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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 881 fasta sequence
[CCGCGCCGCTCCCGAACGCAAGTCGCGTAATTCTGTCCGGCTGTCCCTGTTCGTGCGGGGCGTGCAAAAAAGGGCTTTGCCATCGAAGGAACGTCCCTCGGTAAGCAGCTGTGCGGTTCCGAGCCGGATGCAGCAAGCGAAATTCCGTGCGCTTTGACAACGTTAAAATTTCACCTTTCACTTGCTTCTGTCATCCAAGGGGGAGAGCAACGTGACGAACAAACACCGCAAGGCACCTGAGTGAGTGAGTGAGCGATGGCCGGAATACTTTCGATATCGTCGCGAAATTTGCCCCGCGCAGCCCTCCGTCTCGGTCTGCGTTCATTGGAAGGCCAATCAGGACCCCAGCAGGGCACTGTAACCGGTTCGCGATCCTACCACCAGGGGCGTCGATTGTTGCCGAGCGTCGCCGTCCGGTCCGCGGTCACCGACAGTGGCAGACGTTGCGAATCCGTTCGAAACTCTATCAAGGCACAGGGATGGGCTGTGAACGAGCGGGCCATCTTCACCTCGGCCCGCATGCTGTCGTCGGAAATCGTGAAGGTGCCTCCGTTTGCCGATTCCGTGTCCGAGGGCGATGTGAAGTTTGAGAAGAAAGTCGGCGATGCGGTGGCCGCCGACGAGGTGGTGATGGAGATTGAAACCGACAAGACTACCGTCGGTGTCCCGGCCCCGGGTCATGGTATTATCGAGGAGATCTACGTCGCGGACGCCACCACCGTGCTGTCGCGTGCCATCGCCGAGCTGGGCATCTACCCGGCGGTCGATCCGCTCGATTCGACCTCGCGTATCATGGACCCGAACATCATCGGCGCCGAGCACTACAACATCGCCCGTGGCGTGCAGAAGATCCTGCAGGACTACAAGTCGCTCCAGGACAT]
[+] EMBL BM620431 [CCGCGCCGCTCCCGAACGCAAGTCGCGTAATTCTGTCCGGCTGTCCCTGTTCGTGCGGGGCGTGCAAAAAAGGGCTTTGCCATCGAAGGAACGTCCCTCGGTAAGCAGCTGTGCGGTTCCGAGCCGGATGCAGCAAGCGAAATTCCGTGCGCTTTGACAACGTTAAAATTTCACCTTTCACTTGCTTCTGTCATCCAAGGGGGAGAGCAACGTGACGAACAAACACCGCAAGGCACCTGAGTGAGTGAGTGAGCGATGGCCGGAATACTTTCGATATCGTCGCGAAATTTGCCCCGCGCAGCCCTCCGTCTCGGTCTGCGTTCATTGGAAGGCCAATCAGGACCCCAGCAGGGCACTGTAACCGGTTCGCGATCCTACCACCAGGGGCGTCGATTGTTGCCGAGCGTCGCCGTCCGGTCCGCGGTCACCGACAGTGGCAGACGTTGCGAATCCGTTCGAAACTCTATCAAGGCACAGGGATGGGCTGTGAACGAGCGGGCCATCTTCACCTCGGCCCGCATGCTGTCGTCGGAAATCGTGAAGGTGCCTCCGTTTGCCGATTCCGTGTCCGAGGGCGATGTGAAGTTTGAGAAGAAAGTCGGCGATGCGGTGGCCGCCGACGAGGTGGTGATGGAGATTGAAACCGACAAGACTACCGTCGGTGTCCCGGCCCCGG ]
[+] EMBL BM587821 [ ccGAACGTCCCTCGGTAAGCAGCTGTGCGGTTCCGAGCCGGATGCAGCAAGCGAAATTCCGTGCGCTTTGACAACGTTAAAATTTCACCTTTCACTTGCTTCTGTCATCCAAGGGGGAGAGCAACGTGACGAACAAACACCGCAAGGCACCTGAGTGAGTGAGTGAGCGATGGCCGGAATACTTTCGATATCGTCGCGAAATTTGCCCCGCGCAGCCCTCCGTCTCGGTCTGCGTTCATTGGAAGGCCAATCAGGACCCCAGCAGGGCACTGTAACCGGTTCGCGATCCTACCACCAGGGGCGTCGATTGTTGCCGAGCGTCGCCGTCCGGTCCGCGGTCACCGACAGTGGCAGACGTTGCGAATCCGTTCGAAACTCTATCAAGGCACAGGGATGGGCTGTGAACGAGCGGGCCATCTTCACCTCGGCCCGCATGCTGTCGTCGGAAATCGTGAAGGTGCCTCCGTTTGCCGATTCCGTGTCCGAGGGCGATGTGAAGTTTGAGAAGAAAGTCGGCGATGCGGTGGCCGCCG ]
