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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 610 fasta sequence
[GAATNGGCCAG-GATTA-ATTGGTGCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGGCAACAACTTCTCCAATGTGTTGCAGAAAATCAACGTACTGCTCGTACCGTGGAACGAGTGTCTGAGTGTGCTGGGTGGGCCGGGTGGACCGTTTGATGAGCGGAACATCTG]
[+] EMBL AL932216 [GAATNGGCCAG GATTA ATTGGTGCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGGCAACAACTTCTCCAATGTGTTGCAGAAAATCAACGTACTGCTCGTACCGTGGAACGAGTGTCTGAGTGTGCTGGGTGGGCCGGGTGGACCGTTTGATGAGCGGAACATCTG]
[+] EMBL AL932217 [GAATCGCCCCGAGGTTACGTTGGTGCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGG ]
[+] EMBL BX623836 [ GCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGGCAACAACTTC ]
consensusID : consensus_6790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[TTCCCCGAGGTTTNAGTTGGTGCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCNGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTACCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCGGCTGACACTGCAGCAGCGTTGCTCGCGCTGTGTTCTGGATCCGAATGCACCCGGGACTATACCGGCGGTACTAGCTCGTTCGATGTCGGCCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGGAATCTTGATTCGTACCGGTAGCATATGGCCGGGCGTACGAGTGAAAATCCCAAACGGGACTGGTAGCAGTGTCGCGACCGGCTTGGGAGGNCTCGAACCACCAAGCAGCATCCTTGCCCGGCACCAACTTCTCCAATGTGTTAGCAGGAAAATCAACGTACCTGGCTCGTACCGTGGAAC]
[+] EMBL AL692708 [TTCCCCGAGGTTTNAGTTGGTGCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCNGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTACCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCGGCTGACACTGCAGCAGCGTTGCTCGCGCTGTGTTCTGGATCCGAATGCACCCGGGACTATACCGGCGGTACTAGCTCGTTCGATGTCGGCCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGGAATCTTGATTCGTACCGGTAGCATATGGCCGGGCGTACGAGTGAAAATCCCAAACGGGACTGGTAGCAGTGTCGCGACCGGCTTGGGAGGNCTCGAACCACCAAGCAGCATCCTTGCCCGGCACCAACTTCTCCAATGTGTTAGCAGGAAAATCAACGTACCTGGCTCGTACCGTGGAAC]
consensusID : consensus_6790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[GAATCGCACGAGGTTAATCAATTACGTTGGTGCTGTGNGGCGATTGCGGGCATCTGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCCCATACCTGGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGGACGCACGTGTGCGGCGGTACGATCCTGGAAACCCCGTCTGTCTACGTACCTTCGGAGCCGGCGGACCTCACTGGGCTGTTCCCTTCGGGGAACCCGAACCCAAGAGCTTCCGGAACGGGTTACTTATCGGGAACACAAGTTCCCGGNTTAAGGGGACCCCACGGAGCCCAAAANNTGATCTTAAACCAGGCCAATTCTCTGGAGCCCCGGTGCCCTGGGGCCTTGGAACCGAAAGCCCGGGCCCAAAGAGGGNGCCAACGGTTTGGCCCCTGTTTCCCCCGGAGGGATTNCAGGGTTCGGGTTTACTACCCTCTTTCTNTGGGCGCGCGCCAAACTTTTTTCCCCCCCAGGCGGGCGAACAACACAACTTTTCGGGGGNCCACAA]
[+] EMBL AL696969 [GAATCGCACGAGGTTAATCAATTACGTTGGTGCTGTGNGGCGATTGCGGGCATCTGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCCCATACCTGGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGGACGCACGTGTGCGGCGGTACGATCCTGGAAACCCCGTCTGTCTACGTACCTTCGGAGCCGGCGGACCTCACTGGGCTGTTCCCTTCGGGGAACCCGAACCCAAGAGCTTCCGGAACGGGTTACTTATCGGGAACACAAGTTCCCGGNTTAAGGGGACCCCACGGAGCCCAAAANNTGATCTTAAACCAGGCCAATTCTCTGGAGCCCCGGTGCCCTGGGGCCTTGGAACCGAAAGCCCGGGCCCAAAGAGGGNGCCAACGGTTTGGCCCCTGTTTCCCCCGGAGGGATTNCAGGGTTCGGGTTTACTACCCTCTTTCTNTGGGCGCGCGCCAAACTTTTTTCCCCCCCAGGCGGGCGAACAACACAACTTTTCGGGGGNCCACAA]
consensusID : consensus_6790#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[AATGCCCGAGGATAGTTGGTGCTGTGGGCGAACTACATACTGGTGTCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGGCAACAACTTCTCCAATGTGTTGCAGAAAATCAACGTACTGCTCGTACCGTGGAACGAGT]
[+] EMBL AL931293 [AATGCCCGAGGATAGTTGGTGCTGTGGGCGAACTACATACTGGTGTCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGGCAACAACTTCTCCAATGTGTTGCAGAAAATCAACGTACTGCTCGTACCGTGGAACGAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6790#0 ---------GAATNGGCCAGGATTAATTGGTGCTGTGGG-CGATTGCGGGCATC-GTTGC 49
consensus_6790#3 ------------------------------------------------------------
consensus_6790#1 ----------TTCCCCGAGGTTTNAGTTGGTGCTGTGGG-CGATTGCGGGCATC-GTTGC 48
