|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6763#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1364 fasta sequence
[CCGAAAACATTGTGCAGGCTCCACCCGCGGAGAAAAGCTCCTGGCGCCGAAAACCCGAGGATGATGCTACTCTGCCGAAGAAGGATGGCGAACAATGGAATGGAGATAATATGACAGGATATTTGAAGCAAATGTTACGCATCGACGAAAAAGCTGGAAGCGAAAAGGGGAGCGAGAAAAGTGTAAACCCTGCAAGTATTGCCGTGCCCGCCCCAGCTAGTCTGCCGAAACCACCGATTCAGTGGCAAACGCAAGCCGCTTCAAAGAGTCCGGCAAAGGGACCGACAGCGGTTCCTTTGACGGAAGTAAATGAAACAACGAAAAATAACACTAACAACACAGCGAACCAATTTATTGCACAATATATGAAAACTCCACAGCCCCAAATGGCTTCCATGGCACAACCGATGCACCTCGGCTTCAGACCGATGCTCCGTCCGCCAACGCACACGTTTGATCCGCGACATCCACAGCCACAGTTCGGGCCTATGATTATGCAACCAGTATTTATGCAGACGGGTACGAACATGCACCAGTCCATGGGAGCATTCCAGCAGCCAGCTATGCCACCATTTCCCCAGAACATGCCAATGCGACCACCGGTACCGTTCCCTAACAGAATGGAAAACAGTGTACCGTTTCCGCCACACGGGCAT-GGATTGAACAATGCGCCAGCAAAGATGATGGTACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCAACAGCAACATCATCAACAGAAGCAACAGCATCAAGTACAACCACACTATCCCTCCAACTGGGGCCCAAAAGGGCCGCAGCATTTGTCATACAACAAGAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCAGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGATTAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAACTACCGGCGGTTTTAATGAG-AAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAGCGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTC-AAAGTCGGACACCAAGC-ACTAAAAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTGTGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAACTCCTTCTAAATCCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAAGCCATGCCGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTAT]
[+] EMBL BM636524 [CCGAAAACATTGTGCAGGCTCCACCCGCGGAGAAAAGCTCCTGGCGCCGAAAACCCGAGGATGATGCTACTCTGCCGAAGAAGGATGGCGAACAATGGAATGGAGATAATATGACAGGATATTTGAAGCAAATGTTACGCATCGACGAAAAAGCTGGAAGCGAAAAGGGGAGCGAGAAAAGTGTAAACCCTGCAAGTATTGCCGTGCCCGCCCCAGCTAGTCTGCCGAAACCACCGATTCAGTGGCAAACGCAAGCCGCTTCAAAGAGTCCGGCAAAGGGACCGACAGCGGTTCCTTTGACGGAAGTAAATGAAACAACGAAAAATAACACTAACAACACAGCGAACCAATTTATTGCACAATATATGAAAACTCCACAGCCCCAAATGGCTTCCATGGCACAACCGATGCACCTCGGCTTCAGACCGATGCTCCGTCCGCCAACGCACACGTTTGATCCGCGACATCCACAGCCACAGTTCGGGCCTATGATTATGCAACCAGTATTTATGCAGACGGGTACGAACATGCACCAGTCCATGGGAGCATTCCAGCAGCCAGCTATGCCACCATTTCCCCAGAACATGCCAATGCGACCACCGGTACCGTTCCCTAACAGAATGGAAAACAGTGTACCGTTTCCGCCACACGGGCATGGGATTGA ]
[+] EMBL BX606729 [ AAACCACCGATTCAGTGGCAAACGCAAGCCGCTTCAAAGAGTCCGGCAAAGGGACCGACAGCGATTCCTTTGACGGAAGTAAATGAAACAACGAAAAATAACACTAACAACACAGCGAACCAATTTATTGCACAATATATGAAAACTCCACAGCCCCAAATGGCTTCCATGGCACAACCGATGCACCTCGGCTTCAGACCGATGCTCCGTCCGCCAACGCACACATTTGATACGCGACATCCACAGCCACAGTTCGGGCCTATGATTATGCAACCAGTATTTATGCAGACGGGTACGAACATGCACCAGTCCATGGGAGCATTCCAACAGCCAGCTATGCCACCATTTCCCCAGAACATGCCAATGCGACCACCGGTACCGTTCCCTAACAGAATGGAAAACAATGTACCGTTTCCGCCACACAGGCAT GGATTGA ]
[+] EMBL BM614437 [ ccgCAATTTATTGCACAATATATGAAAACTCCACAGCCCCAAATGGCTTCCATGGCACAACCGATGCACCTCGGCTTCAGACCGATGCTCCGTCCGCCAACGCACACGTTTGATCCGCGACATCCACAGCCACAGTTCGGGCCTATGATTATGCAACCAGTATTTATGCAGACGGGTACGAACATGCACCAGTCCATGGGAGCATTCCAGCAGCCAGCTATGCCACCATTTCCCCAGAACATGCCAATGCGACCACCGGTACCGTTCCCTAACAGAATGGAAAACAGTGTACCGTTTCCGCCACACGGGCAT GGATTGAACAATGCGCCAGCAAAGATGATGGTACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCAACAGCAACATCATCAACAGAAGCAACAGCATCAAGTACAACCACACTATCCCTCCAACTGGGGCCCAAAAGGGCCGCAGCATTTGTCATACAACAAGAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCAGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGATTAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACG ]