[+] EMBL CNS09CHZ [ gaCGATGG CGGAATACTTTCGATATCGTCGCGAAATTTGCCCCGCGCAG CCTCCGTCTCGGTCTGCGTTCATTGGAAGGCCAATCAGCACCCCAGCAGGGCACTGTAACCGGTTCGCGATCCTACCACCAGGGGCGTCGATTGTTGCCGAGCGTCGCCGTCCGGTCCGCGGTCACCGACAGTGGCAGACGTTGCGAATCCGTTCGAAACTCTATCAAGGCACAGGGATGGGCTGTGAACGAGCGGGCCATCTTCACCTCGGCCCGCATGCTGTCGTCGGAAATCGTGAAGGTGCCTCCGTTTGCCGATTCCGTGTCCGAGGGCGATGTGAAGTTTGAGAAGAAAGTCGGCGATGCGGTGGCCGCCGACGAGGTGGTGATGGAGATTGAGACCGACAAGACTACCGTCGGTGTCCCGGCCCCGGGTCATGGTATTATCGAGGAGATCTACGTCGCGGACGCCACCACCGTGCTGTCGCGTGCCATCGCCGAGCTGGGCATCTACCCGGCGGTCGATCCGCTCGATTCGACCTCGCGTATCATGGACCCGAACATCATCGGCGCCGAGCACTACAACATCGCCCGTGGCGTGCAGAAGATCCTGCAGGACTACAAGTCGCTCCAGGACAT]
consensusID : consensus_6740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 849 fasta sequence
[CCGCCCACGCGTCCGAACGAGGCTCCGCAAGAAGAATCGGCAGCACCATTGGAAGACACCGAATTACCGGAACAGTCGGAAACAACCGTACCGACGGAAGAATCTGCACCGTCAACATCGGTCCCAGAAGCAGAGACAACGGCGCAATCAACCAATGCGGAAGAGGAACAGTCCCCCGCCGAAACGGAATTGCCGGAAGAAAACAATTCGCCGGCAGTAGAAGAATCAACCACCTTAGCGCCACCATCGGAAGGCGTATCCGGACAGGAATCAGTTGCAACGGAAGCAGCCGAGGTAGAAGCTAGCGAAAACACAGAATCGGCTGTAGCGACGGAACAGACGGAAGCATCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAACAATCATCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAATCGACGGAGGGCGTAGCTGCTGAGACCGAAGTCTCGCAGGACGCTTCTACAGCCGGAGTTCCAGAAGCACCAGAGCAGGTAGAAGAGGAAACGGGTTCCGAAACGGTACCATCAGAGCCTGAGGTGGAAGCTGAAGTTGAGGAAGTAACCTCGGAAGCATCCGTGGAACCTGAAGCTTCGGAACCGACACCAGCATCGCCTGTGGAGACTGAGGCTCCGGAAGCTAGCTCCGAACCATCGGTAGAGCCCGAAGCGTCTGAGCCCACTTCTCAACCGGCTGAGGAATCGGAGACTCCTGAATCCCCCGTCGTACCATCGGAGGAACCAGAGGCTGCTGAACCCACCGGCACCGAGGCACCAGAGACTCCTGAAGCCTCCAGCGCACCCGAAACAACTGCAGCT]
[+] EMBL BM589066 [CCGCCCACGCGTCCGAACGAGGCTCCGCAAGAAGAATCGGCAGCACCATTGGAAGACACCGAATTACCGGAACAGTCGGAAACAACCGTACCGACGGAAGAATCTGCACCGTCAACATCGGTCCCAGAAGCAGAGACAACGGCGCAATCAACCAATGCGGAAGAGGAACAGTCCCCCGCCGAAACGGAATTGCCGGAAGAAAACAATTCGCCGGCAGTAGAAGAATCAACCACCTTAGCGCCACCATCGGAAGGCGTATCCGGACAGGAATCAGTTGCAACGGAAGCAGCCGAGGTAGAAGCTAGCGAAAACACAGAATCGGCTGTAGCGACGGAACAGACGGAAGCATCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAACAATCATCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAATCGACGGAGGGCGTAGCTGCTGAGACCGAAGTCTCGC ]
[+] EMBL BM606618 [ ccgGAGGAACAGTCCCCCGCCGAAACGGAATTGCCGGAAGAGAACAATTCGCCGGCAGAAGAAGAATCTACCACCTTAGCGCCACCATCGGAAGGCGTATCCGGACAGGAATCAGTTGCAACGGAAGCAGCCGAGGTAGAAGACAGCGAAAACACGGAATCGGCTGTAGCGACGGAACAGACGGAAGCTTCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAACAATCGTCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAATCGACGGAGGGCGTAGCTGCTGAGACCGAAGTCTCGCAGGACGCTTCTACAGCCGGAGTTCCAGAAGCACCAGAGCAGGTAGAAGAGGAAACGGGTTCCGAAACGGTACCATCAGAGCCTGAGGTGGAAGCTGAAGTTGAGGAAGTAACCTCGGAAGCATCCGTGGAACCTGAAGCTTCGGAACCGACACCAGCATCGCCTGTGGAGACTGAGGCTCCGGAAGCTAGCTCCGAACCATCGGTAGAGCCCGAAGCGTCTGAGCCCACTTCTCAACCGGCTGAGGAATCGGAGACTCCTGAATCCCCCGTCGTACCATCGGAGGAACCAGAGGCTGCTGAACCCACCGGCACCGAGGCACCAGAGACTCCTGAAGCCTCCAGCGCACCCGAAACAACTGCAGCT]
