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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1879 fasta sequence
[CCGGCTTGAGCCGTGCGGACGCAAATTTTCTCCGTCGATCGCAACACCAGCAACCTGCGCCTGGTAGTCCACCGCAACTGCAGCAGTAGTAGACTACCTGATTGATCGGTGTCTTCAAAGCCATCGATCGGCGAGTGTAAACGGCTTCTGGTCTACGTCTGCCCTGCGCCTGCGTTTTTGAAAACACAAAACTTCCCCACACGCAGCAACCCGCAACGGCCCTGCTAGGATGGATCTTCGAGCGAGCGCAGAGTCGGGCCACAACAACGAGCTGACGATGACGGAGGAGCGCAAGATCACGTCCACCCCGGTGATGGAATTTTATCGCGACAAGTGTGTACTGATCACCGGAGGTACCGGCTTTATCGGGCGCTTGCTGATCGAGAAGCTGCTTAGAATTAACGTCAGACAGATTATTCTACTTTCCCGACCGAAGAAGGGCAAAACAACGCAGCAGCGTTGCGACGATCTGTTCAGCAGCATCGTCTTTATGAACCTGAAGAAAGACTGCCCCACGTTCATCGAGCGTGTCAAGCTGGTCGATGCGGATCTGCAGCACCCGTCCCTCGGCCTCTCGGACGAATCGATCGAGTACATTGTGAACAATGCGCAGATAGTGCTGCACGCCGCCTCGGACGTCCGCTTCGACCAGGCGCTCAAGAAAGCGATCGAGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGATCGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACTGATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGAGGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCCCTGGCCGAATACGTACGTCTACACGAAGGCGCTCACCGAGGACGTGGTACGGCAGTAC-GGCGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGTGATTGCTACCAACGAGGAACCGATCGGTGGCTGGACGGACAACATCTACGGGCTGAACGGTGTGATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCGGACATCATACCGGCGGACATAGTCGTGAATACGGTGCTTGCCGCCGGCTGGCAAACCTACGTAGAACGTTTTATCTATCACCACCTTAGGAAAGGCGACCGTCCGCTGCCGGAGGCGAAGACGAACGGGGAGCTGAAGGGTGTGGCCAAACCGCGCACCAAAATTTACAACTGTGTCACCGGAAACGACAATCCCATCTCGTACCAAAAGATCTACAAGTACTCGATCGAGGTGGGTAAACATTGTCCGCCGAAGAAATCGCTCTGGATCGTGTGCCACAACACGACGACGAACAAGTATTTGTATGAGTTCTACAAAGTGATCTACCATCTGCTGCCCGCACTGTTGATTGACACGTACCTGCGAGTGATCAGACGCACACCGAGAGTTATG-G-AGTTGGAACATGTTTTGAGATGCAATGCATGTAATGTGCTTGTTTCTTATCATTCTAGAGTTATGGACCTTTATCGAAAGGTGCACAAATTCGCCACAGTCATCGAATACTTTGCCAACGGACGATGGACATTCGAGAATGACAATTTGAAATCTCTGAGAGAAAAGTAAGTACTGGACATTGGCTAGACATTCTTCTTCTACAACAGAATGCTCTCTCAAATTCATAGGCTGTCCCCAGACGATCAGATTATGTTCCAGTGCAACATTCAGAAGATTGAGTGGGCCGACTACTTCTGGACGTACATTCATGGGTTGCGCAAGCACATCGCCAACGAGCCGCTGGAGAACCTGGACGAGGCG]
[+] EMBL BM616694 [CCGGCTTGAGCCGTGCGGACGCAAATTTTCTCCGTCGATCGCAACACCAGCAACCTGCGCCTGGTAGTCCACCGCAACTGCAGCAGTAGTAGACTACCTGATTGATCGGTGTCTTCAAAGCCATCGATCGGCGAGTGTAAACGGCTTCTGGTCTACGTCTGCCCTGCGCCTGCGTTTTTGAAAACACAAAACTTCCCCACACGCAGCAACCCGCAACGGCCCTGCTAGGATGGATCTTCGAGCGAGCGCAGAGTCGGGCCACAACAACGAGCTGACGATGACGGAGGAGCGCAAGATCACGTCCACCCCGGTGATGGAATTTTATCGCGACAAGTGTGTACTGATCACCGGAGGTACCGGCTTTATCGGGCGCTTGCTGATCGAGAAGCTGCTTAGAATTAACGTCAGACAGATTATTCTACTTTCCCGACCGAAGAAGGGCAAAACAACGCAGCAGCGTTGCGACGATCTGTTCAGCAGCATCGTCTTTATGAACCTGAAGAAAGACTGCCCCACGTTCATCGAGCGTGTCAAGCTGGTCGATGCGGATCTGCAGCACCCGTCCCTCGGCCTCTCGGACGAATCGATCGAGTACATTGTGAACAATGCGCAGATAGTGCTGCACGCCGCCTCGGACGTCCGCTTCGACCAGGCGCTCAAGAAAGCGATCGAGGTGAACGTGCGCGGCACGCGCGAT ]
