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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1190 fasta sequence
[CCGCGGACGCGTGGGTTTTTGCGTAGAAATCAAGATTTTTGTTTCCAAACCCTTGTCAGTCATTGGATCATTCTGCACGACTTCCATTTCGTCTATTTCTCTTACTCTCCTCTTTCTATCTCTCTTTCTCTATCTCTCTATCATCTCTTCTCAAGCGAGTATGTCTACTTTAATTAGTCGTTAACAAAAAAACAAGAAAAACAGATCAATATCGTAGCTAGACCATTATCAAAAAACCGAATTAAAAAGCAAACTAAAAAAAATCACAAAAAACTCATCCTAGAATCACGATATGATCATCTTACCTTTCTACTAATCCATACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATGTGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAATAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATGGGATGCAAACAACAGTTATAACCAAGATAAAAAAGAAGCAAGAAGAAGTGGAAGAGGATTTTTTTTTTCGTTTCAAATAGGAACATAGAATCAAGCCCGCAAGAAAACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACACTCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGACGTAACGA-AGAGCAGTATGAATATTACCACTAATCGTTGCAAACGAGTCGAGTTTTGGTATGCGAGTTGCATACTGT-TAGGCGGTATTGCTACCG-CTTTCGAAAGTGTATGCAATTTGAA-GCGCAAAAGTAGCTCCTTTTTATAGCACGCCTATCTGAATGGCATGTGGCATTATCAAGTTAAAATATGTTCTGCTTAGTTCACA-GCTGGAAACAGTTGCTGTATTTTTTATT-TTTTATTTACCAACATATTCTTACTCCA-TTTCCATGAGACACCACATGGCCACACATGGTCAGGCTACTTTAATGCTGTATCATCTCGCATAGAGAGCCGCCTGAACGGAAGGGGCTACTTAAACATTATTCCTTTCTCTCACAAGTCATTTCGATAAAGTCCAGAAACNAACAGTGTACATN]
[+] EMBL BM609264 [CCGCGGACGCGTGGGTTTTTGCGTAGAAATCAAGATTTTTGTTTCCAAACCCTTGTCAGTCATTGGATCATTCTGCACGACTTCCATTTCGTCTATTTCTCTTACTCTCCTCTTTCTATCTCTCTTTCTCTATCTCTCTATCATCTCTTCTCAAGCGAGTATGTCTACTTTAATTAGTCGTTAACAAAAAAACAAGAAAAACAGATCAATATCGTAGCTAGACCATTATCAAAAAACCGAATTAAAAAGCAAACTAAAAAAAATCACAAAAAACTCATCCTAGAATCACGATATGATCATCTTACCTTTCTACTAATCCATACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATGTGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAATAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATGGGATGCAAACAACAGTTATAACCAAGATAAAAAAGAAGCAAGAAGAAGTGGAAGAGGATTTTTTTTTTCGTTTCAAATAGGAACATAGAATCAAGCCCGCAAGAAAACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCA ]
[+] EMBL BM584667 [ ccgATCGAATCGGTCATGAAAACATTATGTAAATAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATGGGATGCAAACAACAGTTATAACCAAGATAAAAAAGAAGCAAGAAGAAGTGGAAGAGGATTTTTTTTTTCGTTTCAAATAGGAACATAGAATCAAGCCCGCAAGAAAACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACACTCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGACGTAACGA AGAGCAGTATGAATATTACCACTAATCGTTGCAAACGAGTCGAGTTTTGGTATGCGAGTTGCATACTGT TAGGCGGTATTGCTACCG CTTTCGAAAGTGTATGCAATTTGAA GCGCAAAAGTAGCTCCTTTTTATAGCACGCCTATCTGAATGGCATGTGGCATTATCAAGTTAAAATATGTTCTGCTTAGTTCACA GCTGGAAACAGTTGCTGTATTTTTTATT TTTTATTTACCAACATATTCTTACTCCA TTTCCATGAGACAC ]
[+] EMBL AL693312 [ ccgcggttaTTTC AATAGGAACATAGACTCAAG CCGCAAGAATACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACACTCTGA CCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGACGTAACGACAGAGCAGTATGAATATTACCACTAATCGTTGCAAACGAGTCGAG TTGGTATGCGAGTTGCATACTGTNTAGGCGGTATTGCTACCGNGTTTCGAAAGTGTATGCAATTTGAAGGCGCAAAAGTAGCTCCTTTTTATAGCACGCCTATCTGANTGGCATGTGGCATTATCAAGTTAAAATATGTTCTGCTTAGTTCACACGCTGGAAACAGTTGCTGTATTNCACATTATNTTATTTACAAACATCTTCTTACTCAATTTTCAATGAGCGACCACATGGCCACACATGGTCAGGCTACTTTAATGCTGTATCATCTCGCATAGAGAGCCGCCTGAACGGAAGGGGCTACTTAAACATTATTCCTTTCTCTCACAAGTCATTTCGATAAAGTCCAGAAACNAACAGTGTACATN]
consensusID : consensus_6748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[AATCGCCCGCAGGTATTATCTTACCTTTCTACTAATCCNTACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATGTGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAATAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATGGGATGCAAACAACAGTTATAACCAAGATAAAAAAGAAGCAAGAAGAAGTGGAAGAGGATTTTTTTTTTCGTTTCAAATAGGAACATAGAATCAAGCCCGCAAGAAAACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACACTCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGACGTAACGAAGAGCAGTATGAATATTACCACTAATCGTTGCCAAACGAGTCGACGTTTTGGTATGCGAGTTGCACTACTGTTAGGCGGTATTGCTACCCGCTTTCGAAAAGTGTAAT]
