cluster # 6704

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Anopheles gambiae
cluster # 6704 cluster # 6704 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6704#0 length = 706 sequences # 3

consensus_6704#1 length = 676 sequences # 2
consensus_6704#2 length = 669 sequences # 1

consensusID : consensus_6704#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 706
fasta sequence

                              [ATCGGCACGAGGGGAAAGAGAGAGAGAGAGAGTGAAGAAAAGA---CCCAGTCAATTCCTTAGCCTTTCTCGCCACTAATCCGGTGGGTGCCCAAAGCAAGGAGGTGGCGATTTGGTCGAAGCGTAATTGAATTAT-CTACCCTCCCGTGTAACAGTAACAGAGGGGGCAACCCTTACGAGTGTGTGGACCG-GCGGAGAAGACACACACACACACGGGCGATTTTCGGAGAGGACATCCATCCACACAAGTTCACCAGCATGAAAGCGATCGAAGCAAAAATTGTCGTACTTGGATCGCAAGGTGTGGGCAAAACGAGCCTGGTGGTGCGGTATGTCTCGAACGTGTACACGAAGGAAATATCGCCCACGATCGGTGCGTCCTTTTTCACCTGCAAGGTCAATCTGGAGGACTTTAAAGTAAAGATGCAGGTTTGGGATACGGCGGGCCAGGAACGGTTCAAAGCGATGGCCCCGCTGTACTATCGCAACGCGAACGCCGCCCTGCTCGTGTTCGATCTCACGCAGTACAACTCGTTCAACGAAATCAAGGGCTGGGTACAGGAGCTGCAACGGAACGTGCAGGAACCGATGGTACTGTCGCTCGTCGGCAACAAGCTCGACCTGGAAGCGAAACGTGCCGTCTCCCGGGAAGAGGCTATGCTGTACGCGAACTCGATCGGGGGCAACTACTTCGAAACGTCCGCCTTAC]

[+] EMBL BX619327             [ATCGGCACGAGGGGAAAGAGAGAGAGAGAGAGTGAAGAAAAGA   CCCAGTCAATTCCTTAGCCTTTCTCGCCACTAATCCGGTGGGTGCCCAAAGCAAGGAGGTGGCGATTTGGTCGAAGCGTAATTGAATTAT CTACCCTCCCGTGTAACAGTAACAGAGGGGGCAACCCTTACGAGTGTGTGGACCG GCGGAGAAGACACACACACACACGGGCGATTTTCGGAGAGGACATCCATCCACACAAGTTCACCAGCATGAAAGCGATCGAAGCAAAAATTGTCGTACTTGGATCGCAAGGTGTGGGCAAAACGAGCCTGGTGGTGCGGTATGTCTCGAACGTGTACACGAAGGAAATATCGCCCACGATCGGTGCGTCCTTTTTCACCTGC ANNTCAATCTGGA                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX625494             [                      AGAGAGAGAGTGAAGAAAAGACTCCCCAGTCAATTCCTTAGCCTTTCTCGCCACTAATCCGGTGGGTGCCCAAAGCAAGGAGGTGGCGATTTGGTCGAAGCGTAATTGAATTAT CTACCCTCCCGTGTAACAGTAACAGAGGGGGCAACCCTTACGAGTGTGTGGACCG GCGGAGAAGACACACACACACACGGGCGATTTTCGGAGAGGACATCCATCCACACAAGTTCACCAGCATGAAAGCGATCGAAGCAAAAATTGTCGTACTTGGATCGCAAGGTGTGGGCAAAACGAGCCTGGTGGTGCGGTATGTCTCGAACGTGTACACGAAGGAAATATCGCCCACGATCGGTGCGTCCTTTTTCACCTGCAAGGTCAATCTGGAGGACTTTAAAGTAAAGATGCAGGTTTGGGATACGGCGGGCCAGGAACGGTTCAAAGCGATGGCCCCGCTGTACTATCGCAACGCGAACGCCGCCCTGCTCGTGTTCGATCTCACGCAGTACAACTCGTTCAACGAAATCAAGGGCTGGGTACAGGAGCTGCAACGGAACGTGCAGGAACCGATGGTACTGTCGCTCGTCGGCAACAAGCTCGACCTGGAAGCGAAACGTGCCGTCTCCCGGGAAGAGGCTATGCTGTACGCGAACTCGATCGGGGGCAACTACTTCGAAACGTCCGCCTTAC]
[+] EMBL BX625502             [                                                                    CTCGNCACTAATCCGGTGGGTGCCCAAAGCAANGAGGTGGCGATTTGGTNGAAGCGTAATTGAATTATGCTACCCTCCCGTGTAACAGTAACAGAGGGGGCAACCCTTACGATTGTGTGGACCGTGCGGAGAAGACACACACACNCACGGGCGATTTTCGGAGAGGACATCCATCCACACNAGTTCACCANCATGAAAGCGATCGAAGCNAAAATTGTCGTACTTGGATCGCAAGGTGTGGGCAAAACGAGCCTGGTGGTGCGGNATGTCTCGAACGTGTACACNAAGGAAATATCGCCCACGATCGGTGCGTCCTTTTTCACCTGCAAGGTCAATCTGGAGGACTTTAAAGTAAAGATGCANGTTTGGGATACNGCGGGCCAGGAACGGTTCAAAGCGATGGCCCCGCTGTACTATCGCAA                                                                                                                                                                                                                             ]




