCCATACTAAGAAGAAGAAAAAAACAAAGTGCTTTAAAAACTGTG-AAACCTCGGTG--- 475
                      ************* **   ************************** ***********   

consensus_6695#0      CCTTGAGATGATTTAGGGAGAAAAAGAAAACATAGAACGACAACAAAAAACATAAGATAC 707
consensus_6695#1      ------------------------------------------------------------
                                                                                  

consensus_6695#0      ACATACACACACGCAAACAATTGTATGTTTTTAATGATATCAATAAAGCAAAAACCACA 766
consensus_6695#1      -----------------------------------------------------------