[+] EMBL BM636922 [ ccgTGCCACCATTTCCCCAGAACATGCCAATGCGACCACCGGTACCGTTCCCTAACAGAATGGAAAACAGTGTACCGTTTCCGCCACACGGGCAT GGATTGAACAATGCGCCAGCAAAGATGATGGTACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCAACAGCAACATCATCAACAGAAGCAACAGCATCAAGTACAACCACACTATCCCTCCAACTGGGGCCCAAAAGGGCCGCAGCATTTGTCATACAACAAGAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCAGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGATTAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAACTACCGGCGGTTTTAATGAGAAAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAGCGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTC AAAGTCGGACACCAAGC ACTAAAAAATAAGCACAACAGCAACACGTCG ]
[+] EMBL BM578412 [ ccgCAGCAACATCATCAACAGAAGCAACAGCATCAAGTACAACCACACTATCCCTCCAACTGGGGCCCAAAAGGGCCGCAGCATTTGTCATACAACAAGAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCAGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGATTAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAACTACCGGCGGTTTTAATGAG AAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAGCGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTCAAAAGTCGGACACAAAGCAACAAAAAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTGTGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAACTCCTTCTAAATCCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAAGCCATGCCGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTAT]
consensusID : consensus_6763#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 737 fasta sequence
[ACGGAAGTAAATGAAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCGGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGAATAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAACTACCGGCGGTTTTAATGAGAAAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAGCGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTCAAAAGTCGGACACAAAGCAACAAAAAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTGTGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAGCTCCTTCTAAATCCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAAGCCGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTATACCAATAGGAGTGTTTTAGCATTGTTTTTGAGCGCAACGTACTCGAGTTTGGGTGTGTTATTCAATCAATTCCTTCATTTCGGTATACAACAACAATGTTTGTAAAGTTTACGTACCTACTGTAAAAAGACGGCAACGTATTTTGAACTATGTACAAACGAATAGCAGATTTATTTATGGATTGA]
[+] EMBL BX618146 [ACGGAAGTAAATGAAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCGGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGAATAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAACTACCGGCGGTTTTAATGAGAAAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAGCGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTCAAAAGTCGGACACAAAGCAACAAAAAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTGTGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAGCTCCTTCTAAATCCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAAGCCGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTATACCAATAGGAGTGTTTTAGCATTGTTTTTGAGCGCAACGTACTCGAGTTTGGGTGTGTTATTCAATCAATTCCTTCATTTCGGTATACAACAACAATGTTTGTAAAGTTTACGTACCTACTGTAAAAAGACGGCAACGTATTTTGAACTATGTACAAACGAATAGCAGATTTATTTATGGATTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6763#0 CCGAAAACATTGTGCAGGCTCCACCCGCGGAGAAAAGCTCCTGGCGCCGAAAACCCGAGG 60
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 ATGATGCTACTCTGCCGAAGAAGGATGGCGAACAATGGAATGGAGATAATATGACAGGAT 120
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 ATTTGAAGCAAATGTTACGCATCGACGAAAAAGCTGGAAGCGAAAAGGGGAGCGAGAAAA 180
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 GTGTAAACCCTGCAAGTATTGCCGTGCCCGCCCCAGCTAGTCTGCCGAAACCACCGATTC 240
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 AGTGGCAAACGCAAGCCGCTTCAAAGAGTCCGGCAAAGGGACCGACAGCGGTTCCTTTGA 300
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 CGGAAGTAAATGAAACAACGAAAAATAACACTAACAACACAGCGAACCAATTTATTGCAC 360
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 AATATATGAAAACTCCACAGCCCCAAATGGCTTCCATGGCACAACCGATGCACCTCGGCT 420