[+] EMBL AL933460 [AATCGCCCGCAGGTATTATCTTACCTTTCTACTAATCCNTACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATGTGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAATAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATGGGATGCAAACAACAGTTATAACCAAGATAAAAAAGAAGCAAGAAGAAGTGGAAGAGGATTTTTTTTTTCGTTTCAAATAGGAACATAGAATCAAGCCCGCAAGAAAACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACACTCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGACGTAACGAAGAGCAGTATGAATATTACCACTAATCGTTGCCAAACGAGTCGACGTTTTGGTATGCGAGTTGCACTACTGTTAGGCGGTATTGCTACCCGCTTTCGAAAAGTGTAAT]
consensusID : consensus_6748#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[AACAACAGTTATAACCAAGATAAAAAAAGAAGCAAGAAAAAGAGGAAGAAGCAGATTTTTTTCTTTCGTTTCAAATAGCAACATAGAAATCATGCCCGCAAGAAAACAACCTACGCATAGATTCGTAAACACTAGTTAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGCACACGGGAACACTCTGTCCCTGATGTTGTGTTGCTTTCGGTGGTGTCGGACTAGCAATTGATATCACGCGAACGGAACGAAGAGCAGTATGAATTTCCACTAATCGTTGCAAACGAGTCGAGTTTTGGCATGCGAGTTGCATACTGTTAGGCGGCATTGCTACCGCTTTTCGAAGTGTATGCAATTTTGAAGCGCAAAGTAGCTGCTGTTTTTAGCAC]
[+] EMBL BX605629 [AACAACAGTTATAACCAAGATAAAAAAAGAAGCAAGAAAAAGAGGAAGAAGCAGATTTTTTTCTTTCGTTTCAAATAGCAACATAGAAATCATGCCCGCAAGAAAACAACCTACGCATAGATTCGTAAACACTAGTTAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGCACACGGGAACACTCTGTCCCTGATGTTGTGTTGCTTTCGGTGGTGTCGGACTAGCAATTGATATCACGCGAACGGAACGAAGAGCAGTATGAATTTCCACTAATCGTTGCAAACGAGTCGAGTTTTGGCATGCGAGTTGCATACTGTTAGGCGGCATTGCTACCGCTTTTCGAAGTGTATGCAATTTTGAAGCGCAAAGTAGCTGCTGTTTTTAGCAC]
consensusID : consensus_6748#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence
[GCGTAGAAATCAAGATTTTTTGTTTCCAAACCCTTGTCAGTCATTGGATCATTCTGCACGACTTCCATTTCGTCTATTTCTCTCTTACTCTCTCTCTCTTTCTCTCTCTCTTTCTCTATCTCTCTTTATCATCTCTTCTCAAGCGAGTATGTCTACTTTAATTAGTCGTTAACAAAAAAAAAAAAAAAGGGCGGCGCTCGCCGGACGCGTGGGCGG]
[-] EMBL BM623975 [GCGTAGAAATCAAGATTTTTTGTTTCCAAACCCTTGTCAGTCATTGGATCATTCTGCACGACTTCCATTTCGTCTATTTCTCTCTTACTCTCTCTCTCTTTCTCTCTCTCTTTCTCTATCTCTCTTTATCATCTCTTCTCAAGCGAGTATGTCTACTTTAATTAGTCGTTAACAAAAAAAAAAAAAAAGGGCGGCGCTCGCCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6748#1 ------------------------------------------------------------
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 CCGCGGACGCGTGGGTTTTTGCGTAGAAATCAAGATTTTTGTTTCCAAACCCTTGTCAGT 60
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 ------------------------------------------------------------
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 CATTGGATCATTCTGCACGACTTCCATTTCGTCTATTTCTCTTACTCTCCTCTTTCTATC 120
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 ------------------------------------------------------------
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 TCTCTTTCTCTATCTCTCTATCATCTCTTCTCAAGCGAGTATGTCTACTTTAATTAGTCG 180
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 ------------------------------------------------------------
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 TTAACAAAAAAACAAGAAAAACAGATCAATATCGTAGCTAGACCATTATCAAAAAACCGA 240
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 -----------------------------------------AATCGCCCGCAGGTATTAT 19
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 ATTAAAAAGCAAACTAAAAAAAATCACAAAAAACTCATCCTAGAATCACGATATGATCAT 300
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 CTTACCTTTCTACTAATCCNTACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATG 79
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 CTTACCTTTCTACTAATCCATACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATG 360
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 TGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAA 139
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 TGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAA 420
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 TAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATG 199
