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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1248 fasta sequence
[TAAACAAATATCCGGCATTGGCCGGTGTTTTATTTCCGCCTGAAAGTATGCACCTCCCAACCTGCCACTATCCATGCATGCTAGAAAGCGGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCCCCAACAGCACCGCACGTGCTAACCATGTTCCTGCTCTATAGCACTCCCTTTTCGGTTCAGGAGGAGCATAACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGTTTCTGTGTGTGCCACATCGGTGGCCATACACAGAAGTAGTGCATAATAAACAAACAACTTTCATGCCCGATAATGGACACATAATAACCGTATCTCGAGCACCGAATCATCAAGTGCCAATGACACTCTCTCCTAACACTAGACAGTAGCAGAAGCAACACGTGCACTAGACTCTTCACTTATTACCAAAACATACATGAACCAATGTGATTCCGAGCACGATTGAAATGCCTCTCCGCGATTGGGTGGGGCGGTGGATGACGTTCCCGGTACGATCTCATTTCCTTTCCCGGAATGCAAAAAAACGGATTGTACAGCAAACGAGCTACCATCCTGACCTCCTGTGTCCCTGTCCTTGTACCCAACCTTATCGGGATGCAATTTTCTTTGCGAAAGGAAATGGAGACTTGCAGAAATTCATAATTAAAATCGTTCCGTTTCCACCTTCATCGGCGATTGCGTCGAGGGAATGCTGCTCACGCTACGGTCCAGCCCACCGCGGTGTTCCTCCTCCGTGTACGATCCATCCAGCTCGGAGGTAACCGTTTGCTGTCCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGATACTGGCATCGTTCTCCAGCGGTCGGGCGCCACCGGCCGGCGTGAGCTTTACCGAGGTGCGCATCATCAGCGCTAGCGGGGCCATCGAACCGACGCTCAGCTTGGCCGCGGTGGTACGTTTTCCCTCACCGCCACTCACAACGACGCATTGGAGGGAGTCTTTCTTCGAGGATGCGGACGGGTTAGCGTCGGTGGTCGGTAGCTCCGACTC---GGCGGTGGTGGATCGGCTGAAGCAGCTGCCGAACGACTGTTCGTCCGAGGTGAGTAGCGAAATCAGCAAGCCCAGGATCACCGTCAGCAACGTGCCAAGGCAAC-AAACCACATGTAGCTGATCTGGTAGACGGAGGCGAACCAGGATGATGAACCGTCTTCCTGTCTGGCGGTGGTGGATAGCATTGACACATCGCTGGAAGC]
[+] EMBL CNS08PM9 [TAAACAAATATCCGGCATTGGCCGGTGTTTTATTTCCGCCTGAAAGTATGCACCTCCCAACCTGCCACTATCCATGCATGCTAGAAAGCGGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCCCCAACAGCACCGCACGTGCTAACCATGTTCCTGCTCTATAGCACTCCCTTTTCGGTTCAGGAGGAGCATAACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGTTTCTGTGTGTGCCACATCGGTGGCCATACACAGAAGTAGTGCATAATAAACAAACAACTTTCATGCCCGATAATGGACACATAATAACCGTATCTCGAGCACCGAATCATCAAGTGCCAATGACACTCTCTCCTAACACTAGACAGTAGCAGAAGCAACACGTGCACTAGACTCTTCACTTATTACCAAAACATACATGAACCAATGTGATTCCGAGCACGATTGAAATGCCTCTCCGCGATTGGGTGGGGCGGTGGATGACGTTCCCGGTACGATCTCATTTCCTTTCCCGGAATGCAAAAAAACGGATTGTACAGCAAACGAGCTACCATCCTGACCTCCTGTGTCCCTGTCCTTGTACCCAACCTTATCGGGATGCAATTTTCTTTGCGAAAGGAAATGGAGACTTGCAGAAATTCATAATTAAAATCGTTCCGTTTCCACCTTCATCGGCGATTGCGTCGAGGGAATGCTGCTCACGCTACGGTCCAGCCCACCGCGGTGTTCCTCCTCCGTGTACGATCCATCCAGCTCGGAGGTAACCGTTTGCTGTTCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGATACTGGCATCGTTCTCCAGCGGTCGGGCGCCACCGGCGGGCGT ]
