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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6751#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[TTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTTTTTTAATTAACCCATTTTTTTAATTTTTTCAGTCTTTTTGTTATTGTTTTGCTAGAAAAAGATATGATGAATTTTGCATTGGAGAAGATTGAATTACTAACCATGAATTGGCATTTACATAATATTGCTTCCTTTCTTCTTCTTCTTTTTTTGCTCATAATAAATTGCGTAGTTGCTATTCTGCAGATGCGCGGCTTGCTGTGTGTGTGTGTGTATGTGTGAGGTGGTGCAGTGAAGTCGTGTTAGTTAGAAAGAAGAAGAAGAAGACGAAGAACACAGGTGCAGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACGTCATCACCATCATCTTCAAC]
[+] EMBL BX624445 [TTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTTTTTTAATTAACCCATTTTTTTAATTTTTTCAGTCTTTTTGTTATTGTTTTGCTAGAAAAAGATATGATGAATTTTGCATTGGAGAAGATTGAATTACTAACCATGAATTGGCATTTACATAATATTGCTTCCTTTCTTCTTCTTCTTTTTTTGCTCATAATAAATTGCGTAGTTGCTATTCTGCAGATGCGCGGCTTGCTGTGTGTGTGTGTGTATGTGTGAGGTGGTGCAGTGAAGTCGTGTTAGTTAGAAAGAAGAAGAAGAAGACGAAGAACACAGGTGCAGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACGTCATCACCATCATCTTCAAC]
consensusID : consensus_6751#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 510 fasta sequence
[CCGTGCCGGACGTGCATGGTGCGTGCGCGTGTATGTGTGCCCGGGAACGTAAGCAAGCGAAAGTCGTGTGTGCGCGTGCGTTTCGGCAAATTCCTGCAAAAAAAAAA--ACACACACACACAAGCGTGACAGTTTGCGCACAGTTCTACCGAGCGCGTGCGCCCGTTTGTGTGTATTTCGGCGAAAGCAAAGGTGTTGGTGTGCACTATTAGCTGATGGCAGACGAACGACCGTTACTTTGCCAAAACACGTGAACACAGGTGCAGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTA]
[+] EMBL BM641221 [CCGTGCCGGACGTGCATGGTGCGTGCGCGTGTATGTGTGCCCGGGAACGTAAGCAAGCGAAAGTCGTGTGTGCGCGTGCGTTTCGGCAAATTCCTGCAAAAAAAAAA ACACACACACACAAGCGTGACAGTTTGCGCACAGTTCTACCGAGCGCGTGCGCCCGTTTGTGTGTATTTCGGCGAAAGCAAAGGTGTTGGTGTGCACTATTAGCTGATGGCAGACGAACGACCGTTACTTTGCCAAAACACGTGAACACAGGTGCAGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTA]
[+] EMBL BX607025 [ CCGGACGTGCATGGTGCGTGCGCGTGTATGTGTGCCCGGGAACGTAAGCAAGCGAAAGTCGTGTGTGCGCGCGCGTTTCGGCAAATTCCTGCAAAAAAAAAAACACACACACACACAAGCGTGACAGTTTGCGCACAGTTCTACCGAGCGCGTGCGCCCGTTTGTGTGTATTTCGGCGAAAGCAAAGGTGTTGGTGTGCACT ]
consensusID : consensus_6751#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[AATCGGCCGAGGCGNTAGGCGTGCGCCCGTTTGTGTGTATTTCGGCGAAAGCAAATGGTGTTGGTGTGCACTATTAGCTGATGGCAGACGAACGACCGTTACTTTGCCAAAACACGTGAACACAGGTGCAGGTGCGTTTATGTGTGTTTGTCTGTGTTGGTTTGTGTGAGTGTGTGGGATTGTTGTTCTAAGTAGAGGATGGGCGGACGGAAAATCGATAGCGCAGCCGAAGGATTCTAAGCTGGCAAGAGTACGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAACAGGAAGAACGAAAGAAAAGCAAGAAACGAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACTTCATCACCATCAT]
[+] EMBL AL696727 [AATCGGCCGAGGCGNTAGGCGTGCGCCCGTTTGTGTGTATTTCGGCGAAAGCAAATGGTGTTGGTGTGCACTATTAGCTGATGGCAGACGAACGACCGTTACTTTGCCAAAACACGTGAACACAGGTGCAGGTGCGTTTATGTGTGTTTGTCTGTGTTGGTTTGTGTGAGTGTGTGGGATTGTTGTTCTAAGTAGAGGATGGGCGGACGGAAAATCGATAGCGCAGCCGAAGGATTCTAAGCTGGCAAGAGTACGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAACAGGAAGAACGAAAGAAAAGCAAGAAACGAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACTTCATCACCATCAT]
consensusID : consensus_6751#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[GGCCNAGGGGACGGTGCGAGAACGGCCGACAAAGGCGGCCGGCTGCAACCAACCGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACGTCATCACCATCATCTTCAACCTGTGCGCTGCCCCCCCCCCCCCCGGCAGCTTCCCAACTCCCATCCCGGGAGGATGGAGGCGACGAGCATCGATCAACGCCGAGGCAGCGTGTCG]
