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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1314 fasta sequence
[CCGCGCCTGCTGCAGGACCACATCGATGAGATAGGCGCGACGGGTGGTATACCGTTCTACATTCTGAAGCCGGTGCTGGAACGGGCCAATCCGACTCAGCTGCTCCATCTGGAACACTTCAATCCGCACTTTGTCGAGGACAGTGATGTTCTGTGGGAGCAGCACTGTAAACGTACCTTCCGTTCGAAGCAGCGCAACGAAGAGGAGCTGGAAACGTGGCGAGAAATGTTCCTGCGCTGCTCCGAGGAGCGGGATGCGAAGCTGAGGAGCCTCACGCAGAATATTAAGCTGTCGCAGGAACAGGCGGCGGCTCCAATACGTAAAACGCAGCTAGCGTACGTCGACTCCGCCGTAAAGCCACCGCGCAGTGTAATAAGCAAGCAGGTCAAATACGGCACGGCTCGTGCGCCGGTCGTTTCACCCGCGGCACGTGTAGCTGCATTGAAGGCAGGCAATGTGGCCCAGGCCGGTGACGCGCGGTTACGAGTAGCGGCTGGTGTGCGCGATAATGCTCAAGCGCAAGTTTTTCAGCCCACCAAACCACGCAAAGCTCC-AATGATGGCAAAAGTATTGTCCTCCATGAAGGGTTTCAAAACCAGCTTCCGGCGTTAGGATACCTGGACTATTACTCCCCCAAAGAGTGTCGACTGTAGCGGGAGCACTGTTCAAGAAGGACTGCTCGATTTGGTACAACACGGCGCCCTCCGGAGATGCAACCAATGGCTCTAGGTTGTGGCGTTCAATAACACACGAAACAACGCATTACACTCATCTAGTTTACTCCTTCTTAAATCACTTTTTGAACGCGGTGTTAGTTTTTTTTTTAAAGTGTTTTCTAAATTACGTTTTACATCGTCACTCAAACGCCTTATTTATGCTATGTCTCTTTAATATCATCTTTTACAAATCGATATGTGCATGTCTACGCTGAGTTAAATGCAGGTTATATAGTGCAGTTGGTAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTACCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCCCTGCACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCATTGATTGTGTGTGTGTGTGAGCGTGTGTTCGATTTTATTTTTCTTTCTTCCCTCTTAGTGTTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTACAGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTG]
[+] EMBL BM649376 [CCGCGCCTGCTGCAGGACCACATCGATGAGATAGGCGCGACGGGTGGTATACCGTTCTACATTCTGAAGCCGGTGCTGGAACGGGCCAATCCGACTCAGCTGCTCCATCTGGAACACTTCAATCCGCACTTTGTCGAGGACAGTGATGTTCTGTGGGAGCAGCACTGTAAACGTACCTTCCGTTCGAAGCAGCGCAACGAAGAGGAGCTGGAAACGTGGCGAGAAATGTTCCTGCGCTGCTCCGAGGAGCGGGATGCGAAGCTGAGGAGCCTCACGCAGAATATTAAGCTGTCGCAGGAACAGGCGGCGGCTCCAATACGTAAAACGCAGCTAGCGTACGTCGACTCCGCCGTAAAGCCACCGCGCAGTGTAATAAGCAAGCAGGTCAAATACGGCACGGCTCGTGCGCCGGTCGTTTCACCCGCGGCACGTGTAGCTGCATTGAAGGCAGGCAATGTGGCCCAGGCCGGTGACGCGCGGTTACGAGTAGCGGCTGGTGTGCGCGATAATGCTCAAGCGCAAGTTTTTCAGCCCACCAAACCACGCAA ]
[+] EMBL BX619266 [ GCAGCACTGTAAACGTACCTTCCGTTCGAAGCAGCGCAACGAAGAGGAGCTGGAAACGTGGCGAGAAATGTTCCTGCGCTGCTCCGAGGAGCGGGATGCGAAGCTGAGGAGCCTCACGCAGAATATTAAGCTGTCGCAGGAACAGGCGGCGGCTCCAATACGTAAAACGCAGCTAGCGTACGTCGACTCCGCCGTAAAGCCACCGCGCAGTGTAATAAGCAAGCAGGTCAAATACGGCACGGCTCGTGCGCCGGTCGTTTCACCCGCGGCACGTGTAGCTGCACTGAAGGCAGGCAATGTGGCCCAGGCCGGTGACGCGCGGTTACGAGTAGCGGCTGGTGTGCGCGATAATGCTCNAGCGCAAGTTTTTCAGCCCACCAAACCACGCNAAGCTCCAAATGATGGCAAAAGTATTGTCCTCCATGAGGGGTTNCAAAACCAGCTTCCGGCGTTANGATACCTGGACTATTACTCCCCCAAAGAGTGT ]
[+] EMBL BX621042 [ GCGGTTACGAGTAGCGGNTGGTGTGCGCGATAATGCTCAAGCGCAAGTTTTTCAGCCCACCAAACCACGCAAAGCTCC AATGATGGCAAAAGTATTGTCCTCCATGAAGGGTTTCAAAACCAGCTTCCGGCGTTAGGATACCTGGACTATTACTCCCCCAAAGAGTGTCGACTGTAGCGGGAGCACTGTTCAAGAAGGACTGCTCGATTTGGTACAACACGGCGCCCTCCGGAGATGCAACCAATGGCTCTAGGTTGTGGCGTTCAATAACACACGAAACAACGCATTACACTCATCTAGTTTACTCCTTCTTAAATCACTTTTTGAACGCGGTGTTAGTTTTTTTTTTAAAGTGTTTTCTAAATTACGTTTTACATCGTCACTCAAACGCCTTATTTATGCTATGTCTCTTTAATATCATCTTTTACAAATCGATATGTGCATGTCTACGCTGAGTTAAATGCAGGTTATATAGTGCAGTTGGTAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTACCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCCCTGCACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCAT ]