consensusID : consensus_6740#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGCATTGCGACGACGCGCTCCTCGCAGTCCGATTCGATCGAGCAGATGGCACAGCAGCAGCAGCAGCCCAACCGCAGCGACAGTACCGACTCGATCGAGGCCCAGCAGCAGCTCCAACAGCAGCAGAAGCTCCAGCACCATCAGACGTACCATCAGACCACCACGCAGCAGACGCTGAGCGACACGAAGCGAGACTCGCTGGAATCACTGGCCGCCAGCAGCAGCGACAATCAGAGCGGATTCAGCAGTCCCACCAAGTCTGCCCACGGCTCTCGACCACTGTCCGACAGTGGAGTTGGAGCAAGCGGTACAACCGCTCATCATCAGCAGCAGCTGCAGCAGCAGCAGTTCCACCACCAAACAACGACGATGTCCACGCACACGGTCAGCACCGGTGGGCGCACGATGCAGAAGGACATATCGGCC]
[+] EMBL BM651621 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCATTGCGACGACGCGCTCCTCGCAGTCCGATTCGATCGAGCAGATGGCACAGCAGCAGCAGCAGCCCAACCGCAGCGACAGTACCGACTCGATCGAGGCCCAGCAGCAGCTCCAACAGCAGCAGAAGCTCCAGCACCATCAGACGTACCATCAGACCACCACGCAGCAGACGCTGAGCGACACGAAGCGAGACTCGCTGGAATCACTGGCCGCCAGCAGCAGCGACAATCAGAGCGGATTCAGCAGTCCCACCAAGTCTGCCCACGGCTCTCGACCACTGTCCGACAGTGGAGTTGGAGCAAGCGGTACAACCGCTCATCATCAGCAGCAGCTGCAGCAGCAGCAGTTCCACCACCAAACAACGACGATGTCCACGCACACGGTCAGCACCGGTGGGCGCACGATGCAGAAGGACATATCGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6740#0 CCGCGC-CGCTCCCGAACGCAAGTCGCGTAATTCTGTCCGGCTGTCCCTGTTCGTGCGGG 59
consensus_6740#2 CCGCCCACGCGTCCGCCCACGCGTCCGGGCATTGCGACGACGCGCTCCTCGCAGTCCGAT 60
consensus_6740#1 CCGCCCACGCGTCCGAACG-AGGCTCCGCAAGAAGAATCGGCAGCACC-----ATTGGAA 54
**** * *** *** * * * * * ** * *
consensus_6740#0 GCGTGCAAAAAAGGGCTTTGCCATCGAAGGAACGTCCCTCGGTAAGCAGCTGTGCGGTTC 119
consensus_6740#2 TCGATCGAGCAGATGGCACAGCA--GCAGCAGCAGCCCAACCGCAGCGACAGTACCGACT 118
consensus_6740#1 GACACCGAATTACCGGAACAGTCGGAAACAACCGTACCGACGGAAGAATCTGCACCGTCA 114
* * * * * * ** ** * * * *
consensus_6740#0 CGAGCCGGATGCAGCAAGCGAAATTCCGTGCGCTTTGACAACGTTAAAATTTCACCTTTC 179
consensus_6740#2 CGATCGAGGCCCAGCAGCAGCTCCAACAGCAGCAGAAGCTCCAGCACCATCAGACGTACC 178
consensus_6740#1 ACATC-GGTCCCAGAAGCAGAGACAACGGCGCAATCAACCAATGCGGAAGAGGAACAGTC 173
* * * *** * * * * * * *
consensus_6740#0 ACTTGCTTCTGTCATCCAAGGGGGAGAGCAACGTGACGAACAAACACCGCAAGGCACCTG 239
consensus_6740#2 ATCAGACCACCACGCAGCAGACGCTGAGCGACACGAAGCG-AGACTCGCTGGAATCACTG 237
consensus_6740#1 CCCCGC---CGAAACGGAATTGCCGGAAGAAAACAATTCGCCGGCA--GTAGAAGAATCA 228
* * ** * * *
consensus_6740#0 AGTGAGTGAGTGAGCGATGGCCGGAATACTTTCGATATCGTCGCGAAATTTGCCCCGCGC 299
consensus_6740#2 GCCGCCAGCAGCAGCGACAATCAGAGCGGATTCAGCAGTCCCACCAAGTCTGCCC---AC 294
consensus_6740#1 ACCACCTTAGC--GCCACCATCGGAAGGC-----GTATCCGGACAGGAATCAGTTGCAAC 281