consensus_6790#2 GAATCGCACGAGGTTAATCAATTACGTTGGTGCTGTGNGGCGATTGCGGGCATCTGTTGC 60
consensus_6790#0 CGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGG 109
consensus_6790#3 ------------------------------AATGCCCGAGGATA--GTTGGTGCTGTGGG 28
consensus_6790#1 CGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGG 108
consensus_6790#2 CGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGG 120
*** ** * ** * ** * ***
consensus_6790#0 CGAACTACC--ATACCTGG-TGTCCATCCAGCGCGCGTTCCTAACCTCCCGG-ACGCACG 165
consensus_6790#3 CGAACTAC---ATAC-TGG-TGTC-ATCCAGCGCGCGTTCCTAACCTCCCGG-ACGCACG 81
consensus_6790#1 CGAACTACC--ATACCTGG-TGTCCATCCAGCGCGCGTTCCTAACCTCCCGG-ACGCACG 164
consensus_6790#2 CGAACTACCCCATACCTGGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGGACGCACG 180
******** **** *** **** *************************** *******
consensus_6790#0 TGTGCGG-CGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCT-CCTGCTTCTG 223
consensus_6790#3 TGTGCGG-CGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCT-CCTGCTTCTG 139
consensus_6790#1 TGTGCNGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTACCTGCTTCTG 224
consensus_6790#2 TGTGCGG-CGGTACGATCCTGGAAACCCCGTCTGT-CTAC--GTACCTTCGGAGCCGGCG 236
***** * ************* * * * * ** ** * * * ** *
consensus_6790#0 GACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGC 283
consensus_6790#3 GACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGC 199
consensus_6790#1 GACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGC-GGC 283
consensus_6790#2 GACCTCACTGGGCT----GTTCCCTTCGGGGAACCCGAACCCAAGAGCTTCCGGAACGGG 292
**** * * *** *** * * * ** * * * * * **
consensus_6790#0 TGACAC-GCAGCAG----GTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGA-TATAC 337
consensus_6790#3 TGACAC-GCAGCAG----GTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGA-TATAC 253
consensus_6790#1 TGACACTGCAGCAGCGTTGCTCGCGCTGTGTTCTGGATCCGAATGCACCCGGGACTATAC 343
consensus_6790#2 TTACTT---ATCGG----GAACACAA---GTTCCCGGNTTAAGGGGACCCCACG--GAGC 340
* ** * * * * * * **** * * * **** *
consensus_6790#0 CGGCGGTACTAGCTCGTTCGATGTCG--CTGTGGTCCGCACCTCGTCCGCCTTCTTCTTT 395
consensus_6790#3 CGGCGGTACTAGCTCGTTCGATGTCG--CTGTGGTCCGCACCTCGTCCGCCTTCTTCTTT 311
consensus_6790#1 CGGCGGTACTAGCTCGTTCGATGTCGGCCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTT 403
consensus_6790#2 CCAAAANNTGATCTTAAACCAGGCCA----ATTCTCTGGAGCCCCGGTGCCCTGGGGCCT 396
* * ** * * * * * ** * * * * *** * *
consensus_6790#0 ACGAA--TCTGATTCGT-CCGGTAGCAT-TGCC--GGCGTTCGAT--GAAATCCCAACCG 447
consensus_6790#3 ACGAA--TCTGATTCGT-CCGGTAGCAT-TGCC--GGCGTTCGAT--GAAATCCCAACCG 363
consensus_6790#1 ACGGAATCTTGATTCGTACCGGTAGCATATGGCCGGGCGTACGAGTGAAAATCCCAAACG 463
consensus_6790#2 TGGAACCGAAAGCCCGGGCCCAAAGAGGGNGCC-AACGGTTTGGC-------CCCTGTTT 448
* * ** ** ** * * ** * ***
consensus_6790#0 GG-CTGGTGC--GTGTCGG---CGGCT----GGGGCTCGA-CCACCAA-CAGCATCCT-G 494
consensus_6790#3 GG-CTGGTGC--GTGTCGG---CGGCT----GGGGCTCGA-CCACCAA-CAGCATCCT-G 410
consensus_6790#1 GGACTGGTAGCAGTGTCGCGACCGGCTTGGGAGGNCTCGAACCACCAAGCAGCATCCTTG 523
consensus_6790#2 CCCCCGGAGG-GATTNCAG----GGTTC---GGGTTTACTACCCTCTTTCTNTGGGCGCG 500
* ** * * ** * ** * ** * * * *
consensus_6790#0 CCCGGCAACAACTTCTCCAATGTGTT-GCAG-AAAATCAACGTACT--GCTCGTACCGTG 550
consensus_6790#3 CCCGGCAACAACTTCTCCAATGTGTT-GCAG-AAAATCAACGTACT--GCTCGTACCGTG 466
consensus_6790#1 CCCGGCACCAACTTCTCCAATGTGTTAGCAGGAAAATCAACGTACCTGGCTCGTACCGTG 583
consensus_6790#2 CGCCAAACTTTTTTCCCCCCCAGGCGGGCGAACAACACAACTTTTCGGGGGNCCACAA-- 558
* * * *** ** * ** ** **** * * **
consensus_6790#0 GAACGAGTGTCTGAGTGTGCTGGGTGGGCCGGGTGGACCGTTTGATGAGCGGAACATCTG 610
consensus_6790#3 GAACGAGT---------------------------------------------------- 474
consensus_6790#1 GAAC-------------------------------------------------------- 587
consensus_6790#2 ------------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||