>consensus_6704#0
ATCGGCACGAGGGGAAAGAGAGAGAGAGAGAGTGAAGAAAAGACCCAGTCAATTCCTTAG
CCTTTCTCGCCACTAATCCGGTGGGTGCCCAAAGCAAGGAGGTGGCGATTTGGTCGAAGC
GTAATTGAATTATCTACCCTCCCGTGTAACAGTAACAGAGGGGGCAACCCTTACGAGTGT
GTGGACCGGCGGAGAAGACACACACACACACGGGCGATTTTCGGAGAGGACATCCATCCA
CACAAGTTCACCAGCATGAAAGCGATCGAAGCAAAAATTGTCGTACTTGGATCGCAAGGT
GTGGGCAAAACGAGCCTGGTGGTGCGGTATGTCTCGAACGTGTACACGAAGGAAATATCG
CCCACGATCGGTGCGTCCTTTTTCACCTGCAAGGTCAATCTGGAGGACTTTAAAGTAAAG
ATGCAGGTTTGGGATACGGCGGGCCAGGAACGGTTCAAAGCGATGGCCCCGCTGTACTAT
CGCAACGCGAACGCCGCCCTGCTCGTGTTCGATCTCACGCAGTACAACTCGTTCAACGAA
ATCAAGGGCTGGGTACAGGAGCTGCAACGGAACGTGCAGGAACCGATGGTACTGTCGCTC
GTCGGCAACAAGCTCGACCTGGAAGCGAAACGTGCCGTCTCCCGGGAAGAGGCTATGCTG
TACGCGAACTCGATCGGGGGCAACTACTTCGAAACGTCCGCCTTAC

consensusID : consensus_6704#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 676
fasta sequence

                              [CCGATTTTCCACACACAAGAAGACGACTGGCTGGCTCGCAACAGAAGGAAAGCGGAGCGTGCGTGTCTGTGACTCCTGCCCCGCACCCCATGGCTGTGTGAAAACGGACCAAAAGGAAAAGAAACGAAGTGATTACGGGAAAACCGT-----GAAAAAAAAACAGTTTTTCGTGTGCCTGCGTGAAAATTCAAGCGTGATTTTTGTGTACCCAGTTTGATAACCTTCTCCAAAAACTCCGCTCGCGGCGGCCTTCTCCCCCCTCCGGATGTGCATGTTTGTGAAGCTCCGTGTGTTTTGTGTTCCTGTTGCGCAGCGGAGTTTCTAGTTCTCGAAGTTTTCTTTGGTTGCTGTTCGCTGTCGCTACCCTTCCACACCCC-C-GTTTGGCACAAGTTTTCCGTACGCATGCTGGCCCCCGTGCGCTATGAGTGAAAGGTGCCGTCGGTTGGCAGGCATTGGCAGCAACAGCGCACCGAGCGGAGCAACCGAACTGCGAATTTACGGCATTGGCAGGTGGTGGAAACGGTCCAAGCAGCAGCGGAGAGGCGAGGGCGCTCCACCGTGTAACGACGGGTGTGGGCAAAACGAGCCTGGTGGTGCGGTATGTCTCGAACGTGTACACGAAGGAAATATCGCCCACGATCGGTGCGTCCTTTTTCACCTGCAAGGTCAATCTGGAGGA]