[+] EMBL BM581473 [ ccgGGACGCAAATTTTCTCCGTCGATCGCAACACCAGCAACCTGCGCCTGGTAGTCCACCGCAACTGCAGCAGTAGTAGACTACCTGATTGATCGGTGTCTTCAAAGCCATCGATCGGCGAGTGTAAACGGCTTCTGGTCTACGTCTGCCCTGCGCCTGCGTTTTTGAAAACACAAAACTTCCCCACACGCAGCAACCCGCAACGGCCCTGCTAGGATGGATCTTCGAGCGAGCGCAGAGTCGGGCCACAACAACGAGCTGACGATGACGGAGGAGCGCAAGATCACGTCCACCCCGGTGATGGAATTTTATCGCGACAAGTGTGTACTGATCACCGGAGGTACCGGCTTTATCGGGCGCTTGCTGATCGAGAAGCTGCTTAGAATTAACGTCAGACAGATTATTCTACTTTCCCGACCGAAGAAGGGCAAAACAACGCAGCAGCGTTGCGACGATCTGTTCAGCAGCATCGTCTTTATGAACCTGAAGAAAGACTGCCCCACGTTCATCGAGCGTGTCAAGCTGGTCGATGCGGATCTGCAGCACCCGTCCCTCGGCCTCTCGGACGAATCGATCGAGTACATTGTGAACAATGCGCAGATAGTGCTGCACGCCGCCTCGGACGTCCGCTTCGACCAGGCGCTCAAGAAAGCGATCGAGGTGAACGTGCGCGGCACGCGC ]
[+] EMBL BM624295 [ CCGGAAGAAAGACTGCCCCACGTTCATCGAGCGTGTCAAGCTGGTCGATGCGGATCTGCAGCACCCGTCCCTCGGCCTCTCGGACGAATCGATCGAGTACATCGTGAACAATGCGCAGATAGTGCTGCACGCCGCCTCGGACGTCCGCTTCGACCAGGCGCTGAAGAAAGCGATCGAGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGATCGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACTGATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGAGGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCCCTGGCCGAATACGTACGTCTACACGAAGGCGCTCACCGAGGACGTGGTACGGCAGTAC GGCGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGTGATTGCTACCAACGAGGAACCGATCGGTGGCTGGACGGACAACATCTACGGGCTGAACGGTGTGATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCGGACATCAT ]
[+] EMBL BM630634 [ ccgGGTCGAGGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCCCTGGCCGAATACGTACGTCTACACGAAGGCGCTCACCGAGGACGTAGTGCGGCAGTACTGGCGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGTGATTGCTACTAACGAGGAACCGATCGGTGGCTGGACCGACAACATCTACGGGCTGAACGGTGTGATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCGGACATCATACCGGCGGACATAGTCGTGAATACGGTGCTTGCCGCCGGCTGGCAAACCTACGTAGAACGTTTTATCTATCACCACCTTAGGAAAGGCGACCGTCCGCTGCCGGAGGCGAAGACGAACGGGGAGCTGAAGGGTGTGGCCAAACCGCGCACCAAAATTTACAACTGTGTCACCGGAAACGACAATCCCATCTCGTACCAAAAGATCTACAAGTACTCGATCGAGGTGGGTAAACATTGTCCGCCGAAGAAATCGCTCTGGATCGTGTGCCACAACACGACGACGAACAAGTATTTGTATGAGTTCTACAAAGTGATCTACCATCTGCTGCCCGCACTGTTGATTGACACGTACCTGCGAGTGATCAGACGCACACCGAGAGTTATG G A ]
[+] EMBL BX607808 [ CCGACCGCTGCCGGAGGCCAAGTCGAACGGGGAGCTGAAGGGTGTGGCCAAACCGCGCACCAAAATTTACAACTGTGTCACCGGAAACGACAATCCCATCTCGTACCAAAAGATCTACAAGTACTCGATCGAGGTGGGTAAACATTGCCCGCCGAAGAAATCGCTCTGGATCGTGTGTCACAACACGACGACGAACAAGTATTTGTATGAGTTCTACAAAGTGATCTACCATCTGCTGCCTGCACTGTTGATCGACACGTACCTGCGAGTGATCAGACGCACACCGAG G TAGGCGTTGTTGGAACATGTTTTGAGATGCAATGCATGTAATGTGCTTGTTTCTTATCATTCTAGAGTTATGGACCTTTATCGAAAGGTGCACAAATTCGCCACAGTCATCGAATACTTTGCCAACGGACGATGGACATTCGAGAATGACAATTTGAAATCTCTGAGAGAAAAGTAAGTACTGGACATTGGCTAGACATTCTTCTTCTACAACAGAATGCTCTCTCAAATTCATAGGCTGTCCCCAGACGATCAGATTATGTTCCAGTGCAACATTCAGAAGATTGAGTGGGCCGACTACTTCTGGACGTACATTCATGGGTTGCGCAAGCACATCGCCAACGAGCCGCTGGAGAACCTGGACGAGGCG]
consensusID : consensus_6719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CCGGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGATCGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACTGATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGAGGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCCCTGGCCGAACACGTACGTCTACACGAAGGCACTCACCGAGGACGTGGTGCGGCAGTACGGCGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGGTAGGTGTTGGTGTGGGCAACAGGGAGGTTTTTGAGAGAGCAGCACACAACTAAACCTGGCTCTACTCATTCTACAGTGATTGCTACTAACGAGGAACCGATCGGTGGCTGGACCGACAACATCTACGGGCTGAACGGTGTGATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCGGACATCATACCGGCGGACATAGTCGTGAATACGGTGCTGGCCGCCGGCTGGCAAACCTACGTAGAACGGTAAGCTAGAGCTTTTGTTTCCATCCCGCAGCAGGCGGGGGCGCTGTCCAAGCACTGAAGT]
