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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6738#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 880 fasta sequence
[AGATCGCCCCGAGGNCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTGCAACGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCGCAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGCCAACGATGGCGGACAAGGATGCTACTGCTGCCAAGGACGACGAGCACGACAACGACGAAGACAACGGTGGCGGCTGGAGAACGGTTAAAAAGGCGCGCAAAACATTCACCGATAATAACGATTGGTAGCGAAGGAAAGGGCGCAAACGTGTAGGTGAGTGCTGTTTTTAGATAAGCGACCTGCAAAAAAAAAACGCGCATAAGGAGAATCGTCTCTGGTGCGCCGCACTGTAGTAACCGCACATTTCAGGACAGACCGTCGTGTGCGGCATCTTTCTCTTTCTCTCTCCTGGNCTCTCTGGAGAGCTGCTGTATACGTGCAAAGGCACCACACACTTGTCGGTAGTGTGTATGAAATGTACAAAAAGAAGAAGAAGAAAAAAATAACAAAATTCTGTT]
[+] EMBL AL693430 [AGATCGCCCCGAGGNCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTGCAACGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAA ]
[+] EMBL BX621618 [ ACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTGCAACGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCGCAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGCCAACGATGGCGGACAAGGATGCTACTGCTGCCAAGGACGACGAGCACGACAACGACGAAGACAACGGTGGCGGCTGGAGAACGGTTAAAAAGGCGCGCAAAACATTCACCGATAATAACGATTGGTAGCGAAGGAAAGGGCGCAAACGTGTAGGTGAGTGCTGTTTTTAGATAAGCGACCTGCAAAAAAAAAACGCGCATAAGGAGAATCGTCTCTGGTGCGCCGCACTGTAGTAACCGCACATTTCAGGACAGACCGTCGTGTGCGGCATCTTTCTCTTTCTCTCTCCTGGNCTCTCTGGAGAGCTGCTGTATACGTGCAAAG ]
[+] EMBL BX608205 [ CAGTCAATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGTGTCCGCAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGTAACGCCGCCAACGATGGCGGACAAGGATGCTACTGCTGCCAAGGACGACGAGCACGACAACGACGAAGACAACGGTGGCGGCTGGAGAACGGTTAAAAAGGCGCGCAAAACATTCACCGATAATAACGATTGGTAGCGAAGGAAAGGGCGCAAACGTGTAGGTGAGTGCTGTTTTTAGATAAGCGACTTGC AAAAAAAAACGCGCATAAGGAGAATCGTCTCTGGTGCGCCGCACTGTAGTAACCGCACATTTCATGACAGACCGTCGTGTGCGGCATCTTTCTCTTTCTCTCTCCTGGTCTCTCTGGAGAGCTGCTGTATACGTGCAAAGGCACCACACACTTGTCGGTAGTGTGTATGAAATGTACAAAAAGAAGAAGAAGAAAAAAATAACAAAATTCTGTT]
consensusID : consensus_6738#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence
[GCAAGAATCGCGCACGAGGAGCGTGGATGACGAGAAAAAGCACGAAGCAGGCTACGATGCTTACCTTACGGGGTTATGTTTCTTGGGACTGGTTAGCAAATTCAAAGCTAATCTACTGCAACTTCCCAAAGATCCCAACTTGAAACACTATCTAAACAGAATTTTCATCACCCGCCTAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTCGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCGCAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGCAACGATGGCGGACAAGGATGCTACTGNTGCAAGGACGACGGAGCACGACAACGACGAAAGACAACGGTGGCGGCT]
[+] EMBL BX467427 [GCAAGAATCGCGCACGAGGAGCGTGGATGACGAGAAAAAGCACGAAGCAGGCTACGATGCTTACCTTACGGGGTTATGTTTCTTGGGACTGGTTAGCAAATTCAAAGCTAATCTACTGCAACTTCCCAAAGATCCCAACTTGAAACACTATCTAAACAGAATTTTCATCACCCGCCTAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTCGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCGCAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGCAACGATGGCGGACAAGGATGCTACTGNTGCAAGGACGACGGAGCACGACAACGACGAAAGACAACGGTGGCGGCT]
consensusID : consensus_6738#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence
[GATGGCCCCGGGTTTAGCTGGTGCTGCAGGAGCTGNCAAGGCACGGAAACTAATCATTGGCCACAATATGCTGCTGGATTTGTTCTACGTGCTGCGCCAATTCTTTAAACCACTGCCGGCGGACTATCAAGAGTTTAAGAAGCTGACGAAGGAATATTTCCCACTCCTTCTAGATACCAAGTATCTGTGCACGAATGCGGAGATTAAAGTGAATGTCAACTCCTCCGGTACTAGCACACGTGTACGATGCGGTAAGCAAGGCACCATTCTCGATCCCTACGGTGCATCCCGAGCTGCCGGATTATCAGTACAGCGTGGNTGACGAGAAAAAGCCACGAAGCAGGCTACGATGCTTACCTTACGGGGTTATGTATCTTGGGACTGGTTTAGCAAATTCAAAAGCTAATCTACTGCAACTTCCCCAAAGATCCCAAGTTGAAACACTATCTAAACCAGAATTTTCATCACCGCTAAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAA]