[+] EMBL BM588212             [CCGATTTTCCACACACAAGAAGACGACTGGCTGGCTCGCAACAGAAGGAAAGCGGAGCGTGCGTGTCTGTGACTCCTGCCCCGCACCCCATGGCTGTGTGAAAACGGACCAAAAGGAAAAGAAACGAAGTGATTACGGGAAAACCGT     GAAAAAAAAACAGTTTTTCGTGTGCCTGCGTGAAAATTCAAGCGTGATTTTTGTGTACCCAGTTTGATAACCTTCTCCAAAAACTCCGCTCGCGGCGGCCTTCTCCCCCCTCCGGATGTGCATGTTTGTGAAGCTCCGTGTGTTTTGTGTTCCTGTTGCGCAGCGGAGTTTCTAGTTCTCGAAGTTTTCTTTGGTTGCTGTTCGCTGTCGCTACCCTTCCACACCCC C GTTTGGCACAAGTTTTCCGTACGCATGCTGGCCCCCGTGCGCTATGAGTGAAAGGTGCCGTCGGTTGGCAGGCATTGGCAGCAACAGCGCACCGAGCGGAGCAACCGAACTGCGAATTTACGGCATTGGCAGGTGGTGGAAACGGTCCAAGCAGCAGCGGAGAGGCGAGGGCGCTCCACCGTGTAACGACGGGT                                                                                                           ]
[+] EMBL BX620743             [                         nCTGGCTGGCTCGCAGCAGAAGGAAAGCGGAACGTGCGTGTCTGTGACTCCTGCCCCGCACCCCATGGCTGTGTGAAAACGGACCAAAAGAAAAAGAAACGAAGTGATTACGGGAAAACCGTGAAAAGAAAAAAAAACAGTTTTTCGTGTGCCTGCGTGAAAATTCAAGCGTCATTTTTGTGTACCCAGTTTGATAACCTTCTCCAAAAACTCCGCTCGCGGCGGC     CCCCCCTCCGGATGTGCATGTTTGTGAAGCTCCGTGTGTTTTGTGTTCCTGTTGCGCAGCGGAGTTTCTAGTTCTCGAAGTTTTCTTTGGTTGCTGTTCGCTGTCGCTACCCTTCCACACCCCACTGTTTGGCACAAGTTTTCCGTACGCATGCTGGCCCCCGTGCGCTATGAGTGAAAGGTGCCGTCGGTTGGCAGGCATTGGCAGCAACAGCGCACCGAACGGAGCAACCGAACTGCGAATTGACGGCATTGGCAGGCGGTGGAAACGGTCGAAGCAGCAGCGGAGAGGCGAGGGCGCTCCACCGTGTAACGACGGGTGTGGGCAAAACGAGCCTGGTGGTGCGGTATGTCTCGAACGTGTACACGAAGGAAATATCGCCCACGATCGGTGCGTCCTTTTTCACCTGCAAGGTCAATCTGGAGGA]