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 TCAGACCGATGCTCCGTCCGCCAACGCACACGTTTGATCCGCGACATCCACAGCCACAGT 480
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 TCGGGCCTATGATTATGCAACCAGTATTTATGCAGACGGGTACGAACATGCACCAGTCCA 540
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 TGGGAGCATTCCAGCAGCCAGCTATGCCACCATTTCCCCAGAACATGCCAATGCGACCAC 600
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 CGGTACCGTTCCCTAACAGAATGGAAAACAGTGTACCGTTTCCGCCACACGGGCATGGAT 660
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 TGAACAATGCGCCAGCAAAGATGATGGTACAGCAGCAGCAGCAGCAGCAGCAGCAACAGC 720
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 AACATCAACAGCAACATCATCAACAGAAGCAACAGCATCAAGTACAACCACACTATCCCT 780
consensus_6763#1 ------------------------------------------------------------
consensus_6763#0 CCAACTGGGGCCCAAAAGGGCCGCAGCATTTGTCATACAACAAGAACAATCCTGCCGGTA 840
consensus_6763#1 ------------------------------ACGGAAGTAAATGAAACAATCCTGCCGGTA 30
* ** ****************
consensus_6763#0 ATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCAGGAGGAG 900
consensus_6763#1 ATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCGGGAGGAG 90
**************************************************** *******
consensus_6763#0 GAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGA 960
consensus_6763#1 GAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGA 150
************************************************************
consensus_6763#0 CTTTGATTAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAA 1020
consensus_6763#1 CTTTGAATAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAA 210
****** *****************************************************
consensus_6763#0 CTACCGGCGGTTTTAATGAGAAAA-TGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAG 1079
consensus_6763#1 CTACCGGCGGTTTTAATGAGAAAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAG 270
************************ ***********************************
consensus_6763#0 CGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTCAAA-GTCGGACACCAAGCA-CTAA 1137
consensus_6763#1 CGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTCAAAAGTCGGACACAAAGCAACAAA 330
*************************************** ********* ***** * **
consensus_6763#0 AAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTG 1197
consensus_6763#1 AAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTG 390
************************************************************
consensus_6763#0 TGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAACTCCTTCTAAAT 1257
consensus_6763#1 TGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAGCTCCTTCTAAAT 450
*********************************************** ************
consensus_6763#0 CCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAAGCCATGC 1317
consensus_6763#1 CCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAA-----GC 505
***************************************************** **
consensus_6763#0 CGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTAT------------- 1364
consensus_6763#1 CGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTATACCAATAGGAGTG 565
***********************************************
consensus_6763#0 ------------------------------------------------------------
consensus_6763#1 TTTTAGCATTGTTTTTGAGCGCAACGTACTCGAGTTTGGGTGTGTTATTCAATCAATTCC 625
consensus_6763#0 ------------------------------------------------------------
consensus_6763#1 TTCATTTCGGTATACAACAACAATGTTTGTAAAGTTTACGTACCTACTGTAAAAAGACGG 685
consensus_6763#0 ----------------------------------------------------
consensus_6763#1 CAACGTATTTTGAACTATGTACAAACGAATAGCAGATTTATTTATGGATTGA 737
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||