cluster # 6747

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Anopheles gambiae
cluster # 6747 cluster # 6747 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6747#0 length = 1286 sequences # 4

consensus_6747#1 length = 593 sequences # 1
consensus_6747#2 length = 225 sequences # 1

consensusID : consensus_6747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1286
fasta sequence

                              [CCGTCCTTCTACATCCTCCCCTCCATTATCGATGGTTGATCGTCGTCGTGTCTCTTTTCCTCCTCTCTGCTCACATTATATGATCATTTTGTTTCCTAAAATTGCGTAGTTTTGAATTATGTTTTTGGTAAGCAAGCAAAGCTAGTAAAATATACCCTTTGCTTTTGCTAGCTATGGTGCATGCAGAATCACTGTGCCCAAACATCATTTCTCCCTACTACGTTTTTTTCAAGCCTAATAAAAACGTTTATAAATTTACAAGAAACAAAAAGAAGAAAAAAAAGAAGTAGTGGGCATGTAGTGCTGTTGCCATGCTCAAGAAGATTGGGCACTTGTTAGCAGCTTACTAACGGCTCAACACTACTCATCCGTGCTCATCATCATTGTACTATTTATGTTCTAAGAAATCGCTAAACCACGATCGCAGCACGCGGATTGTATGATGGTGTAGGTGGTTTGCCCCCCACATAGAACAACGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCCCGTTCCAGCGTAAGACAATGCTTCTCAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCGAACAGAAACTCGCTCTTCTGTACACAACAACAAAAAAGCGATAATAACAGAAGGGAGGCTCTGTCTGTCTGATCCAGCAGCGCCTCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAACAAACTCTTTCTAACCAATCCAACCGAAGCTGTAATAAAAATTACTCGCAGAAAGAATAGCACCTACCTTAGAGAAAGTGACAGAATAAGACTACAAGGTGTGATTATAGGAAGGGCAGAAAGAGTGCAACGGAACGAAACAGCGTACATTATACATAGGTCGAATCATTAGACAGAGCAGAGCGCACCAAAACCCTTGCGAAGGAGTAGAGGAAAAGTTAGACGAAACGAAACTGCGTAGCGATTTTTCTTTTTGGTTGTAGAGCTGACGATGCACTGTGCTGTTCAATACAGAAAAGAAGGAGCAAGACACGCACGTCAGAGAAGCTTTAGCAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAATGATTACAAGAGAATACATATTATACATCTAAATCT]

[+] EMBL BM607181             [CCGTCCTTCTACATCCTCCCCTCCATTATCGATGGTTGATCGTCGTCGTGTCTCTTTTCCTCCTCTCTGCTCACATTATATGATCATTTTGTTTCCTAAAATTGCGTAGTTTTGAATTATGTTTTTGGTAAGCAAGCAAAGCTAGTAAAATATACCCTTTGCTTTTGCTAGCTATGGTGCATGCAGAATCACTGTGCCCAAACATCATTTCTCCCTACTACGTTTTTTTCAAGCCTAATAAAAACGTTTATAAATTTACAAGAAACAAAAAGAAGAAAAAAAAGAAGTAGTGGGCATGTAGTGCTGTTGCCATGCTCAAGAAGATTGGGCACTTGTTAGCAGCTTACTAACGGCTCAACACTACTCATCCGTGCTCATCATCATTGTACTATTTATGTTCTAAGAAATCGCTAAACCACGATCGCAGCACGCGGATTGTATGATGGTGTAGGTGGTTTGCCCCCCACATAGAACAACGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCCCGTTCCAGCGTAAGACAATGCTTCTCAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCGAACAGAAACTCGCTCTTCTGTACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX618941             [                                                                                                                                                                                                                                                                                                                                                                                                                                         AGCACGCGGATTGTATGATGGTGTAGGTGGTTTGCCCCCCACATAGAACAACGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCCCGTTCCAGCGTAAGACAATGCTTCTCAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGAAAAGC  TACTTGAACGACGAACAGTCGAACAGAAACTCGCTCTTCTGTACACAACAACAAAAAAGCGATAATAACAGAAGGGAGGCTCTGTCTGTCTGATCCAGCAGCGCCTCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAACAAACTCTTTCTAACCAATCCAACCGAAGCTGTAATAAAAATTACTCGCAGAAAGAATAGCACCTACCTTAGAGAAAGTGACAGAATAAGACTACAAGGTGTGATTATAGGAAGGGCAGAAAGAGTGCAACGGAACGAAACAGCGTACATTATACATAGGTCGAATCATTAGACAGAGCAGAGCGCACCAAAACCCTTGCGAAGGAGTAGAGGAAAAGTTAGACGAAACGAAACTGCGTAGCGATTTTTCTTT                                                                                                                                                                                                                                                                        ]
[+] EMBL BX614579             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCCACATAGAACAACGCTTCGTTTAGCAGAAACACTAAGAAATGAAAAAATCCCGTCCCAGCGTAAGACAATGCTTCTCAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGGAAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX616177             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGGAGTAGAGGAAAAGTTAGACGAAACGAAACTGCGTAGCGATTTTTCTTTTTGGTTGTAGAGCTGACGATGCACTGTGCTGTTCAATACAGAAAAGAAGGAGCAAGACACGCACGTCAGAGAAGCTTTAGCAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAATGATTACAAGAGAATACATATTATACATCTAAATCT]