>consensus_6704#1
CCGATTTTCCACACACAAGAAGACGACTGGCTGGCTCGCAACAGAAGGAAAGCGGAGCGT
GCGTGTCTGTGACTCCTGCCCCGCACCCCATGGCTGTGTGAAAACGGACCAAAAGGAAAA
GAAACGAAGTGATTACGGGAAAACCGTGAAAAAAAAACAGTTTTTCGTGTGCCTGCGTGA
AAATTCAAGCGTGATTTTTGTGTACCCAGTTTGATAACCTTCTCCAAAAACTCCGCTCGC
GGCGGCCTTCTCCCCCCTCCGGATGTGCATGTTTGTGAAGCTCCGTGTGTTTTGTGTTCC
TGTTGCGCAGCGGAGTTTCTAGTTCTCGAAGTTTTCTTTGGTTGCTGTTCGCTGTCGCTA
CCCTTCCACACCCCCGTTTGGCACAAGTTTTCCGTACGCATGCTGGCCCCCGTGCGCTAT
GAGTGAAAGGTGCCGTCGGTTGGCAGGCATTGGCAGCAACAGCGCACCGAGCGGAGCAAC
CGAACTGCGAATTTACGGCATTGGCAGGTGGTGGAAACGGTCCAAGCAGCAGCGGAGAGG
CGAGGGCGCTCCACCGTGTAACGACGGGTGTGGGCAAAACGAGCCTGGTGGTGCGGTATG
TCTCGAACGTGTACACGAAGGAAATATCGCCCACGATCGGTGCGTCCTTTTTCACCTGCA
AGGTCAATCTGGAGGA

consensusID : consensus_6704#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [CCGGCGGAACGTGCGTCTCTGTGACTCCTCCCCCGCACCCCATGGTTGTGTGAAAACGGACCAAAAGAAAAAGAAACGAAGTGGTTACGGGAAAACCGTGAAAAGAAAAAAACAGTTTTTCGTGTGCCTGCGTGAAAATTCAAGCGTGATTTTTGTGTACCCAGTTTGATAACCTTCTCCAAAAACTCCGCTCGCGGCGGCCCCCCCTCCGGATGTGCATGTTTGTGAAGCTCCGTGTGTTTTGTGTTCCTGTTGCGCAGCCGAGTTTCTAGTTCTCGAAGTTTTCTTTGGTTGCTGTTCGCTGTCGCTACCCTTCCACACCCCCGTTTGGCACAAGTTTTCCGTACGCATGCTGGCCCCCGTGCGCTATGAGTGAAAGGTGCCGTCGGTTGGCAGGCATTGGCAGCAACAGCGCACCGAACGGAGCAACCGAACTGCGAATTGACGGCATTGGCAGGTGGTGGAAACGGTCGAAGCAGCAGCGGAGAGGCGAGGGAGCTCCACCGTGTAACGACGGGTTCGTGTTGGCATGGTTGTGTACCGCGGAACGTAACGCCTTGTGTGTACGGTTGTCGTGCTCGTGCTCGTCGTGACGTGCTTCGATGTAACTAACGTGGATGCTGGGAAAGGCACCTCACATTCACTCCCAATAACTCCCGCAACTCCCCC]

[+] EMBL BM655345             [CCGGCGGAACGTGCGTCTCTGTGACTCCTCCCCCGCACCCCATGGTTGTGTGAAAACGGACCAAAAGAAAAAGAAACGAAGTGGTTACGGGAAAACCGTGAAAAGAAAAAAACAGTTTTTCGTGTGCCTGCGTGAAAATTCAAGCGTGATTTTTGTGTACCCAGTTTGATAACCTTCTCCAAAAACTCCGCTCGCGGCGGCCCCCCCTCCGGATGTGCATGTTTGTGAAGCTCCGTGTGTTTTGTGTTCCTGTTGCGCAGCCGAGTTTCTAGTTCTCGAAGTTTTCTTTGGTTGCTGTTCGCTGTCGCTACCCTTCCACACCCCCGTTTGGCACAAGTTTTCCGTACGCATGCTGGCCCCCGTGCGCTATGAGTGAAAGGTGCCGTCGGTTGGCAGGCATTGGCAGCAACAGCGCACCGAACGGAGCAACCGAACTGCGAATTGACGGCATTGGCAGGTGGTGGAAACGGTCGAAGCAGCAGCGGAGAGGCGAGGGAGCTCCACCGTGTAACGACGGGTTCGTGTTGGCATGGTTGTGTACCGCGGAACGTAACGCCTTGTGTGTACGGTTGTCGTGCTCGTGCTCGTCGTGACGTGCTTCGATGTAACTAACGTGGATGCTGGGAAAGGCACCTCACATTCACTCCCAATAACTCCCGCAACTCCCCC]