[-] EMBL CNS08PM8 [ CTCCTAACACTAGACAGTAGCAGAAGCAACACGTGCACTAGACTCTTCACTTATTACCAAAACATACATGAACCAATGTGATTTCGAGCACGATTGAAATGCCTCTCCGCGATTGGGTGGGGCGGTGGATGACGTTCCCGGTACGATCTCATTTCCTTTCCCGGAATGCAAAAAAACGGATTGTACAGCAAACGAGCTACCATCCTGACCTCCTGTGTCCCTGTCCTTGTACCCAACCTTATCGGGATGCAATTTTCTTTGCGAAAGGAAATGGAGACTTGCAGAAATTCATAATTAAAATC TTCCGTTTCCACCTTCATCGGCGATTGCGTCGAGGGAATGCTGCTCACGCTACGGTCCAGCCCACCGCGGTGTTCCTCCTCCGTGTACGATCCATCCAGCTCGGAGGTAACCGTTTGCTGTCCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGATACTGGCATCGTTCTCCAGCGGTCGGGCGCCACCGGCCGGCGTGAGCTTTACCGAGGTGCGCATCATCAGCGCTAGCGGGGCCATCGAACCGACGCTCAGCTTGGCCGCGGTGGTACGTTTTCCCTCACCGCCACTCACAACGACGCATTGGAGGGAGTCTTTCTTCGAGGATGCGGACGGGTTAGCGTCGGTGGTCGGTAGCTCCGACTC GGCGGTGGTGGATCGGCTGAAGCAGCTGCCGAACGACTGTTCGTCCGAGGTGAGTAGCGAAATCAGCAAGCCCAGGATCACCGTCAGCAACGTGCCAAGGCAAC AAACCAC ]
[-] EMBL CNS08GYB [ CATCCTGACCTCCTGTGTCCCTGTCCTTGTACCCAACCTTATCGGGATGCAATTTTCTTTGCGAAAGGAAATGGAGACTTGCAGAAATTCATAATTAAAATCGTTCCGTTTCCACCTTCATCGGCGATTGCGTCGAGGGAATGCTGCTCACGCTACGGTCCAGCCCACCGCGGTGTTCCTCCTCCGTGTACGATCCATCCAGCTCGGAGGTAACCGTTTGCTGTCCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGATACTGGCATCGTTCTCCAGCGGTCGGGCGCCACCGGCCGGCGTGAGCTTTACCGAGGTGCGCATCATCAGCGCTAGCGGGGCCATCGAACCGACGCTCAGCTTGGCCGCGGTGGTACGTTTTCCCTCACCGCCACTCACAACGACGCATTGGAGGGAGTCTTTCTTCGAGGATGCGGACG ]
[-] EMBL BX627716 [ ATAATTAAAATCGTTCCGTTTCCACCCTCATGGGCGATTGCGTCGGGGGAATGCTGCTCACGCTACGGTCCAGCACACCGC GCTCNTCCTCCGCGGACGATCCATCCAGCTCGGAGGTAACCGTTTGCTGGCCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGATACTGGCGTCGTTCTCCAGCGGTCGGGCGCCTCCTGCCGGCGTGAGCTTTACCGAGGTGCGCATCATCAGCGCTAGCGGGGCCATCGAACCGACGCTCAGCTTGGCCGCGGTGGTACGCTTTCCCTCACCGCCACTCACAACGACGCACTGGAGGGAGTCCTTCTTCGAGGATGCGGACGGGTTAGCGTCGGTGGTCGGTAGCTCCGACTCGGTGGCGGTGGTGGATCGGCTGAAGCAGCTGCCGAACGACGGTTCGTCAGAGGTGAGTAGCGAAATCAGCAGGCCCAGGATCACCGTCAGCAGCGTGCCGAGGCAACTGTACCACATGTAGCTGATCTGGTAGACGGAGGCGAACCAGGATGATGAACCGTCTTCCTGTCTGGCGGTGGTGGATAGCATTGACACATCGCTGGAAGC]
consensusID : consensus_6793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 806 fasta sequence
[GAGGCAGAATCGCCACGAGGTTANTTCGCTTTTCAAAAACAAATATCCGGCATTGGCCGGTGTTTTAT-TTCCGCCTGAAAGTATGCACCTCCAAACCTTGCCACTACCTCTACATGCTAGAAAGCGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCTCCATCAGCACACGTACGTGCTAAACATTTTCCTACTCTATAGCACCCCCTTTTTCGGTTCAGGAGGAGCATAACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGT-GTGCCACATCGAT-GTA-GTGCATAATAAACAAACAA-CTTTCATGCCCGATAATGGACACATAATAACCGTATCTCGAGCACCGAATCATC-AAGTGCCAATGACACTCGCT-CCTAGCACTAGCCAGTAG-CAGAAGCAAC-ACGTGCACTAGACTCTTCACTTATTACCAAAAGCATACATGAACCAATGTGATTTCGAGCACGA-TTG-AAATGCCTCTCCGCGATTGGGCGNGGGGGCGGTAGATGACGTTCCC-GGTACGATCTCATTTCCTTNCCCGGGATGCGACACAGAAAAGGATTGTACAGCATACGAGCTATCTCGCCCTGGNCTCCTGTGTCCTTGTCCGCGCCCAANCTTACCGGGATGCAATTTTCTTTGCAAACAGGAAATGGAGACTTGCAGGCACAAGAGTTCATAAGTTGAGAAGTCGGTTCCGTTTCCACGCCTCATGGGCGATTGCGTCCAGGGGAATTGGCTTGCTCAACGCTACAGGGTGCCAGGAACAACGGGGCTCATCCTTCACGG]