>consensus_6747#0
CCGTCCTTCTACATCCTCCCCTCCATTATCGATGGTTGATCGTCGTCGTGTCTCTTTTCC
TCCTCTCTGCTCACATTATATGATCATTTTGTTTCCTAAAATTGCGTAGTTTTGAATTAT
GTTTTTGGTAAGCAAGCAAAGCTAGTAAAATATACCCTTTGCTTTTGCTAGCTATGGTGC
ATGCAGAATCACTGTGCCCAAACATCATTTCTCCCTACTACGTTTTTTTCAAGCCTAATA
AAAACGTTTATAAATTTACAAGAAACAAAAAGAAGAAAAAAAAGAAGTAGTGGGCATGTA
GTGCTGTTGCCATGCTCAAGAAGATTGGGCACTTGTTAGCAGCTTACTAACGGCTCAACA
CTACTCATCCGTGCTCATCATCATTGTACTATTTATGTTCTAAGAAATCGCTAAACCACG
ATCGCAGCACGCGGATTGTATGATGGTGTAGGTGGTTTGCCCCCCACATAGAACAACGCT
TCGTTTAGCAGATACACTAAGAAATGAAAAAATCCCGTTCCAGCGTAAGACAATGCTTCT
CAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAA
ACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCGAACAGAAAC
TCGCTCTTCTGTACACAACAACAAAAAAGCGATAATAACAGAAGGGAGGCTCTGTCTGTC
TGATCCAGCAGCGCCTCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAACAAACTCTTTC
TAACCAATCCAACCGAAGCTGTAATAAAAATTACTCGCAGAAAGAATAGCACCTACCTTA
GAGAAAGTGACAGAATAAGACTACAAGGTGTGATTATAGGAAGGGCAGAAAGAGTGCAAC
GGAACGAAACAGCGTACATTATACATAGGTCGAATCATTAGACAGAGCAGAGCGCACCAA
AACCCTTGCGAAGGAGTAGAGGAAAAGTTAGACGAAACGAAACTGCGTAGCGATTTTTCT
TTTTGGTTGTAGAGCTGACGATGCACTGTGCTGTTCAATACAGAAAAGAAGGAGCAAGAC
ACGCACGTCAGAGAAGCTTTAGCAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAA
TATACGGATAGACAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATA
GACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAATGATTACAAG
AGAATACATATTATACATCTAAATCT

consensusID : consensus_6747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [CCGTTTATAAATTCGCAAGAAAAAAAAAAGAATAAAAAAAGAAGTAGTGGACAGGTAGTGCTGTTGCCATGCTCAAGAAGATTGGGCAATTGTTTGCAGCTTACTAACGGCTCTACTACTCATCCGTGCTCATCATCATTGTAGTAATATGTTCAAAGAAATCGCTAAACCACGATCGCAGCACGCGGATTTTATGATGGTGTAAATGGTTTGCCCCCCATAGAATATCGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCACGTTCCAGCGTAAGACAATGCTTCTCAAAAAGAGAGAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCAAAGAAACTACTCGCTCTTCTATACACAACAACAAAAAAGCGATAATAACAGGACGGGGGCTCTGTCTGCCTGATCCAGCAGCAGCCGAAAGTGGAAGAGCAGCGCCCCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAAACAGGCTCTTTCTAACCAATTCAACCGAAGCTGTAATACAAAACAAAAATGATCGCAGAAAGAAT]