>consensus_6704#2
CCGGCGGAACGTGCGTCTCTGTGACTCCTCCCCCGCACCCCATGGTTGTGTGAAAACGGA
CCAAAAGAAAAAGAAACGAAGTGGTTACGGGAAAACCGTGAAAAGAAAAAAACAGTTTTT
CGTGTGCCTGCGTGAAAATTCAAGCGTGATTTTTGTGTACCCAGTTTGATAACCTTCTCC
AAAAACTCCGCTCGCGGCGGCCCCCCCTCCGGATGTGCATGTTTGTGAAGCTCCGTGTGT
TTTGTGTTCCTGTTGCGCAGCCGAGTTTCTAGTTCTCGAAGTTTTCTTTGGTTGCTGTTC
GCTGTCGCTACCCTTCCACACCCCCGTTTGGCACAAGTTTTCCGTACGCATGCTGGCCCC
CGTGCGCTATGAGTGAAAGGTGCCGTCGGTTGGCAGGCATTGGCAGCAACAGCGCACCGA
ACGGAGCAACCGAACTGCGAATTGACGGCATTGGCAGGTGGTGGAAACGGTCGAAGCAGC
AGCGGAGAGGCGAGGGAGCTCCACCGTGTAACGACGGGTTCGTGTTGGCATGGTTGTGTA
CCGCGGAACGTAACGCCTTGTGTGTACGGTTGTCGTGCTCGTGCTCGTCGTGACGTGCTT
CGATGTAACTAACGTGGATGCTGGGAAAGGCACCTCACATTCACTCCCAATAACTCCCGC
AACTCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6704#1      CCGATTTTCCACACACAAGAAGACGACTGGCTGGCTCGCAACAGAAGGAAAGCGGAGCGT 60
consensus_6704#2      ------------------------------------------------CCGGCGGAACGT 12
consensus_6704#0      ---ATCGGCACGAGGGGAAAGAGAGAGAGAGAGAGTGAAGAAAAGACCCAGTCAATTCCT 57
                                                                          *    * *

consensus_6704#1      GCGTGTCTGTGACTCCTGCCCCGCAC----CCCATGGCTGTGTGAAAACGGACCAAAAGG 116
consensus_6704#2      GCGTCTCTGTGACTCCTCCCCCGCAC----CCCATGGTTGTGTGAAAACGGACCAAAAGA 68
consensus_6704#0      TAGCCTTTCTCGCCACTAATCCGGTGGGTGCCCAAAGCAAGGAGGTGGCGATTTGGTCGA 117
                        *  * * *  *  **   ***       ****  *    * *    **        * 

consensus_6704#1      AAAAGAAACGAAGTGATTACGGGAAAACCGTGAAAA---AAAAACAGTTTTTCGTGTGCC 173
consensus_6704#2      AAAAGAAACGAAGTGGTTACGGGAAAACCGTGAAAAGAAAAAAACAGTTTTTCGTGTGCC 128
consensus_6704#0      AGCGTAATTGAATTATCTACCCTCCCGTGTAACAGTAACAGAGGGGGCAACCCTTACGAG 177
                      *    **  *** *   ***             *     * *    *     * *  *  

consensus_6704#1      TGCGTGAAAATTCAAGCGTGATTTTTGTGTACCCAGTTTGATAACCTTCTCCAAAAAC-T 232
consensus_6704#2      TGCGTGAAAATTCAAGCGTGATTTTTGTGTACCCAGTTTGATAACCTTCTCCAAAAAC-T 187
consensus_6704#0      TGTGTGGA----CCGGCGGAGAAGACACACACACACACGGGCGATTTTCGGAGAGGACAT 233
                      ** *** *    *  ***            ** **    *   *  ***    *  ** *

consensus_6704#1      CCGCTCGCGGCGGCCTTCTCCCCCCTCCGGATGTGCATGTTTGTGAAGCTCCGTGTGTTT 292
consensus_6704#2      CCGCTCGCGGCGGCC-----CCCCCTCCGGATGTGCATGTTTGTGAAGCTCCGTGTGTTT 242
consensus_6704#0      CCATCCACACAAGTT----CACCAGCATGAAAGCG-ATCGAAGCAAAAATTGTCGTACTT 288
                      **   * *    *        **     * * * * **    *  **  *    **  **