[+] EMBL AL934979 [GGCCNAGGGGACGGTGCGAGAACGGCCGACAAAGGCGGCCGGCTGCAACCAACCGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACGTCATCACCATCATCTTCAACCTGTGCGCTGCCCCCCCCCCCCCCGGCAGCTTCCCAACTCCCATCCCGGGAGGATGGAGGCGACGAGCATCGATCAACGCCGAGGCAGCGTGTCG]
consensusID : consensus_6751#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[GCCCCCAGGGTTATGTCGAGAACGGCCGACAANGGCGGCGNCTGCAATCCAACCGGATTCTAACTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCATGCTAGTTGAACAAGTGACAGCTAGAAGACCAGGAAGAAGAAAGAAAAGCAAGAAAGAANGAAACAAAGGGGGGNGAAAAGATTCGTAACAAGGTGTCGGCTCAGCATTCTGTCGAAGGCGTTCCACATTACACATATCAGCGGCGACAACGGTGTGCCGACGATAGTAAACAGAAGTGTCGATCACACATCATCATTCAACCTGTGCGCATGTCCCCACCCTGNTCGCCCGGAGCCTTCCCAACTCCCATCCCGGGAGGATGGAGCGAGAGCATCG]
[+] EMBL AL693227 [GCCCCCAGGGTTATGTCGAGAACGGCCGACAANGGCGGCGNCTGCAATCCAACCGGATTCTAACTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCATGCTAGTTGAACAAGTGACAGCTAGAAGACCAGGAAGAAGAAAGAAAAGCAAGAAAGAANGAAACAAAGGGGGGNGAAAAGATTCGTAACAAGGTGTCGGCTCAGCATTCTGTCGAAGGCGTTCCACATTACACATATCAGCGGCGACAACGGTGTGCCGACGATAGTAAACAGAAGTGTCGATCACACATCATCATTCAACCTGTGCGCATGTCCCCACCCTGNTCGCCCGGAGCCTTCCCAACTCCCATCCCGGGAGGATGGAGCGAGAGCATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6751#3 ------------------------------------------------------------
consensus_6751#4 ------------------------------------------------------------
consensus_6751#0 TTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTTTTTTAATTAACCCATTTTTT 60
consensus_6751#1 ------------------------------------------------------------
consensus_6751#2 ------------------------------------------------------------
consensus_6751#3 ------------------------------------------------------------
consensus_6751#4 ------------------------------------------------------------
consensus_6751#0 TAATTTTTTCAGTCTTTTTGTTATTGTTTTGCTAGAAAAAGATATGATGAATTTTGCATT 120
consensus_6751#1 -----------------CCGTGCCGGACGTGCATGGTGCGTGCGCGTGTATGTGTGCCCG 43
consensus_6751#2 -----------------AATCGGCCGAGGCGNTAGGCGTGCGCCCGTTTGTGTGTATTTC 43
consensus_6751#3 ------------------------------------------------------------
consensus_6751#4 ------------------------------------------------------------
consensus_6751#0 GGAGAAGATTGAATTACTAACCATGAATTGGCATTTACATAATATTGCTTCCTTTCTTCT 180
consensus_6751#1 GGAACGTAAGCAAGCGAAAGTCGTGTGTGCGCGTGCGTTTCGGCAAATTCCTGCAAAAAA 103
consensus_6751#2 GG--CGAAAGCAAATGGTGTTGGTGTGCAC-------TATTAGCTGATG---GCAGACGA 91
consensus_6751#3 ------------------------------------------------------------
consensus_6751#4 ------------------------------------------------------------
consensus_6751#0 TCTTCTTTTTTTGCTCATAATAAATTGCGTAGTTGCTATTCTGC-AGATGCGCGGCTTGC 239
consensus_6751#1 AAAAACACACACACACAAGCGTGACAGTTTGCGCACAGTTCTACCGAGCGCGTGCGCCCG 163
consensus_6751#2 ACGACCGT---TACTTTGCCAAAACA-CGTGAACACAGGTGCAG-GTGCGTTTATGTGTG 146
consensus_6751#3 ----------------------------GGCCNAGGGGACGGTGCGA--------GAACG 24
consensus_6751#4 ----------------------------GCCCCCAGGGTTATGTCGA--------GAACG 24
consensus_6751#0 TGTGTGTGTGTGTGTATGTGTGAGGTGGTGCAGTGAAGTCGTGTTAGTT------AGAAA 293
consensus_6751#1 TTTGTGTGTATTTCGGCGAAAGCAAAGGTGTTGGTGTGCACTATTAGCTGATGGCAGACG 223
consensus_6751#2 TTTGTCTGTGTT--GGTTTGTGTGAGTGTGTGGGATTGTTGTTCTAA---GTAGAGGATG 201
* *
consensus_6751#3 GCCGACAAA---------GGCGGCCGGCTGCAA-CCAACCGGATTCTAAGCTGGCAAGAG 74
consensus_6751#4 GCCGACAAN---------GGCGGC-GNCTGCAATCCAACCGGATTCTAA-CTGGCAAGAG 73