[+] EMBL BX466596 [GAGGCAGAATCGCCACGAGGTTANTTCGCTTTTCAAAAACAAATATCCGGCATTGGCCGGTGTTTTAT TTCCGCCTGAAAGTATGCACCTCCAAACCTTGCCACTACCTCTACATGCTAGAAAGCGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCTCCATCAGCACACGTACGTGCTAAACATTTTCCTACTCTATAGCACCCCCTTTTTCGGTTCAGGAGGAGCATAACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGT GTGCCACATCGAT GTA GTGCATAATAAACAAACAA CTTTCATGCCCGATAATGGACACATAATAACCGTATCTCGAGCACCGAATCATC AAGTGCCAATGACACTCGCT CCTAGCACTAGCCAGTAG CAGAAGCAAC ACGTGCACTAGACTCTTCACTTATTACCAAAAGCATACATGAACCAATGTGATTTCGAGCACGA TTG AAATGCCTCTCCGCGATTGGGCGNGGGGGCGGTAGATGACGTTCCC GGTACGATCTCATTTCCTTNCCCGGGATGCGACACAGAA ]
[+] EMBL BX468595 [ gcaagaATCGGCCGAGGTTTGATANTCCGCCTGAAAGTATGCACCTCCAAACCTTGCCACTACCTCTACATGCTAGAAAGCGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCTCCATCAGCACACGTACGTGCTAAACATTTTCCTACTCTATAGCACCCCCTTTTTCGGTTCAGGAGGAGCATAACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGTGGTGCCACATCGATGGTAGGTGCATAATAAACAAACAAGTTTTCATGCCCGATAATGGACACATAATAACCGTATCTCGAGCACCGAATCATCAAAGTGCCAATGACACTCGCTCCCTAGCACTAGCCAGTAGACAGAAGCAACAACGTGCACTAGACTCTTCACTTATTACCAAAA CATACATGAACCAATGTGATTTCGAGCACGATTTGAAAATGCCTCTCCGCGATTGGGCG GGGGGCGGTAGATGACGTTCCCGGGTACGATCTCATTTCCTTTCCCGGGATGCAACAAAAAAAAGGATTGTACAGCATACGAGCTATCTCGCCCTGGNCTCCTGTGTCCTTGTCCGCGCCCAANCTTACCGGGATGCAATTTTCTTTGCAAACAGGAAATGGAGACTTGCAGGCACAAGAGTTCATAAGTTGAGAAGTCGGTTCCGTTTCCACGCCTCATGGGCGATTGCGTCCAGGGGAATTGGCTTGCTCAACGCTACAGGGTGCCAGGAACAACGGGGCTCATCCTTCACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6793#0 -----------------------------------TAAACAAATATCCGGCATTGGCCGG 25
consensus_6793#1 GAGGCAGAATCGCCACGAGGTTANTTCGCTTTTCAAAAACAAATATCCGGCATTGGCCGG 60
************************
consensus_6793#0 TGTTTTATTTCCGCCTGAAAGTATGCACCTCCCAACCT-GCCACTATCCATGCATGCTAG 84
consensus_6793#1 TGTTTTATTTCCGCCTGAAAGTATGCACCTCCAAACCTTGCCACTACCTCTACATGCTAG 120
******************************** ***** ******* * * ********
consensus_6793#0 AAAGCGGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCCCCAACAGCAC- 143
consensus_6793#1 AAAGCG-TTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCTCCATCAGCACA 179
****** ***************************************** *** ******
consensus_6793#0 CGCACGTGCTAACCATGTTCCTGCTCTATAGCACTCCCTTTT-CGGTTCAGGAGGAGCAT 202
consensus_6793#1 CGTACGTGCTAAACATTTTCCTACTCTATAGCACCCCCTTTTTCGGTTCAGGAGGAGCAT 239
** ********* *** ***** *********** ******* *****************
consensus_6793#0 AACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGTTTCTGTGTGTGCCAC 262
consensus_6793#1 AACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGT--------GTGTGCCAC 291
******************************************* *********
consensus_6793#0 ATCGGTGGCCATACACAGAAGTAGTGCATAATAAACAAACAACTTTCATGCCCGATAATG 322
consensus_6793#1 ATCGATG--------------TAGTGCATAATAAACAAACAACTTTCATGCCCGATAATG 337
**** ** ***************************************
consensus_6793#0 GACACATAATAACCGTATCTCGAGCACCGAATCATCAAGTGCCAATGACACTCTCTCCTA 382
consensus_6793#1 GACACATAATAACCGTATCTCGAGCACCGAATCATCAAGTGCCAATGACACTCGCTCCTA 397
***************************************************** ******
consensus_6793#0 ACACTAGACAGTAGCAGAAGCAACACGTGCACTAGACTCTTCACTTATTACCAAAA-CAT 441