consensus_6704#1      TGTGTTCCTGTTGCGCAGCGGAGTTTCTAGTTCTCGAAGTTTTCTTTGGTTGCTGTTCGC 352
consensus_6704#2      TGTGTTCCTGTTGCGCAGCCGAGTTTCTAGTTCTCGAAGTTTTCTTTGGTTGCTGTTCGC 302
consensus_6704#0      GGATCGCAAGGTGTGGGCAAAACGAGCCTGGTGGTGCGGTATGTCTCGAACG-TGTACAC 347
                       *    *  * ** *      *    *  * *   *  ** *   * *   * *** * *

consensus_6704#1      TGTCGCTACCCTTCCACACCCCCGTTTGGCACAAG-TTTTCCGTACGCATGCTGGCCCCC 411
consensus_6704#2      TGTCGCTACCCTTCCACACCCCCGTTTGGCACAAG-TTTTCCGTACGCATGCTGGCCCCC 361
consensus_6704#0      GAAGGAAATAT-----CGCCCACGATCGGTGCGTCCTTTTTCACCTGCAAGGTCAATCTG 402
                          *  *        * *** ** * **  *    **** *    *** * *    *  

consensus_6704#1      GTGCGCTATGAGTGAAAGGTGCCGTCGGTTGGCAGGCATTGG--CAGCAACAGCGCA--- 466
consensus_6704#2      GTGCGCTATGAGTGAAAGGTGCCGTCGGTTGGCAGGCATTGG--CAGCAACAGCGCA--- 416
consensus_6704#0      GAGGACTTTAAAGTAAAGATGCAG--GTTTGGGATACGGCGGGCCAGGAACGGTTCAAAG 460
                      * *  ** * *   **** *** *  * **** *  *   **  *** *** *  **   

consensus_6704#1      ------CCGAGCGGAGCAACCGAACTGCGAAT-TTACGGCATTGGCAGGTGGTGGAA-AC 518
consensus_6704#2      ------CCGAACGGAGCAACCGAACTGCGAAT-TGACGGCATTGGCAGGTGGTGGAA-AC 468
consensus_6704#0      CGATGGCCCCGCTGTACTATCGCAACGCGAACGCCGCCCTGCTCGTGTTCGATCTCACGC 520
                            **   * *  * * ** *  *****     *     * *     * *   *  *

consensus_6704#1      GGTCCAAGCAGCAGCGGAGAGGCGAGGGCGCTCCACCGT-GTAACGACGGGTGTGGGCAA 577
consensus_6704#2      GGTCGAAGCAGCAGCGGAGAGGCGAGGGAGCTCCACCGT-GTAACGACGGGTTCGTGTTG 527
consensus_6704#0      AGTACAACTCGTTCAACGAAATCAAGGGCTGGGTACAGGAGCTGCAACGGA-ACGTGCAG 579
                       **  **   *        *  * ****      ** *  *   * ****    * *   

consensus_6704#1      AACGAGCCTGGTGGTGCGGTATGTCTCGAAC-GTGT--ACACGAAGGAAATA-TCGCCCA 633
consensus_6704#2      GCATGGTTGTGTACCGCGGAACGTAACGCCTTGTGT--GTACGGTTGTCGTGCTCGTGCT 585
consensus_6704#0      GAACCGA-TGGTACTGTCGCTCGTCGGCAACAAGCTCGACCTGGAAGCGAAACGTGCCGT 638
                           *    **   *  *   **           *      *   *        *    

consensus_6704#1      CGATCGGTGCGTC-CTTTTTCACCTGCAAGGTCAAT-CTGGAGGA--------------- 676
consensus_6704#2      CG-TCGTGACGTG-CTTCGATGTAACTAACGTGGATGCTGGGAAAGGCACCTCACATTCA 643
consensus_6704#0      CTCCCGGGAAGAGGCTATGCTGTACGCGAACTCGAT-CGGGGGCAACTACTTCGAAACGT 697
                      *   **    *   **            *  *  ** * **   *               

consensus_6704#1      --------------------------
consensus_6704#2      CTCCCAATAACTCCCGCAACTCCCCC 669
consensus_6704#0      CCGCCTTAC----------------- 706