cluster # 6762

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Anopheles gambiae
cluster # 6762 cluster # 6762 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6762#0 length = 866 sequences # 5

consensus_6762#1 length = 116 sequences # 1

consensusID : consensus_6762#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 866
fasta sequence

                              [CCGCCCACGCGTCCGCGCCACG---CC-T--GCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCCAGTGATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGCACTTA-CCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACA-GTTCGAATCAACCAGCGCCCGCATGGCATTCCCCTGTTACGACGAAACCGGGTCTGAAGGCAACGTTCACCGTTTCCATCACGCATAGCCGCAGCTACAATTTTTTCTCGAACATGCCTCAAAAGACTTTTACGGACATTGAGACCGATATGCGCACCACATTCTTCGAAAAGACCCCAGCCATGTCTACCTATCTGCTGGCATTTGTGGTTTCCGA]

[+] EMBL BM578376             [CCGCCCACGCGTCCGC CCACGCGTCCGT  GCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCCAGTGATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGCACTTACCCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACA                                                                                                                                                                                                                            ]
[+] EMBL BM642375             [    CCACGCGTCCGCG GACG   CG TGGGCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCCAGTGATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGCACTTA CCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACAGGTTC                                                                                                                                                                                                                     ]
[+] EMBL BM604559             [            CCGCGCTAAG   CC T  GCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCCAGTGATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGCACTTA CCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACA GTTCGAATCAACCAGCGCCCGCATGGCATTCCCCTGTTACGACGAAACCGGGTCT                                                                                                                                                                  ]
[+] EMBL BM651841             [                           cc  GCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTCGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCATACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTCCCTGGTGCCAGTGATCTCAGTGGTGGTGTTGCGAGTGATGAGATTGGCGTAGCTCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTTACGAGCC                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CNS08ZRO             [                                              GAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCATACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTCCCTGGTGCCAGTGATCTCAGTGGTGGTGTTGCGAGTGATGAGATCGGCGTAG TCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCTCAACGATCCTGCAGCCTGGCACTTA CCTGCTGGAGGTTGCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACA GTTCGAATCAACCAGCGCCCGCATGGCATTCCCCTGTTACGACG AACCGGGTCTGAAGGCAACGTTCACCGTTTCCATCACGCATAGCCGCAGCTACAATTTTTTCTCGAACATGCCTCAAAAGACTTTTACGGACATTGAGACCGATATGCGCACCACATTCTTCGAAAAGACCCCAGCCATGTCTACCTATCTGCTGGCATTTGTGGTTTCCGA]




>consensus_6762#0
CCGCCCACGCGTCCGCGCCACGCCTGCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAA
TGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACC
GACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCCAGTG
ATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTTGATG
AACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCG
AAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGC
AGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGT
CCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCA
CGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGCACTT
ACCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCT
CCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACAGTTCGAATCAA
CCAGCGCCCGCATGGCATTCCCCTGTTACGACGAAACCGGGTCTGAAGGCAACGTTCACC
GTTTCCATCACGCATAGCCGCAGCTACAATTTTTTCTCGAACATGCCTCAAAAGACTTTT
ACGGACATTGAGACCGATATGCGCACCACATTCTTCGAAAAGACCCCAGCCATGTCTACC
TATCTGCTGGCATTTGTGGTTTCCGA

consensusID : consensus_6762#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 116
fasta sequence

                              [CCGCCCACGCGTGCGCCCACGTCGTCCGTGCCGGTTTATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGGCTGTGCTGCCTGTTGGCATC]

[+] EMBL BM617623             [CCGCCCACGCGTGCGCCCACGTCGTCCGTGCCGGTTTATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGGCTGTGCTGCCTGTTGGCATC]




>consensus_6762#1
CCGCCCACGCGTGCGCCCACGTCGTCCGTGCCGGTTTATAGGTAGAGTGGTACCCCCGCA
ATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGGCTGTGCTGCCTGTTGGCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6762#0      CCGCCCACGCGT----CCGCGCCACGCCTGCCGGTCGATAGGTAGAGTGGTACCCCCGCA 56
consensus_6762#1      CCGCCCACGCGTGCGCCCACGTCGTCCGTGCCGGTTTATAGGTAGAGTGGTACCCCCGCA 60
                      ************    ** ** *   * *******  ***********************

consensus_6762#0      ATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCC 116
consensus_6762#1      ATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGGCTGTGCTGCCTGTTGGCATC---- 116
                      *********************************** ********************    

consensus_6762#0      GACCGACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCC 176
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      AGTGATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTT 236
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      GATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGT 296
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      ACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTA 356
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      GTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAG 416
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      GTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTAC 476
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      AGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGC 536
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      ACTTACCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTAT 596
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      GTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACAGTTCGAA 656
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      TCAACCAGCGCCCGCATGGCATTCCCCTGTTACGACGAAACCGGGTCTGAAGGCAACGTT 716
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      CACCGTTTCCATCACGCATAGCCGCAGCTACAATTTTTTCTCGAACATGCCTCAAAAGAC 776
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      TTTTACGGACATTGAGACCGATATGCGCACCACATTCTTCGAAAAGACCCCAGCCATGTC 836
consensus_6762#1      ------------------------------------------------------------
                                                                                  

consensus_6762#0      TACCTATCTGCTGGCATTTGTGGTTTCCGA 866
consensus_6762#1      ------------------------------