[+] EMBL AL694237 [GATGGCCCCGGGTTTAGCTGGTGCTGCAGGAGCTGNCAAGGCACGGAAACTAATCATTGGCCACAATATGCTGCTGGATTTGTTCTACGTGCTGCGCCAATTCTTTAAACCACTGCCGGCGGACTATCAAGAGTTTAAGAAGCTGACGAAGGAATATTTCCCACTCCTTCTAGATACCAAGTATCTGTGCACGAATGCGGAGATTAAAGTGAATGTCAACTCCTCCGGTACTAGCACACGTGTACGATGCGGTAAGCAAGGCACCATTCTCGATCCCTACGGTGCATCCCGAGCTGCCGGATTATCAGTACAGCGTGGNTGACGAGAAAAAGCCACGAAGCAGGCTACGATGCTTACCTTACGGGGTTATGTATCTTGGGACTGGTTTAGCAAATTCAAAAGCTAATCTACTGCAACTTCCCCAAAGATCCCAAGTTGAAACACTATCTAAACCAGAATTTTCATCACCGCTAAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAA]
consensusID : consensus_6738#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence
[CCCCGAGNTTAATTTCATCACCCGCCTAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTCGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAA]
[+] EMBL AL694326 [CCCCGAGNTTAATTTCATCACCCGCCTAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTCGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6738#0 ------------------------------------------------------------
consensus_6738#3 ------------------------------------------------------------
consensus_6738#1 GCAAGAATCGCGCACGAGGAGCGTGGATGACGAGAAAAAGCACGAAGCAGGCTACGATGC 60
consensus_6738#2 ------------------------------------------------------------
consensus_6738#0 ------------------------------------------------------------
consensus_6738#3 ------------------------------------------------------------
consensus_6738#1 TTACCTTACGGGGTTATGTTTCTTGGGACTGGTTAGCAAATTCAAAGCTAATCTACTGCA 120
consensus_6738#2 ------------------------------------------------------------
consensus_6738#0 --------------------------------------------AGATCGCCC-CGAGGN 15
consensus_6738#3 ------------------------------CCCCGAGNTTAATTTCATCACCCGCCTAAC 30
consensus_6738#1 ACTTCCCAAAGATCCCAACTTGAAACACTATCTAAACAGAATTTTCATCACCCGCCTAAC 180
consensus_6738#2 ---------------------------------------------GATGGCCC-CGGGTT 14
** *** *
consensus_6738#0 CGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTT 75
consensus_6738#3 CGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTT 90
consensus_6738#1 CGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTT 240
consensus_6738#2 TAGCTGGTGCTGCAGGAGCTGNCAAGGCACGGAAACTAATCATTGGCCACAATATG-CTG 73
* * ** * * ** * *** * * ** ** ** ** **
consensus_6738#0 CTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTT 135
consensus_6738#3 CTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTT 150
consensus_6738#1 CTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTT 300
consensus_6738#2 CTG-GATTTGTTCT-----ACGTGCTGCGCCA---ATTCTTTAAACCACTGCCGGCGGAC 124
** * **** ** ** ** ** * *** * * * * *
consensus_6738#0 CGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCG 195
consensus_6738#3 CGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCG 210
consensus_6738#1 CGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCG 360
consensus_6738#2 TATCAAGAGTTTAAGAAGCTGACGAAGGAATATTTCCCACTCCTTCTAGATACCAAGTAT 184
* ***** * **** *** * * * * *
consensus_6738#0 TAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAA 255
consensus_6738#3 TAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAA 270
consensus_6738#1 TAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAA 420
consensus_6738#2 CTGTGC-ACGAATGCGGAGATTAAAGTGAATGTCAACTCCTCCGGTACTA----GCACA- 238
**** *** *** * * *** *** * * * ****** * * ***
consensus_6738#0 CTTTGCACAATTTACGCAAATGAAACTGCAACGCCCTGGAGCTAAACGAGGA---CGAAA 312
