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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 839 fasta sequence
[GCACGGATAATGCGTATGTTGCGAGTTCTTTTGTTAGTTTTGCAAATGATCGGCCACTCGCAGTTGAAAAGCGTTCAACGGTAAACGGTCGCCATTTTCCGTAAGCAAAAGTTATCATTGCAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAAACAATGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAACAAGGCGTCTAACGCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAGTTGACCGCGGCTCCTGGTTGACCGAGTGAATATGTACCGCAGAAAATTATGCAGCCAACTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACACGGATGCAAGAAGGACATTAAATTCGAATAAGGTCTTACACCAAAGCTGGATACAACGAGCGAAAATGGTAGCGTTTGTGAATAAAGTCTACGTTACATGGGGTTACATANGGTGCATGGGTTACGCAAATATTTGATGCATATGTTTTGTCATACTTCACAAGGAAGCTCCTCACTTACCG]
[+] EMBL BX628286 [GCACGGATAATGCGTATGTTGCGAGTTCTTTTGTTAGTTTTGCAAATGATCGGCCACTCGCAGTTGAAAAGCGTTCAACGGTAAACGGTCGCCATTTTCCGTAAGCAAAAGTTATCATTGCAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAAACAATGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAACAAGGCGTCTAACGCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAGTTGACCGCGGCTCCTGGTTGACCGAGTGAATATGTACCGCAGAAAATTATGCAGCCAACTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACACGGATGCAAGAAGGACATTAAATTCGAATAAGGTCTTACACCAAAGCTGGATACAACGAGCGAAAATGGTAGCGTTTGTGAATAAAGTCTACGTTACATGGGGTTACATANGGTGCATGGGTTACGCAAATATTTGATGCATATGTTTTGTCATACTTCACAAGGAAGCTCCTCACTTACCG]
[+] EMBL BM577974 [ ccgGTTGAAAAGCGTTCAACGGTAAACGGTCGCCATTTTACGCAAGCAAAAGTTATCATTGCAATCGTGCCTTGCAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTGAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAGACAATGATGTCAAAGATGAAAAGGTGGAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAACAAGGCGTCTAACGCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTGCCGGATTCGGCAAGCGAGTTACTAGCGAGCCCCGAGCAGCCAAAGAAATAGTTGACCGCGGCTCCTGGTTGACCGAGTGAATATGTACCGCAGAAAATTATGCAGCCAGCTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGCATTTCCCACAAGGATGCAAGAAGGATATTTAATTCGAATTCGATCTTACACCAAAGCTGGATACAAAGAGTGAAAATCGCAGCGTTTGT ]
consensusID : consensus_6745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[CCGAAAGCGTTCAACGGCAAACGGTCGCCATTTTACGCAAGCAAAAGTTATCATTGCAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACCGGCGCTATGGATGCCGATGAAACCGATGAATCTTCGGAAGACGAAGACGATGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAATAACAAGGCGTCTAACTCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAGTTGACCGCGGCTCATGGTTGACCGAGTGAATATGTACCGCAGAAAATTGTAGGTAAATTAGCACTAAGTGTTTCCTTTGCAGTGTGTAACTCCTATTATTTCAATTTTATATGCAGCCAGCTTACAGAATTAATCTGTAAATCATTTACATTAGCAGGTCTAATGTTGCATTTCTCACAAGGATGCAAGAAGGATATTTAATTCGAATTCGATCTTACACCAAA]
[+] EMBL BM611879 [CCGAAAGCGTTCAACGGCAAACGGTCGCCATTTTACGCAAGCAAAAGTTATCATTGCAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACCGGCGCTATGGATGCCGATGAAACCGATGAATCTTCGGAAGACGAAGACGATGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAATAACAAGGCGTCTAACTCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAGTTGACCGCGGCTCATGGTTGACCGAGTGAATATGTACCGCAGAAAATTGTAGGTAAATTAGCACTAAGTGTTTCCTTTGCAGTGTGTAACTCCTATTATTTCAATTTTATATGCAGCCAGCTTACAGAATTAATCTGTAAATCATTTACATTAGCAGGTCTAATGTTGCATTTCTCACAAGGATGCAAGAAGGATATTTAATTCGAATTCGATCTTACACCAAA]
consensusID : consensus_6745#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence
[GTGTAGTTTTCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGATATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAGACATTGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCT-TCGTAATTGGGCCCTAAGTAACAAGGC-GTCTAACG-CTGCATAGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAATTTACTGCGGCTCCTGGTTGACCGAGTGGATATGTACCGCAGAAAATTATGCAGCCAACTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACACGGATGCAAGAAGGACATTAAATTCGAATACGGTCTTACACCAAAGCTGGATACAACGGGCGAAAATGGTAGCGTTTGTGAATAAAGTCTACCTTACATGGGTTACATAGGTTGCATGGGTTACGCAAAAAAAAAAAAAAAAAAAAGGCCCCCTGTGCCCCCCCC]