** * * ** * * *
consensus_6740#0 AGCCCTCCGTCTCGGTCTGCGTTCATTGGAAGGCCAATCAGGACCCCAGCAGGGCACTGT 359
consensus_6740#2 GGCTCTCGACCACTGTCCGA---CAGTGGAGTTGGAGCAAGCGGTACAACCGCTCATCAT 351
consensus_6740#1 GGAAG-CAGCCGAGGTAGAAGC-TAGCGAAAACACAGAATCGGCTGTAGCGACGGA--AC 337
* * * ** * * * * * * *
consensus_6740#0 AACCGGTTCGCGATCCTACCACCAGGGGCGTCGATT-GTTGCCGAGCGTCGCCGTCCG-G 417
consensus_6740#2 CAGCAG----CAGCTGCAGCAGCAGCAGT-TCCACC-ACCAAACAACGACGATGTCCACG 405
consensus_6740#1 AGACGG----AAGCATCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAACAATCA 393
* * * * * * * * * *
consensus_6740#0 TCCGCGGTCACCGACAGTGG-CAGACGTTGCGAATCCGTTCGAAACTCTATCAA--GGCA 474
consensus_6740#2 CACACGGTCAGCACCGGTGGGCGCACGATGCAGAAGGACATATCGGCC------------ 453
consensus_6740#1 TCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAATCGACG 453
* *** * * * *** * *
consensus_6740#0 CAGGGATGGGCTGTGAACGAGCGGGCCATCTTCACCTCGGCCCGCATGCTGTCGTCGGAA 534
consensus_6740#2 ------------------------------------------------------------
consensus_6740#1 GAGGGCGTAGCTGCTGA-GACCGAAGTCTCGCAGGACGCTTCTACAGCCGGAGTTCCAGA 512
consensus_6740#0 ATCGTGAAGGTGCCTCCGTTTGCCGATTCCGTGTCCGAGGGCGATGTGA-AGTTTGAGAA 593
consensus_6740#2 ------------------------------------------------------------
consensus_6740#1 AGCACCAGAGCAGGTAGAAGAGGAAACGGGTTCCGAAACGGTACCATCAGAGCCTGAGGT 572
consensus_6740#0 GAAAGTCGGCGATGCGGTGGCCGCCGACGAGGTGGTGATGGAGATTGAAACCGACAAGAC 653
consensus_6740#2 ------------------------------------------------------------
consensus_6740#1 GGAAGCTGAAGTTGAGGAAGTAACCTCGGAAGCATCCGTGGAACCTGAAGCTT-CGGAAC 631
consensus_6740#0 TACCGTCGGTGTCCCGGCCCCGGGTCATGGTATTATCGAGGAGATCTA---CGTCGCGGA 710
consensus_6740#2 ------------------------------------------------------------
consensus_6740#1 CGACACCAGCATCGCCTGTGGAGACTGAGGCTCCGGAAGCTAGCTCCGAACCATCGGTAG 691
consensus_6740#0 CGCCACCACCGTGCTGTCGCGTGCCATCGCCGAGCTGGGCATCTACCCGGCGGTCGATCC 770
consensus_6740#2 ------------------------------------------------------------
consensus_6740#1 AGCCCGAAGCGTCTGAGCCCACTTCTCAACCGGCTGAGGAATCGGAGACTCCTGAATCCC 751
consensus_6740#0 GCTCGATTCGACCTCGCGTATCATGGACC-CGAACATCATCGGCGCCGAGCACTACAACA 829
consensus_6740#2 ------------------------------------------------------------
consensus_6740#1 CCGTCGTACCATCGGAGGAACCAGAGGCTGCTGAACCCACCGGCACCGAG-GCACCAGAG 810
consensus_6740#0 TCGCCCGTGGCGTGCAGAAGATCCTGCAGGACTACAAGTCGCTCCAGGACAT 881
consensus_6740#2 ----------------------------------------------------
consensus_6740#1 ACTCCTGAAGCCTCCAGCGCACCCGAAACAACTGCAGCT------------- 849
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||