consensus_6738#3 CTTTGCACAATTTACGCAAATGAAACT----CGCCCTGGAGCTAAACGAGGA---CGAAA 323
consensus_6738#1 CTTTGCACAATTTACGCAAATGAAACT----CGCCCTGGAGCTAAACGAGGA---CGAAA 473
consensus_6738#2 -CGTGTACGATGCG-GTAAGCAAGGCAC---CATTCTCGATCCCTACGGTGCATCCCGAG 293
** ** ** * ** * * * ** ** * *** * * *
consensus_6738#0 CGGTTCGAGTAGTGCTG--GCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTC 370
consensus_6738#3 CGGTTCGAGTAGTGCTG--GCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTC 381
consensus_6738#1 CGGTTCGAGTAGTGCTG--GCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTC 531
consensus_6738#2 CTGCCGGATTATCAGTACAGCGTGGNTGACGAGAAAAAGCCACGAAGCAGGCTACGATGC 353
* * ** ** * ** * ** ** * ****** * ** * *
consensus_6738#0 AATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCG 430
consensus_6738#3 AATCAACGGCCGAGCGGGGAA--------------------------------------- 402
consensus_6738#1 AATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCG 591
consensus_6738#2 TTACCTTACGGGGTTATGTATCTTGGGACTGGTTTAGCAAATTCAAAAGCTAATCTACTG 413
* * * *
consensus_6738#0 CAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGCCAACGATG 490
consensus_6738#3 ------------------------------------------------------------
consensus_6738#1 CAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGC-AACGATG 650
consensus_6738#2 CAACT--TCCCCAAAGATCCCAAGTTGAAACAC-TATCTAAACCAGAATTTTCATCACCG 470
consensus_6738#0 GCGGACAAGGATG--CTACTGCTGCCAAGGACGACGAGCACGACAACGACGAA-GACAAC 547
consensus_6738#3 ------------------------------------------------------------
consensus_6738#1 GCGGACAAGGATG--CTACTGNTGCAAGGACGACGGAGCACGACAACGACGAAAGACAAC 708
consensus_6738#2 CTAAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAA---------- 520
consensus_6738#0 GGTGGCGGCTGGAGAACGGTTAAAAAGGCGCGCAAAACATTCACCGATAATAACGATTGG 607
consensus_6738#3 ------------------------------------------------------------
consensus_6738#1 GGTGGCGGCT-------------------------------------------------- 718
consensus_6738#2 ------------------------------------------------------------
consensus_6738#0 TAGCGAAGGAAAGGGCGCAAACGTGTAGGTGAGTGCTGTTTTTAGATAAGCGACCTGCAA 667
consensus_6738#3 ------------------------------------------------------------
consensus_6738#1 ------------------------------------------------------------
consensus_6738#2 ------------------------------------------------------------
consensus_6738#0 AAAAAAAACGCGCATAAGGAGAATCGTCTCTGGTGCGCCGCACTGTAGTAACCGCACATT 727
consensus_6738#3 ------------------------------------------------------------
consensus_6738#1 ------------------------------------------------------------
consensus_6738#2 ------------------------------------------------------------
consensus_6738#0 TCAGGACAGACCGTCGTGTGCGGCATCTTTCTCTTTCTCTCTCCTGGNCTCTCTGGAGAG 787
consensus_6738#3 ------------------------------------------------------------
consensus_6738#1 ------------------------------------------------------------
consensus_6738#2 ------------------------------------------------------------
consensus_6738#0 CTGCTGTATACGTGCAAAGGCACCACACACTTGTCGGTAGTGTGTATGAAATGTACAAAA 847
consensus_6738#3 ------------------------------------------------------------
consensus_6738#1 ------------------------------------------------------------
consensus_6738#2 ------------------------------------------------------------
consensus_6738#0 AGAAGAAGAAGAAAAAAATAACAAAATTCTGTT 880
consensus_6738#3 ---------------------------------
consensus_6738#1 ---------------------------------
consensus_6738#2 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||