[+] EMBL BM595512 [CCGGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGATCGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACTGATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGAGGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCCCTGGCCGAACACGTACGTCTACACGAAGGCACTCACCGAGGACGTGGTGCGGCAGTACGGCGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGGTAGGTGTTGGTGTGGGCAACAGGGAGGTTTTTGAGAGAGCAGCACACAACTAAACCTGGCTCTACTCATTCTACAGTGATTGCTACTAACGAGGAACCGATCGGTGGCTGGACCGACAACATCTACGGGCTGAACGGTGTGATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCGGACATCATACCGGCGGACATAGTCGTGAATACGGTGCTGGCCGCCGGCTGGCAAACCTACGTAGAACGGTAAGCTAGAGCTTTTGTTTCCATCCCGCAGCAGGCGGGGGCGCTGTCCAAGCACTGAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6719#0 CCGGCTTGAGCCGTGCGGACGCAAATTTTCTCCGTCGATCGCAACACCAGCAACCTGCGC 60
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 CTGGTAGTCCACCGCAACTGCAGCAGTAGTAGACTACCTGATTGATCGGTGTCTTCAAAG 120
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 CCATCGATCGGCGAGTGTAAACGGCTTCTGGTCTACGTCTGCCCTGCGCCTGCGTTTTTG 180
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 AAAACACAAAACTTCCCCACACGCAGCAACCCGCAACGGCCCTGCTAGGATGGATCTTCG 240
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 AGCGAGCGCAGAGTCGGGCCACAACAACGAGCTGACGATGACGGAGGAGCGCAAGATCAC 300
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 GTCCACCCCGGTGATGGAATTTTATCGCGACAAGTGTGTACTGATCACCGGAGGTACCGG 360
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 CTTTATCGGGCGCTTGCTGATCGAGAAGCTGCTTAGAATTAACGTCAGACAGATTATTCT 420
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 ACTTTCCCGACCGAAGAAGGGCAAAACAACGCAGCAGCGTTGCGACGATCTGTTCAGCAG 480
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 CATCGTCTTTATGAACCTGAAGAAAGACTGCCCCACGTTCATCGAGCGTGTCAAGCTGGT 540
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 CGATGCGGATCTGCAGCACCCGTCCCTCGGCCTCTCGGACGAATCGATCGAGTACATTGT 600
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 GAACAATGCGCAGATAGTGCTGCACGCCGCCTCGGACGTCCGCTTCGACCAGGCGCTCAA 660
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 GAAAGCGATCGAGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGAT 720
consensus_6719#1 ---------CCGGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGAT 51
* ************************************************
consensus_6719#0 CGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACT 780
consensus_6719#1 CGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACT 111
************************************************************
consensus_6719#0 GATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGA 840
consensus_6719#1 GATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGA 171
************************************************************
consensus_6719#0 GGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCC 900
consensus_6719#1 GGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCC 231