[+] EMBL CNS08X78 [GTGTAGTTTTCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGATATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAGACATTGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCT TCGTAATTGGGCCCTAAGTAACAAGGC GTCTAACG CTGCATAGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAATTTACTGCGGCTCCTGGTTGACCGAGTGGATATGTACCGCAGAAAATTATGCAGCCAACTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACACGGATGCAAGAAGGACATTAAATTCGAATACGGTCTTACACCAAAGCTGGATACAACGGGCGAAAATGGTAGCGTTTGTGAATAAAGTCTACCTTACATGGGTTACATAGGTTGCATGGGTTACGCAAAAAAAAAAAAAAAAAAAAGGCCCCCTGTGCCCCCCCC]
[-] EMBL CNS08X79 [ AAATGGGAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGGACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGATATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAGACATTGATGTCAAAGATGAAAAGGTGCAACAAGAGACGTTGCAAGAAAACCTCTCGTAATTGGGCCCTAAGTAACAAGGCGGTCTAACGCCTGCATAGATAGCTTGTTGCGTTTCATGCGAAAAAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAATTTACTGCGGCTCCTGGTTGACCGAGTGGATATGTACCGCAGAAAATTATGCAGCCCACTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACACGGATGCAAGAAGGACATTAAATTCGAATACGGTCTTACACCAAAGCTGGATACAACGGGCGAAAATGGTAGCGTTTGTGAATAAAGTCTACCTTACATGGGTTACATAGGTTG AAAGGTTACGCAAA ]
consensusID : consensus_6745#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[ATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCTGGCGGAACTGCGTTTGAAGCTACAAATGAAAATACTGAATGTGGCCAGGCGACAGTACCAGCGGTGGAACCAGAGAACTTTGTTGACAAATCCGGCGCTATGGATGCTGATGAAACCGACGAATCTTCCGAAGAATAAGACGATGATGTCAAAGATGAAAAGGTGGAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAACAAGGCGTCTAAC]
[+] EMBL BM580874 [ATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCTGGCGGAACTGCGTTTGAAGCTACAAATGAAAATACTGAATGTGGCCAGGCGACAGTACCAGCGGTGGAACCAGAGAACTTTGTTGACAAATCCGGCGCTATGGATGCTGATGAAACCGACGAATCTTCCGAAGAATAAGACGATGATGTCAAAGATGAAAAGGTGGAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAACAAGGCGTCTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6745#1 ------------------------------------------------------------
consensus_6745#3 ------------------------------------------------------------
consensus_6745#0 GCACGGATAATGCGTATGTTGCGAGTTCTTTTGTTAGTTTTGCAAATGATCGGCCACTCG 60
consensus_6745#2 ------------------------------------------------------------
consensus_6745#1 ----CCGAAAGCGTTCAACGGCAAACGGTCGCCATTTTACGCAAGCAAAAGTTATCATTG 56
consensus_6745#3 ------------------------------------------------------------
consensus_6745#0 CAGTTGAAAAGCGTTCAACGGTAAACGGTCGCCATTTTCCGTAAGCAAAAGTTATCATTG 120
consensus_6745#2 ------------------------------------------------------------
consensus_6745#1 CAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTG 116
consensus_6745#3 ------------------------------------ATGGAAGACGCGATGGAAGCATTG 24
consensus_6745#0 CAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTG 180
consensus_6745#2 ----------GTGTAGTTTTCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTG 50
************************
consensus_6745#1 AAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAA 176
consensus_6745#3 AAAATAGCTGCAATCGATGCTGGCGGAACTGCGTTTGAAGCTACAAATGAAAATACTGAA 84
consensus_6745#0 AAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAA 240
consensus_6745#2 AAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAA 110
******************** * ************* ****************** ****
consensus_6745#1 TGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACC 236
consensus_6745#3 TGTGGCCAGGCGACAGTACCAGCGGT------GGAACCAGAGAACTTTGTTGACAAATCC 138
consensus_6745#0 TGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACC 300