consensus_6751#0 GAAGAAGAA---------GAAGACGAAGAACACAGGTGCAGGATTCTAAGCTGGCAAGAG 344
consensus_6751#1 AACGACCGTTACTTTGCCAAAACACGTGAACACAGGTGCAGGATTCTAAGCTGGCAAGAG 283
consensus_6751#2 GGCGGACG----------GAAAATCGATAGCGCAGCCGAAGGATTCTAAGCTGGCAAGAG 251
* * ********* **********
consensus_6751#3 TA-GAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTG------AGT 127
consensus_6751#4 TA-GAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTG------AGT 126
consensus_6751#0 TA-GAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGTGTGTGAGT 403
consensus_6751#1 TA-GAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTG------AGT 336
consensus_6751#2 TACGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTG------AGT 305
** ************************************************ ***
consensus_6751#3 GCGTGCAGTGAACAATCCA-GCAG--TGAACAAGTGA-AGCTAGAAGAA-AGGAAGAA-G 181
consensus_6751#4 GCGTGCAGTGAACAATCCATGCTAGTTGAACAAGTGACAGCTAGAAGACCAGGAAGAA-G 185
consensus_6751#0 GCGTGCAGTGAACAATCCA-GCAG--TGAACAAGTGA-AGCTAGAAGAA-AGGAAGAA-G 457
consensus_6751#1 GCGTGCAGTGAACAATCCA-GCAG--TGAACAAGTGA-AGCTAGAAGAA-AGGAAGAA-G 390
consensus_6751#2 GCGTGCAGTGAACAATCCA-GCAG--TGAACAAGTGA-AGCTAGAAGAACAGGAAGAACG 361
******************* ** *********** ********** ******** *
consensus_6751#3 AAAGAAAAGCAAGAAA-GAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAG-TGTCG 239
consensus_6751#4 AAAGAAAAGCAAGAAA-GAANGAAACAAAGGGGGGNGAAAAGATTCGTAACAAGGTGTCG 244
consensus_6751#0 AAAGAAAAGCAAGAAA-GAAAGAAACAAAGGGGGG-GAAAAGATTCGTAACAAG-TGTCG 514
consensus_6751#1 AAAGAAAAGCAAGAAA-GAAAGAAACAAAGGGGGG-GAAAAGATTCGTAACAAG-TGTCG 447
consensus_6751#2 AAAGAAAAGCAAGAAACGAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAG-TGTCG 420
**************** *** ************** ****************** *****
consensus_6751#3 -CTCAGC-TTCTGTCGTGGC--TTCCACATTACACATATCA-CGGCGACAACGGTGTGCG 294
consensus_6751#4 GCTCAGCATTCTGTCGAAGGCGTTCCACATTACACATATCAGCGGCGACAACGGTGTGCC 304
consensus_6751#0 -CTCAGC-TTCTGTCGTGGC--TTCCACATTACACATATCA-CGGCGACAACGGTGTGCG 569
consensus_6751#1 -CTCAGC-TTCTGTCGTGGC--TTCCACATTACACATATCA-CGGCGACAACGGTGTGCG 502
consensus_6751#2 -CTCAGC-TTCTGTCGTGGC--TTCCACATTACACATATCA-CGGCGACAACGGTGTGCG 475
****** ******** * ******************* *****************
consensus_6751#3 A--GATAGTAAACAAACGTC---ATCAC-CATCATC-TTCAACCTGTGCGC-TGCCCCCC 346
consensus_6751#4 GACGATAGTAAACAGAAGTGTCGATCACACATCATCATTCAACCTGTGCGCATGTCCCCA 364
consensus_6751#0 A--GATAGTAAACAAACGTC---ATCAC-CATCATC-TTCAAC----------------- 605
consensus_6751#1 A--GATAGTA-------------------------------------------------- 510
consensus_6751#2 A--GATAGTAAACAAACTTCATCACCATCAT----------------------------- 504
*******
consensus_6751#3 CCC----CCCCCGGCAGCTTCCCAACTCCCATCCCGGGAGGATGGAGGCGACGAGCATCG 402
consensus_6751#4 CCCTGNTCGCCCGGAGCCTTCCCAACTCCCATCCCGGGAGGATGGAG-CGA-GAGCATCG 422
consensus_6751#0 ------------------------------------------------------------
consensus_6751#1 ------------------------------------------------------------
consensus_6751#2 ------------------------------------------------------------
consensus_6751#3 ATCAACGCCGAGGCAGCGTGTCG 425
consensus_6751#4 -----------------------
consensus_6751#0 -----------------------
consensus_6751#1 -----------------------
consensus_6751#2 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||