cluster # 6700

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Anopheles gambiae
cluster # 6700 cluster # 6700 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6700#0 length = 810 sequences # 5

consensus_6700#1 length = 463 sequences # 1

consensusID : consensus_6700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 810
fasta sequence

                              [GCAGAATCCGCACGAGNGAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATGGTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTAT-GAATTCTCGAGCAAATACCA-ATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAA----CAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACATTGGTGGCTGTAGTGGAAGGATGATTAATAGT-AAATTCCTAGAAGTA-GGAATTAGCACACATCAGTAACTAGCAGTGCGCAACATTTTATA-GTCTATTAGGACGTCTTCCC-TTTGCGTTCCAAAGTCAGTACGAAACATGATTATC-GTAGNGTGTTTAAACCATTAGACAGGGTCTTAATGAGGG-AAAGT-NTTGANGAACNA-ATGTTCATTGGTTCATAGCAACTAACAATTATCTGTCCAAATAGTGCAGGTTAGATTTTGA]

[+] EMBL BX466161             [GCAGAATCCGCACGAGNGAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATGGTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTAT GAATTCTCGAGCAAATACCA ATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAA    CAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACATTGGTGGCTGTAGTGGAAGGATGATTAATAGTCAAATTCCTAGAAGTACGGAATTAGCACACATCAGTAACTAGCAGTGCGCAACATTTTATAGGTCTATTAGGACGTCTTCCCTTTTGCGTTCCAAAGTCAGTACGAAACATGATTATC GTAGNGTGTTTAAACCATTAGACAGGGTCTTAATGAGGG AAAGT NTTGANGAACNA ATGTTC                                                       ]
[+] EMBL BM636848             [                                                                                                               ccgGAAATTATTTATGGAATTCTCGAGCAAATACCACATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAGACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGGATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAA    CAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACATTGGTGGCTGTAGTGGAAGGATGA                                                                                                                                                                                                                                                       ]
[+] EMBL BM631591             [                                                                                                                                     cCGAGCAAATACCA ATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAA    CAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACATTGGTGGCTGTAGTGGAAGGATGATTAATAGT AAATTCCTAGAAGTA GGAATTAGCAC                                                                                                                                                                                                                   ]
[+] EMBL BX617408             [                                                                                                                                              TACCA ATACGGTTATTAGCCCGTTATCTAATAATTTACTGCGATGATGATGGTAGTGCGAATGTGCTACACACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAATGCATCTACGACGTCATAAAACAGTCAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATGTTTCGTTGTATTGACGGCACCGCTGCATCTTACATTGGTGGCTGTAGTAGAAGGATGATTAATAGT AAATTCCTAGAAGTA GGAATTAGCACACATCAGTAACTAGCAGTGCGCAACATTTTATA GTCTATTAGGACGTCTTCCC TTTGCGTTCCAAAGTCAG                                                                                                                                          ]
[+] EMBL BX623975             [                                                                                                                                                                                                                       CATAATGTTCTTTTCTGAAACAACGTTCT  TGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAA    CAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACATTGGTGGCTGTAGTGGAAGGATGATTAATAGT AAATTCCTAGAAGTA GGAATTAGCACACATCAGTAACTAGCAGTGCGCAACATTTTATA GTCTATTAGGACGTCTTCCC TTTGCGTTCCAAAGTCAGTACGAAACATGATTATCAGTAGTGTG TTAAA CATTAGACA GCTC TAATGAGGGAAAAGTAATAGAAGAACAATATGTTCATTGGTTCATAGCAACTAACAATTATCTGTCCAAATAGTGCAGGTTAGATTTTGA]