consensus_6745#2 TGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGATATCTTTGTTGATGAAACC 170
**** **** *************** * ******* * ********* ** **
consensus_6745#1 GGCGCTATGGATGCCGATGAAACCGATGAATCTTCGGAAGACGAAGACGATGATGTCAAA 296
consensus_6745#3 GGCGCTATGGATGCTGATGAAACCGACGAATCTTCCGAAGAATAAGACGATGATGTCAAA 198
consensus_6745#0 GGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAAACAATGATGTCAAA 360
consensus_6745#2 GGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAGACATTGATGTCAAA 230
************** *********** ******** ***** ** ** **********
consensus_6745#1 GATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAATAAC 356
consensus_6745#3 GATGAAAAGGTGGAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAAC 258
consensus_6745#0 GATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAAC 420
consensus_6745#2 GATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAAC 290
************ ****************************************** ****
consensus_6745#1 AAGGCGTCTAACTCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTT 416
consensus_6745#3 AAGGCGTCTAAC------------------------------------------------ 270
consensus_6745#0 AAGGCGTCTAACGCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTT 480
consensus_6745#2 AAGGCGTCTAACGC-TGCATAGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTT 349
************
consensus_6745#1 ATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAG 476
consensus_6745#3 ------------------------------------------------------------
consensus_6745#0 ATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAG 540
consensus_6745#2 ATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAA 409
consensus_6745#1 TTGACCGCGGCTCATGGTTGACCGAGTGAATATGTACCGCAGAAAATTGTAGGTAAATTA 536
consensus_6745#3 ------------------------------------------------------------
consensus_6745#0 TTGACCGCGGCTCCTGGTTGACCGAGTGAATATGTACCGCAGAAAATT------------ 588
consensus_6745#2 TTTACTGCGGCTCCTGGTTGACCGAGTGGATATGTACCGCAGAAAATT------------ 457
consensus_6745#1 GCACTAAGTGTTTCCTTTGCAGTGTGTAACTCCTATTATTTCAATTTTATATGCAGCCAG 596
consensus_6745#3 ------------------------------------------------------------
consensus_6745#0 --------------------------------------------------ATGCAGCCAA 598
consensus_6745#2 --------------------------------------------------ATGCAGCCAA 467
consensus_6745#1 CTTACAGAATTAATCTGTAAATCATTTACATTAGCAGGTCTAATGTTGCATTTCTCACAA 656
consensus_6745#3 ------------------------------------------------------------
consensus_6745#0 CTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACAC 658
consensus_6745#2 CTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACAC 527
consensus_6745#1 GGATGCAAGAAGGATATTTAATTCGAATTCGATCTTACACCAAA---------------- 700
consensus_6745#3 ------------------------------------------------------------
consensus_6745#0 GGATGCAAGAAGGACATTAAATTCGAATAAGGTCTTACACCAAAGCTGGATACAACGAGC 718
consensus_6745#2 GGATGCAAGAAGGACATTAAATTCGAATACGGTCTTACACCAAAGCTGGATACAACGGGC 587
consensus_6745#1 ------------------------------------------------------------
consensus_6745#3 ------------------------------------------------------------
consensus_6745#0 GAAAATGGTAGCGTTTGTGAATAAAGTCTACGTTACATGGGGTTACATANGGTGCATGGG 778
consensus_6745#2 GAAAATGGTAGCGTTTGTGAATAAAGTCTACCTTACATGGG-TTACATAGGTTGCATGGG 646
consensus_6745#1 ------------------------------------------------------------
consensus_6745#3 ------------------------------------------------------------
consensus_6745#0 TTACGCAAATATTTGATGCATAT---GTTTTGTCATACTTCACAAGGAAGCTCCTCACTT 835
consensus_6745#2 TTACGCAAAAAAAAAAAAAAAAAAAAGGCCCCCTGTGCCCCCCCC--------------- 691
consensus_6745#1 ----
consensus_6745#3 ----
consensus_6745#0 ACCG 839
consensus_6745#2 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||