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 TAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATG 480
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 GGATGCAAACAACAGTTATAACCAAGATAAAAAA-GAAGCAAGAAGAAGTGGAAGAGGA- 257
consensus_6748#2 -------AACAACAGTTATAACCAAGATAAAAAAAGAAGCAAGAAAAAGAGGAAGAAGCA 53
consensus_6748#0 GGATGCAAACAACAGTTATAACCAAGATAAAAAA-GAAGCAAGAAGAAGTGGAAGAGGA- 538
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 ---TTTTTTTTTTCGTTTCAAATAGGAACATAGAA-TCAAGCCCGCAAGAAAACAACCTA 313
consensus_6748#2 GATTTTTTTCTTTCGTTTCAAATAGCAACATAGAAATCATGCCCGCAAGAAAACAACCTA 113
consensus_6748#0 ---TTTTTTTTTTCGTTTCAAATAGGAACATAGAA-TCAAGCCCGCAAGAAAACAACCTA 594
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 CGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCG 373
consensus_6748#2 CGCATAGATTCGTAAACACTAGTTAA-CAAATTCTTCTACACGCACGACACATTCACTCG 172
consensus_6748#0 CGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCG 654
consensus_6748#3 -----------------GCGTAGAAATCAAGATTTTTTGTTTCCAAACCCTTGTCAGTCA 43
* ** *** * ** * ** * *** **
consensus_6748#1 CAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACAC 433
consensus_6748#2 CAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGCACACGGGAACAC 232
consensus_6748#0 CAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACAC 714
consensus_6748#3 TTGGAT-CATTCTGCACGAC-TTCCATTTCGTCTATTTCTCTCTTA-------------C 88
** * ** * *** * * *** * * * * * *** *
consensus_6748#1 TCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGA 493
consensus_6748#2 TCTGTCCCTGATGTTGTGTTGCTTTCGGTGGTGTCGGACTAGCAATTGATATCACGCGAA 292
consensus_6748#0 TCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGA 774
consensus_6748#3 TCTCTCTCTCTTTCTCTCTCTCTTTCTCTA-TCTCTCTTTATCATCTCTTCTCAAGCG-- 145
*** * ** * * * * ***** * * ** * ** * * *** ***
consensus_6748#1 CGTAACGAAGAGCAGTATGAATATTACCACTAATCGTTGCCAAACGAGTCGACGTTTTGG 553
consensus_6748#2 CGGAACGAAGAGCAGTATGAATTT--CCACTAATCGTTGC-AAACGAGTCGA-GTTTTGG 348
consensus_6748#0 CGTAACGAAGAGCAGTATGAATATTACCACTAATCGTTGC-AAACGAGTCGA-GTTTTGG 832
consensus_6748#3 -------------AGTATGTCTACTTTAATTAGTCGTTAACAAAAAAAAAAA---AAAAG 189
****** * * ** ***** *** * * *
consensus_6748#1 TATGCGAGTTGCACTACTGTTAGGCGGTATTGCTACCCGCTTTCGAAAAGTGT--AAT-- 609
consensus_6748#2 CATGCGAGTTGCA-TACTGTTAGGCGGCATTGCTACCGCTTTTCGAAGTGTATGCAATTT 407
consensus_6748#0 TATGCGAGTTGCA-TACTGTTAGGCGGTATTGCTACCGCTTTCGAAAGTGTATGCAATTT 891
consensus_6748#3 GGCGGCGCTCGCCGGACGCGTGGGCGG--------------------------------- 216
* * ** ** * *****
consensus_6748#1 ------------------------------------------------------------
consensus_6748#2 TGAAGCGCAAAGTAGCTGCTGTTTTTAGCAC----------------------------- 438
consensus_6748#0 GAAGCGCAAAAGTAGCTCCTTTTTATAGCACGCCTATCTGAATGGCATGTGGCATTATCA 951
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 ------------------------------------------------------------
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 AGTTAAAATATGTTCTGCTTAGTTCACAGCTGGAAACAGTTGCTGTATTTTTTATTTTTT 1011
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 ------------------------------------------------------------
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 ATTTACCAACATATTCTTACTCCATTTCCATGAGACACCACATGGCCACACATGGTCAGG 1071
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 ------------------------------------------------------------
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 CTACTTTAATGCTGTATCATCTCGCATAGAGAGCCGCCTGAACGGAAGGGGCTACTTAAA 1131
consensus_6748#3 ------------------------------------------------------------
consensus_6748#1 -----------------------------------------------------------
consensus_6748#2 -----------------------------------------------------------
consensus_6748#0 CATTATTCCTTTCTCTCACAAGTCATTTCGATAAAGTCCAGAAACNAACAGTGTACATN 1190
consensus_6748#3 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||