consensus_6793#1 GCACTAGCCAGTAGCAGAAGCAACACGTGCACTAGACTCTTCACTTATTACCAAAAGCAT 457
****** ************************************************ ***
consensus_6793#0 ACATGAACCAATGTGATTCCGAGCACGATTGAAATGCCTCTCCGCGATTGGGTGGGG--- 498
consensus_6793#1 ACATGAACCAATGTGATTTCGAGCACGATTGAAATGCCTCTCCGCGATTGGGCGNGGGGG 517
****************** ********************************* * **
consensus_6793#0 CGGTGGATGACGTTCCCGGTACGATCTCATTTCCTTTCCCGGAATGCAA---AAAAACGG 555
consensus_6793#1 CGGTAGATGACGTTCCCGGTACGATCTCATTTCCTTNCCCGGGATGCGACACAGAAAAGG 577
**** ******************************* ***** **** * * *** **
consensus_6793#0 ATTGTACAGCAAACGAGCTACC--ATCCTGACCTCCTGTGTCCCTGTCCTTGTACCCAAC 613
consensus_6793#1 ATTGTACAGCATACGAGCTATCTCGCCCTGGNCTCCTGTGTCCTTGTCC--GCGCCCAAN 635
*********** ******** * **** *********** ***** * *****
consensus_6793#0 CTTATCGGGATGCAATTTTCTTTGCGAA-AGGAAATGGAGACTTGCAGA------AATTC 666
consensus_6793#1 CTTACCGGGATGCAATTTTCTTTGCAAACAGGAAATGGAGACTTGCAGGCACAAGAGTTC 695
**** ******************** ** ******************* * ***
consensus_6793#0 ATAATT---AAAATCG-TTCCGTTTCCAC-CTTCATCGGCGATTGCGTCGAGGGAATGCT 721
consensus_6793#1 ATAAGTTGAGAAGTCGGTTCCGTTTCCACGCCTCATGGGCGATTGCGTCCAGGGGAATTG 755
**** * ** *** ************ * **** ************ **** *
consensus_6793#0 GCTCACGCTACGGTCCAGCCCACCG-------CGGTGTTCCTCCTCCGTGTACGATCCAT 774
consensus_6793#1 GCTTGCTCAACGCTACAGGGTGCCAGGAACAACGGGGCTCATCCTTCACGG--------- 806
*** * * *** * *** ** *** * ** **** * *
consensus_6793#0 CCAGCTCGGAGGTAACCGTTTGCTGTCCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGA 834
consensus_6793#1 ------------------------------------------------------------
consensus_6793#0 TACTGGCATCGTTCTCCAGCGGTCGGGCGCCACCGGCCGGCGTGAGCTTTACCGAGGTGC 894
consensus_6793#1 ------------------------------------------------------------
consensus_6793#0 GCATCATCAGCGCTAGCGGGGCCATCGAACCGACGCTCAGCTTGGCCGCGGTGGTACGTT 954
consensus_6793#1 ------------------------------------------------------------
consensus_6793#0 TTCCCTCACCGCCACTCACAACGACGCATTGGAGGGAGTCTTTCTTCGAGGATGCGGACG 1014
consensus_6793#1 ------------------------------------------------------------
consensus_6793#0 GGTTAGCGTCGGTGGTCGGTAGCTCCGACTCGGCGGTGGTGGATCGGCTGAAGCAGCTGC 1074
consensus_6793#1 ------------------------------------------------------------
consensus_6793#0 CGAACGACTGTTCGTCCGAGGTGAGTAGCGAAATCAGCAAGCCCAGGATCACCGTCAGCA 1134
consensus_6793#1 ------------------------------------------------------------
consensus_6793#0 ACGTGCCAAGGCAACAAACCACATGTAGCTGATCTGGTAGACGGAGGCGAACCAGGATGA 1194
consensus_6793#1 ------------------------------------------------------------
consensus_6793#0 TGAACCGTCTTCCTGTCTGGCGGTGGTGGATAGCATTGACACATCGCTGGAAGC 1248
consensus_6793#1 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||