>consensus_6700#0
GCAGAATCCGCACGAGNGAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAA
TGATTATGGTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATT
ATTTATGAATTCTCGAGCAAATACCAATACGGTTATGAGCCCGTTATCTAATAATTTACT
GCGATGATGATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAAACAACGTT
CTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGG
TATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCC
TGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAAC
ATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAACAGATATTTGTCTTGCTATCG
GAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCA
TCTTACATTGGTGGCTGTAGTGGAAGGATGATTAATAGTAAATTCCTAGAAGTAGGAATT
AGCACACATCAGTAACTAGCAGTGCGCAACATTTTATAGTCTATTAGGACGTCTTCCCTT
TGCGTTCCAAAGTCAGTACGAAACATGATTATCGTAGNGTGTTTAAACCATTAGACAGGG
TCTTAATGAGGGAAAGTNTTGANGAACNAATGTTCATTGGTTCATAGCAACTAACAATTA
TCTGTCCAAATAGTGCAGGTTAGATTTTGA

consensusID : consensus_6700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [AAGGTATGGTTCGTTTATTACACTATCTATCGATTATTAGAAATTGATAACAACACAGTTTAGCAACTTAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATGGTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTATGAATTCTCGAGCAAATACCAATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACACACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTG]

[+] EMBL BX605082             [AAGGTATGGTTCGTTTATTACACTATCTATCGATTATTAGAAATTGATAACAACACAGTTTAGCAACTTAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATGGTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTATGAATTCTCGAGCAAATACCAATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACACACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTG]




>consensus_6700#1
AAGGTATGGTTCGTTTATTACACTATCTATCGATTATTAGAAATTGATAACAACACAGTT
TAGCAACTTAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATGG
TAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTATGAA
TTCTCGAGCAAATACCAATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATG
ATGATAGTGCGAATGTGCTACACACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCA
CTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAA
AAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTA
GAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6700#0      ----------------------------------------------------GCAGAATC 8
consensus_6700#1      AAGGTATGGTTCGTTTATTACACTATCTATCGATTATTAGAAATTGATAACAACACAGTT 60
                                                                           ** * * 

consensus_6700#0      CGCACGAGNGAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATG 68
consensus_6700#1      TA-GCAACTTAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATG 119
                          * *   **************************************************

consensus_6700#0      GTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTATGA 128
consensus_6700#1      GTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTATGA 179
                      ************************************************************

consensus_6700#0      ATTCTCGAGCAAATACCAATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGAT 188
consensus_6700#1      ATTCTCGAGCAAATACCAATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGAT 239
                      ************************************************************

consensus_6700#0      GATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAAACAACGTTCTAATGTC 248
consensus_6700#1      GATGATAGTGCGAATGTGCTACACACATAATGTTCTTTTCTGAAACAACGTTCTAATGTC 299
                      *********************** ************************************

consensus_6700#0      ACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAA 308
consensus_6700#1      ACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAA 359
                      ************************************************************

consensus_6700#0      AAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACT 368
consensus_6700#1      AAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACT 419
                      ************************************************************

consensus_6700#0      AGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAA 428
consensus_6700#1      AGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTG---------------- 463
                      ********************************************                

consensus_6700#0      TGAAAAGAAAAGCATCTACGACGTCATAAAACAGATATTTGTCTTGCTATCGGAGTGCAA 488
consensus_6700#1      ------------------------------------------------------------
                                                                                  

consensus_6700#0      TGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACAT 548
consensus_6700#1      ------------------------------------------------------------
                                                                                  

consensus_6700#0      TGGTGGCTGTAGTGGAAGGATGATTAATAGTAAATTCCTAGAAGTAGGAATTAGCACACA 608
consensus_6700#1      ------------------------------------------------------------
                                                                                  

consensus_6700#0      TCAGTAACTAGCAGTGCGCAACATTTTATAGTCTATTAGGACGTCTTCCCTTTGCGTTCC 668
consensus_6700#1      ------------------------------------------------------------
                                                                                  

consensus_6700#0      AAAGTCAGTACGAAACATGATTATCGTAGNGTGTTTAAACCATTAGACAGGGTCTTAATG 728
consensus_6700#1      ------------------------------------------------------------
                                                                                  

consensus_6700#0      AGGGAAAGTNTTGANGAACNAATGTTCATTGGTTCATAGCAACTAACAATTATCTGTCCA 788
consensus_6700#1      ------------------------------------------------------------
                                                                                  

consensus_6700#0      AATAGTGCAGGTTAGATTTTGA 810
consensus_6700#1      ----------------------