[+] EMBL BX608452 [ AAACCACGCAAAGCTCC AATGATGGCAAAAGTATTGTCCTCCATGAAGGGTTTCAAAACCAGCTTCCGGCGTTAGGATACCTGGACTATTACTCCCCCAAAGAGTGTCGACTGTAGCGGGAGCACTGTTCAAGAAGGACTGCTCGATTTGGTACAACACGGCGCCCTCCGGAGATGCAACCAATGGCTCTAGGTTGTGGCGTTCAATAACACACGAAACAACGCATTACACTCATCTAGTTTACTCCTTCTTAAATCACTTTTTGAACGCGGTGTTAGTTTTTTTTTTAAAGTGTTTTCTAAATTACGTTTTACATCGTCACTCAAACGCCTTA TTATGCTATGTCTCTTTAATATCATCTTTTACAAATCGATATGTGCATGTCTACGCTGAGTTAAATGCAGGTTATATAGTGCAGTTGGTAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTACCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCCCTGCACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCATTGATTGTGTGTGTGTGTGAGCGTGTGTTCGATTTTATTTTTCTTTCTTCCCTCTTAGTGTTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTACAGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTG]
consensusID : consensus_6733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 420 fasta sequence
[CCGCCCACGCGTCCGCCACGCGTCCGGTAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTTCCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCTACACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCATTGATTGTGTGTGTGTGAGCGTGTGTTTGATTTTATTTTTCTTTCTTCCCTCTTAATGTTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTACAGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTGCCTATTATACTATGTACGTAAAATACATATTATTTGAAATTTT]
[+] EMBL BM606747 [CCGCCCACGCGTCCGCCACGCGTCCGGTAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTTCCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCTACACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCATTGATTGTGTGTGTGTGAGCGTGTGTTTGATTTTATTTTTCTTTCTTCCCTCTTAATGTTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTACAGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTGCCTATTATACTATGTACGTAAAATACATATTATTTGAAATTTT]
[+] EMBL BM646916 [ AAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTTCCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCTACACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGGAACTGAGTTTATCATGTCATTGATTGTGTGTGTGTGAGCGTGTGTTTGATTTTATTTTTCTTTCTTCCCTCTTAATGTTCTGATCGATGCAGTGTGGTTTGCGGATATACATATTAAAAGTATAGGACACAGTTTACAGCGGAGGGCGTGTAATGAGCGGATCGTTTATGTTTGTTATATCCAATCGTTTGCCTATTAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6733#0 CCGCGCCTGCTGCAGGACCACATCGATGAGATAGGCGCGACGGGTGGTATACCGTTCTAC 60
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 ATTCTGAAGCCGGTGCTGGAACGGGCCAATCCGACTCAGCTGCTCCATCTGGAACACTTC 120
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 AATCCGCACTTTGTCGAGGACAGTGATGTTCTGTGGGAGCAGCACTGTAAACGTACCTTC 180
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 CGTTCGAAGCAGCGCAACGAAGAGGAGCTGGAAACGTGGCGAGAAATGTTCCTGCGCTGC 240
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 TCCGAGGAGCGGGATGCGAAGCTGAGGAGCCTCACGCAGAATATTAAGCTGTCGCAGGAA 300