************************************************************
consensus_6719#0 CTGGCCGAATACGTACGTCTACACGAAGGCGCTCACCGAGGACGTGGTACGGCAGTACGG 960
consensus_6719#1 CTGGCCGAACACGTACGTCTACACGAAGGCACTCACCGAGGACGTGGTGCGGCAGTACGG 291
********* ******************** ***************** ***********
consensus_6719#0 CGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTG---------------------- 998
consensus_6719#1 CGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGGTAGGTGTTGGTGTGGGCAACA 351
**************************************
consensus_6719#0 -------------------------------------------------------TGATT 1003
consensus_6719#1 GGGAGGTTTTTGAGAGAGCAGCACACAACTAAACCTGGCTCTACTCATTCTACAGTGATT 411
*****
consensus_6719#0 GCTACCAACGAGGAACCGATCGGTGGCTGGACGGACAACATCTACGGGCTGAACGGTGTG 1063
consensus_6719#1 GCTACTAACGAGGAACCGATCGGTGGCTGGACCGACAACATCTACGGGCTGAACGGTGTG 471
***** ************************** ***************************
consensus_6719#0 ATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCG 1123
consensus_6719#1 ATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCG 531
************************************************************
consensus_6719#0 GACATCATACCGGCGGACATAGTCGTGAATACGGTGCTTGCCGCCGGCTGGCAAACCTAC 1183
consensus_6719#1 GACATCATACCGGCGGACATAGTCGTGAATACGGTGCTGGCCGCCGGCTGGCAAACCTAC 591
************************************** *********************
consensus_6719#0 GTAGAACGTTTTATCTATCACCACCTTAGGAAAGGCGACCGTCCGCTGCCGGAGGCGAAG 1243
consensus_6719#1 GTAGAACG----GTAAGCTAGAGCTTTTGTTT--CCATCCCGCAGCAGGCGGGGGCGCTG 645
******** * * * ** * * ** * ** * *** **** *
consensus_6719#0 ACGAACGGGGAGCTGAAGGGTGTGGCCAAACCGCGCACCAAAATTTACAACTGTGTCACC 1303
consensus_6719#1 TCCAA----GCACTGAAGT----------------------------------------- 660
* ** * ******
consensus_6719#0 GGAAACGACAATCCCATCTCGTACCAAAAGATCTACAAGTACTCGATCGAGGTGGGTAAA 1363
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 CATTGTCCGCCGAAGAAATCGCTCTGGATCGTGTGCCACAACACGACGACGAACAAGTAT 1423
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 TTGTATGAGTTCTACAAAGTGATCTACCATCTGCTGCCCGCACTGTTGATTGACACGTAC 1483
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 CTGCGAGTGATCAGACGCACACCGAGAGTTATGGAGTTGGAACATGTTTTGAGATGCAAT 1543
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 GCATGTAATGTGCTTGTTTCTTATCATTCTAGAGTTATGGACCTTTATCGAAAGGTGCAC 1603
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 AAATTCGCCACAGTCATCGAATACTTTGCCAACGGACGATGGACATTCGAGAATGACAAT 1663
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 TTGAAATCTCTGAGAGAAAAGTAAGTACTGGACATTGGCTAGACATTCTTCTTCTACAAC 1723
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 AGAATGCTCTCTCAAATTCATAGGCTGTCCCCAGACGATCAGATTATGTTCCAGTGCAAC 1783
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 ATTCAGAAGATTGAGTGGGCCGACTACTTCTGGACGTACATTCATGGGTTGCGCAAGCAC 1843
consensus_6719#1 ------------------------------------------------------------
consensus_6719#0 ATCGCCAACGAGCCGCTGGAGAACCTGGACGAGGCG 1879
consensus_6719#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||