[+] EMBL BM634747             [CCGTTTATAAATTCGCAAGAAAAAAAAAAGAATAAAAAAAGAAGTAGTGGACAGGTAGTGCTGTTGCCATGCTCAAGAAGATTGGGCAATTGTTTGCAGCTTACTAACGGCTCTACTACTCATCCGTGCTCATCATCATTGTAGTAATATGTTCAAAGAAATCGCTAAACCACGATCGCAGCACGCGGATTTTATGATGGTGTAAATGGTTTGCCCCCCATAGAATATCGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCACGTTCCAGCGTAAGACAATGCTTCTCAAAAAGAGAGAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCAAAGAAACTACTCGCTCTTCTATACACAACAACAAAAAAGCGATAATAACAGGACGGGGGCTCTGTCTGCCTGATCCAGCAGCAGCCGAAAGTGGAAGAGCAGCGCCCCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAAACAGGCTCTTTCTAACCAATTCAACCGAAGCTGTAATACAAAACAAAAATGATCGCAGAAAGAAT]




>consensus_6747#1
CCGTTTATAAATTCGCAAGAAAAAAAAAAGAATAAAAAAAGAAGTAGTGGACAGGTAGTG
CTGTTGCCATGCTCAAGAAGATTGGGCAATTGTTTGCAGCTTACTAACGGCTCTACTACT
CATCCGTGCTCATCATCATTGTAGTAATATGTTCAAAGAAATCGCTAAACCACGATCGCA
GCACGCGGATTTTATGATGGTGTAAATGGTTTGCCCCCCATAGAATATCGCTTCGTTTAG
CAGATACACTAAGAAATGAAAAAATCACGTTCCAGCGTAAGACAATGCTTCTCAAAAAGA
GAGAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGA
AAAGCTTTACTTGAACGACGAACAGTCAAAGAAACTACTCGCTCTTCTATACACAACAAC
AAAAAAGCGATAATAACAGGACGGGGGCTCTGTCTGCCTGATCCAGCAGCAGCCGAAAGT
GGAAGAGCAGCGCCCCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAAACAGGCTCTTTC
TAACCAATTCAACCGAAGCTGTAATACAAAACAAAAATGATCGCAGAAAGAAT

consensusID : consensus_6747#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [TTTTTTTTTTTTTTGTAGANCTGACGATGCACTGTGCTGTTCAATACAGAAAAGAAGGAGCAAGACACGCACGTCAGAGAAGCTTTAGCAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAATGATTACAAGAGAATACATATTATACATCTAAATCTATT]

[+] EMBL BX626139             [TTTTTTTTTTTTTTGTAGANCTGACGATGCACTGTGCTGTTCAATACAGAAAAGAAGGAGCAAGACACGCACGTCAGAGAAGCTTTAGCAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAATGATTACAAGAGAATACATATTATACATCTAAATCTATT]




>consensus_6747#2
TTTTTTTTTTTTTTGTAGANCTGACGATGCACTGTGCTGTTCAATACAGAAAAGAAGGAG
CAAGACACGCACGTCAGAGAAGCTTTAGCAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGA
ACAAAATATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCG
CAACAATGATTACAAGAGAATACATATTATACATCTAAATCTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6747#0      CCGTCCTTCTACATCCTCCCCTCCATTATCGATGGTTGATCGTCGTCGTGTCTCTTTTCC 60
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      TCCTCTCTGCTCACATTATATGATCATTTTGTTTCCTAAAATTGCGTAGTTTTGAATTAT 120
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      GTTTTTGGTAAGCAAGCAAAGCTAGTAAAATATACCCTTTGCTTTTGCTAGCTATGGTGC 180
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      ATGCAGAATCACTGTGCCCAAACATCATTTCTCCCTACTACGTTTTTTTCAAGCCTAATA 240
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      AAAACGTTTATAAATTTACAAGAAACAAAAAGAAGAAAAAAAAGAAGTAGTGGGCATGTA 300
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      GTGCTGTTGCCATGCTCAAGAAGATTGGGCACTTGTTAGCAGCTTACTAACGGCTCAACA 360
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      CTACTCATCCGTGCTCATCATCATTGTACTATTTATGTTCTAAGAAATCGCTAAACCACG 420
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      ATCGCAGCACGCGGATTGTATGATGGTGTAGGTGGTTTGCCCCCCACATAGAACAACGCT 480
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      TCGTTTAGCAGATACACTAAGAAATGAAAAAATCCCGTTCCAGCGTAAGACAATGCTTCT 540
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      CAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAA 600
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      ACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCGAACAGAAAC 660
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      TCGCTCTTCTGTACACAACAACAAAAAAGCGATAATAACAGAAGGGAGGCTCTGTCTGTC 720
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      TGATCCAGCAGCGCCTCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAACAAACTCTTTC 780
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      TAACCAATCCAACCGAAGCTGTAATAAAAATTACTCGCAGAAAGAATAGCACCTACCTTA 840
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      GAGAAAGTGACAGAATAAGACTACAAGGTGTGATTATAGGAAGGGCAGAAAGAGTGCAAC 900
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ------------------------------------------------------------
                                                                                  