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 CAGGCGGCGGCTCCAATACGTAAAACGCAGCTAGCGTACGTCGACTCCGCCGTAAAGCCA 360
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 CCGCGCAGTGTAATAAGCAAGCAGGTCAAATACGGCACGGCTCGTGCGCCGGTCGTTTCA 420
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 CCCGCGGCACGTGTAGCTGCATTGAAGGCAGGCAATGTGGCCCAGGCCGGTGACGCGCGG 480
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 TTACGAGTAGCGGCTGGTGTGCGCGATAATGCTCAAGCGCAAGTTTTTCAGCCCACCAAA 540
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 CCACGCAAAGCTCCAATGATGGCAAAAGTATTGTCCTCCATGAAGGGTTTCAAAACCAGC 600
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 TTCCGGCGTTAGGATACCTGGACTATTACTCCCCCAAAGAGTGTCGACTGTAGCGGGAGC 660
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 ACTGTTCAAGAAGGACTGCTCGATTTGGTACAACACGGCGCCCTCCGGAGATGCAACCAA 720
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 TGGCTCTAGGTTGTGGCGTTCAATAACACACGAAACAACGCATTACACTCATCTAGTTTA 780
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 CTCCTTCTTAAATCACTTTTTGAACGCGGTGTTAGTTTTTTTTTTAAAGTGTTTTCTAAA 840
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 TTACGTTTTACATCGTCACTCAAACGCCTTATTTATGCTATGTCTCTTTAATATCATCTT 900
consensus_6733#1 ------------------------------------------------------------
consensus_6733#0 TTACAAATCGATATGTGCATGTCTACGCTGAGTTAAATGCAGGTTATATAGTGCAGTTGG 960
consensus_6733#1 --------------------------------CCGCCCACGCGTC-CGCCACGCGTCCGG 27
* ** ** **
consensus_6733#0 TAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTACCGAAC 1020
consensus_6733#1 TAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTTCCGAAC 87
***************************************************** ******
consensus_6733#0 GGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCCCTGCACAGAACAAGTCCAGCG 1080
consensus_6733#1 GGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACC--TACACAGAACAAGTCCAGCG 145
************************************** * ******************
consensus_6733#0 CCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCA 1140
consensus_6733#1 CCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCA 205
************************************************************
consensus_6733#0 TTGATTGTGTGTGTGTGTGAGCGTGTGTTCGATTTTATTTTTCTTTCTTCCCTCTTAGTG 1200
consensus_6733#1 TTGATTGTGTGTGTGTG--AGCGTGTGTTTGATTTTATTTTTCTTTCTTCCCTCTTAATG 263
***************** ********** *************************** **
consensus_6733#0 TTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTAC 1260
consensus_6733#1 TTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTAC 323
************************************************************
consensus_6733#0 AGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTG------ 1314
consensus_6733#1 AGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTGCCTATT 383
******************************************************
consensus_6733#0 -------------------------------------
consensus_6733#1 ATACTATGTACGTAAAATACATATTATTTGAAATTTT 420
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||