|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 911 fasta sequence
[GACTTCCGCACGAAACCGTCGCTGTGCTCAAATTCTTTCTC-AAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACATGAAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATCCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTTCGTTGAAGAACGCCGGTAGAACAATAGCGTGCGGAAACAGCGATTTAACCCTCACCAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGACAACTACCTAACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGTAGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCGTGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATTTGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAATTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTATGTTGAAGATTGAATCTTAAAAGAAACATAACGCAATGTTTTGTTG]
[+] EMBL CNS09B9P [GACTTCCGCACGAAACCGTCGCTGTGCTCAAATTCTTTCTC AAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACATGAAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATCCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTTCGTTGAAGAACGCCGGTAGAACAATAGCGTGCGGAAACAGCGATTTAACCCTCACCAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGACAACTACCTAACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGTAGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCGTGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATTTGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAATTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTAT ]
[+] EMBL CNS09D00 [ CGCACGAAACCGTCGCTGTGCTCAAATTCTTTCTC AAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACATGAAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATCCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTTCGTTGAAGAACGCCGGTAGAACAATAGCGTGCGGAAACAGCGATTTAACCCTCACCAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGACAACTACCTAACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGTAGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCGTGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATTTGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAATTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTATGTTGAAGATTGAATCTTAAAAGAAACATAACGCAATGTT ]
[-] EMBL CNS09D01 [ GAAACCGTCGCTGTGCTCAAATTCTTTCTCAAAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAAAATACACATGAAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGAAAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATCCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTTCGTTGAAGAACGCCGGTAGAACAATAGCGTGCGGAAACAGCGATTTAACCCTCACCAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGACAACTACCTAACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGTAGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCGTGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATTTGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAATTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTATGTTGAAGATTGAATCTTAAAAGAAACATAACGCAA ]
[+] EMBL CNS09G2K [ aGCTCAAATTCTTTCTC AAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACA ]
[-] EMBL CNS09B9Q [ tGTGCGGACGCTCACCCACAAGCCGTTGCTGTCATCGTCCTCATCATCCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTTCGTTGAAGAACGCCGGTAGAAAAATAGCGTGCGGAAACAGCGATTTAACCCTCACCAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGACAACTACCTTACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGTAGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCGTGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATTTGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAATTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTATGTTGAAGATTGAATCTTAAAAGAAACATAACGCAATGTTTTGTTG]
consensusID : consensus_6781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[CCCGAGGTTATATCGTAATAGTGTTTTTGTCTGGCAGAAGGTGATTGTGCTAATGTTCTCCACACAGGCTCATGTGTTTTTTTTTATATTTAAAATGTGAAGCTCAAATTCTTTCTTAAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACATGAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATACCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTCGTTGAAGAACGCCGGTAGAACAATAGCCGTGCGGAAACCAGCGATTTAACCTCACAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCA]
[+] EMBL AL694181 [CCCGAGGTTATATCGTAATAGTGTTTTTGTCTGGCAGAAGGTGATTGTGCTAATGTTCTCCACACAGGCTCATGTGTTTTTTTTTATATTTAAAATGTGAAGCTCAAATTCTTTCTTAAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACATGAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATACCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTCGTTGAAGAACGCCGGTAGAACAATAGCCGTGCGGAAACCAGCGATTTAACCTCACAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6781#0 ------------------------------------------------------------
consensus_6781#1 CCCGAGGTTATATCGTAATAGTGTTTTTGTCTGGCAGAAGGTGATTGTGCTAATGTTCTC 60
consensus_6781#0 ----------------GACTTCCGCACGAAACCGTCGCTGTGCTCAAATTCTTTCTCAAA 44
consensus_6781#1 CACACAGGCTCATGTGTTTTTTTTTATATTTAAAATGTGAAGCTCAAATTCTTTCTTAAA 120
** * * *************** ***
consensus_6781#0 TCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACA 104
consensus_6781#1 TCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACA 180
************************************************************
consensus_6781#0 GCAGGACCAACACAGCCAAACATACACATGAAAAAAAAAACAACACTTCAACAGGAACGT 164
consensus_6781#1 GCAGGACCAACACAGCCAAACATACACATGAAAAAAAAA-CAACACTTCAACAGGAACGT 239
*************************************** ********************
consensus_6781#0 GTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTAT 224
consensus_6781#1 GTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTAT 299
************************************************************
consensus_6781#0 CTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACC 284
consensus_6781#1 CTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACC 359
************************************************************
consensus_6781#0 GGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAA-GGTGCG 343
consensus_6781#1 GGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAAGGTGCG 419
***************************************************** ******
consensus_6781#0 GACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCAT-CCACATCGTCGTGCGTCT 402
consensus_6781#1 GACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATACCACATCGTCGTGCGTCT 479
***************************************** ******************
consensus_6781#0 CCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGT 462
consensus_6781#1 CCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGT 539
************************************************************
consensus_6781#0 TTTCGTTGAAGAACGCCGGTAGAACAATAGC-GTGCGGAAAC-AGCGATTTAACCCTCAC 520
consensus_6781#1 TT-CGTTGAAGAACGCCGGTAGAACAATAGCCGTGCGGAAACCAGCGATTTAACC-TCAC 597
** **************************** ********** ************ ****
consensus_6781#0 CAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGA 580
consensus_6781#1 -AGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCA---------------------- 634
*************************************
consensus_6781#0 CAACTACCTAACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGT 640
consensus_6781#1 ------------------------------------------------------------
consensus_6781#0 AGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCG 700
consensus_6781#1 ------------------------------------------------------------
consensus_6781#0 TGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATT 760
consensus_6781#1 ------------------------------------------------------------
consensus_6781#0 TGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAA 820
consensus_6781#1 ------------------------------------------------------------
consensus_6781#0 TTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTATGTTGAAGATTGAAT 880
consensus_6781#1 ------------------------------------------------------------
consensus_6781#0 CTTAAAAGAAACATAACGCAATGTTTTGTTG 911
consensus_6781#1 -------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||