consensus_6747#0      GGAACGAAACAGCGTACATTATACATAGGTCGAATCATTAGACAGAGCAGAGCGCACCAA 960
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ----------------------CCGTTTATAAATTCGCAAGAAAAAAAAAAGAATAAAAA 38
                                                                                  

consensus_6747#0      AACCCTTGCGAAGGAGTAGAGGAAAAGTTAGACGAAACGAAACTGCGTAGCGATTTTTCT 1020
consensus_6747#2      ------------------------------------------------------TTTTTT 6
consensus_6747#1      AAGAAGTAGTGGACAGGTAGTGCTGTTGCCATGCTCAAGAAGATTGGGCAATTGTTTGCA 98
                                                                            ***   

consensus_6747#0      TTTTGGTTGTAGAGCTGACGATGCACTGTGCTGTTCAATACAGAAAAGA-AGGAGCAAGA 1079
consensus_6747#2      TTTTTTTTGTAGANCTGACGATGCACTGTGCTGTTCAATACAGAAAAGA-AGGAGCAAGA 65
consensus_6747#1      GCTTACTAACGGCTCTACTACTCATCCGTGCTCATCATCATTGTAGTAATATGTTCAAAG 158
                        **  *    *  **     *   * *****  ***  *  * *   * * *  ***  

consensus_6747#0      CACGCACGTCAGAGAAGCTTTAGCA---GAGGTTTA--GCGGTAAAGGTGGTGT-TGTAG 1133
consensus_6747#2      CACGCACGTCAGAGAAGCTTTAGCA---GAGGTTTA--GCGGTAAAGGTGGTGT-TGTAG 119
consensus_6747#1      AAATCGCTAAACCACGATCGCAGCACGCGGATTTTATGATGGTGTAAATGGTTTGCCCCC 218
                       *  * *   *          ****   *   ****    ***  *  **** *      

consensus_6747#0      AACAAAATATA---CGGATAGACAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAA 1190
consensus_6747#2      AACAAAATATA---CGGATAGACAG----------------------------------- 141
consensus_6747#1      CATAGAATATCGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCACGTTCCAGCGT 278
                       * * *****      * *   ***                                   

consensus_6747#0      TATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAA 1250
consensus_6747#2      ---------------AAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAA 186
consensus_6747#1      AAGACAATGCTTCTCAAAAAGAGAGAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAA 338
                                     ***** *  *   *     * ** **      * * * **** **

consensus_6747#0      TGATTACAAGAGAATACATATTATACATCTAAATCT------------------------ 1286
consensus_6747#2      TGATTACAAGAGAATACATATTATACATCTAAATCTATT--------------------- 225
consensus_6747#1      CCAC-ACAAAAACTCAC-TACTGAAAAGCTTTACTTGAACGACGAACAGTCAAAGAAACT 396
                        *  **** *    ** ** *  * * **  *  *                        

consensus_6747#0      ------------------------------------------------------------
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      ACTCGCTCTTCTATACACAACAACAAAAAAGCGATAATAACAGGACGGGGGCTCTGTCTG 456
                                                                                  

consensus_6747#0      ------------------------------------------------------------
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      CCTGATCCAGCAGCAGCCGAAAGTGGAAGAGCAGCGCCCCGAGAGAAGGAAGAGAGGGCA 516
                                                                                  

consensus_6747#0      ------------------------------------------------------------
consensus_6747#2      ------------------------------------------------------------
consensus_6747#1      CAGTTACTTAAAACAGGCTCTTTCTAACCAATTCAACCGAAGCTGTAATACAAAACAAAA 576
                                                                                  

consensus_6747#0      -----------------
consensus_6747#2      -----------------
consensus_6747#1      ATGATCGCAGAAAGAAT 593